Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc11g0006340 Simmondsia chinensis HOM05D005009 ORTHO05D006203 2.2e-54 215.3 106 100.0
arahy.Tifrunner.gnm1.ann1.SBUN5C Arachis hypogaea HOM05D005009 ORTHO05D006203 6.6e-38 160.6 85 89.4
arahy.Tifrunner.gnm1.ann1.CDA2TW Arachis hypogaea HOM05D005009 ORTHO05D006203 8.6e-38 160.2 83 92.8
vmacro21942 Vaccinium macrocarpon HOM05D005009 ORTHO05D006203 3.3e-37 158.3 83 90.4
vmacro23458 Vaccinium macrocarpon HOM05D005009 ORTHO05D006203 3.3e-37 158.3 83 90.4
Rhsim07G0069300 Rhododendron simsii HOM05D005009 ORTHO05D006203 4.3e-37 157.9 83 89.2
Sed0026819 Sechium edule HOM05D005009 ORTHO05D006203 4.3e-37 157.9 83 91.6
Hund13390 Selenicereus undatus HOM05D005009 ORTHO05D006203 9.5e-37 156.8 81 92.6
EL10Ac2g02762 Beta vulgaris HOM05D005009 ORTHO05D006203 1.2e-36 156.4 81 92.6
CDE08G1579 Ceratophyllum demersum HOM05D005009 ORTHO05D006203 1.6e-36 156.0 81 92.6
AUR62031741 Chenopodium quinoa HOM05D005009 ORTHO05D006203 2.1e-36 155.6 81 92.6
AUR62032626 Chenopodium quinoa HOM05D005009 ORTHO05D006203 2.1e-36 155.6 81 92.6
HPP92_011756 Vanilla planifolia HOM05D005009 ORTHO05D006203 2.1e-36 155.6 83 90.4
VMungo1127G1850 Vigna mungo HOM05D005009 ORTHO05D006203 2.1e-36 155.6 83 90.4
Glyma.13G188051 Glycine max HOM05D005009 ORTHO05D006203 3.6e-36 154.8 83 88.0
Glyma.13G188400 Glycine max HOM05D005009 ORTHO05D006203 3.6e-36 154.8 83 88.0
Phvul.011G192750 Phaseolus vulgaris HOM05D005009 ORTHO05D006203 3.6e-36 154.8 81 92.6
Haze_02993 Corylus avellana HOM05D005009 ORTHO05D006203 4.7e-36 154.5 81 91.4
Sed0013386 Sechium edule HOM05D005009 ORTHO05D006203 4.7e-36 154.5 81 92.6
TWI15G1146 Tripterygium wilfordii HOM05D005009 ORTHO05D006203 4.7e-36 154.5 81 90.1
Eucgr.E03953 Eucalyptus grandis HOM05D005009 ORTHO05D006203 6.1e-36 154.1 81 90.1
FvH4_7g03830 Fragaria vesca HOM05D005009 ORTHO05D006203 6.1e-36 154.1 81 92.6
FAN03G3221 Fragaria x ananassa HOM05D005009 ORTHO05D006203 6.1e-36 154.1 81 92.6
FAN06G1190 Fragaria x ananassa HOM05D005009 ORTHO05D006203 6.1e-36 154.1 81 92.6
MBI19_g37444_MAGBIO Magnolia biondii HOM05D005009 ORTHO05D006203 8.0e-36 153.7 82 91.5
MD02G1276800 Malus domestica HOM05D005009 ORTHO05D006203 8.0e-36 153.7 82 90.2
PGR031G2406 Punica granatum HOM05D005009 ORTHO05D006203 8.0e-36 153.7 81 90.1
CSS0011052 Camellia sinensis var. sinensis HOM05D005009 ORTHO05D006203 1.0e-35 153.3 81 91.4
Cpa.g.sc82.9 Carica papaya HOM05D005009 ORTHO05D006203 1.0e-35 153.3 83 88.0
Manes.11G007500 Manihot esculenta HOM05D005009 ORTHO05D006203 1.0e-35 153.3 81 90.1
Psat4g146480 Pisum sativum HOM05D005009 ORTHO05D006203 1.0e-35 153.3 81 91.4
TPR.G8532 Trifolium pratense HOM05D005009 ORTHO05D006203 1.0e-35 153.3 81 91.4
Ah.01g018000 Amaranthus hybridus HOM05D005009 ORTHO05D006203 1.4e-35 152.9 81 91.4
CSS0003702 Camellia sinensis var. sinensis HOM05D005009 ORTHO05D006203 1.4e-35 152.9 81 90.1
Lj3g0027433 Lotus japonicus HOM05D005009 ORTHO05D006203 1.4e-35 152.9 81 90.1
Medtr8g040630 Medicago truncatula HOM05D005009 ORTHO05D006203 1.4e-35 152.9 81 91.4
Prupe.2G043300 Prunus persica HOM05D005009 ORTHO05D006203 1.8e-35 152.5 81 90.1
RcHm_v2.0_Chr1g0327201 Rosa chinensis HOM05D005009 ORTHO05D006203 1.8e-35 152.5 81 91.4
Sabra03G0144600 Salix brachista HOM05D005009 ORTHO05D006203 2.3e-35 152.1 87 87.4
Actinidia06220 Actinidia chinensis HOM05D005009 ORTHO05D006203 3.0e-35 151.8 81 88.9
CANSAT01G2494 Cannabis sativa HOM05D005009 ORTHO05D006203 3.0e-35 151.8 81 90.1
FAN10G3328 Fragaria x ananassa HOM05D005009 ORTHO05D006203 3.0e-35 151.8 81 91.4
Gohir.A03G073900 Gossypium hirsutum HOM05D005009 ORTHO05D006203 3.0e-35 151.8 81 88.9
Gohir.D03G100300 Gossypium hirsutum HOM05D005009 ORTHO05D006203 3.0e-35 151.8 81 88.9
Gorai.003G105400 Gossypium raimondii HOM05D005009 ORTHO05D006203 3.0e-35 151.8 81 88.9
MBI19_g44926_MAGBIO Magnolia biondii HOM05D005009 ORTHO05D006203 3.0e-35 151.8 81 91.4
Zm00001eb317990 Zea mays HOM05D005009 ORTHO05D006203 3.0e-35 151.8 81 88.9
Hma1.2p1_0837F.1_g226250 Hydrangea macrophylla HOM05D005009 ORTHO05D006203 4.0e-35 151.4 82 89.0
Potri.003G193900 Populus trichocarpa HOM05D005009 ORTHO05D006203 4.0e-35 151.4 81 91.4
Atru.chr12.1310 Acer truncatum HOM05D005009 ORTHO05D006203 5.2e-35 151.0 81 90.1
CiPaw.14G009400 Carya illinoinensis HOM05D005009 ORTHO05D006203 6.8e-35 150.6 81 90.1
ClCG05G027020 Citrullus lanatus HOM05D005009 ORTHO05D006203 6.8e-35 150.6 81 88.9
Nitab4.5_0002838g0060 Nicotiana tabacum HOM05D005009 ORTHO05D006203 6.8e-35 150.6 81 88.9
QL04p021447 Quercus lobata HOM05D005009 ORTHO05D006203 6.8e-35 150.6 80 88.8
QL07p029267 Quercus lobata HOM05D005009 ORTHO05D006203 6.8e-35 150.6 80 88.8
Cc03_g14060 Coffea canephora HOM05D005009 ORTHO05D006203 8.9e-35 150.2 81 92.6
Nitab4.5_0004168g0130 Nicotiana tabacum HOM05D005009 ORTHO05D006203 8.9e-35 150.2 82 87.8
Peaxi162Scf00220g00315 Petunia axillaris HOM05D005009 ORTHO05D006203 8.9e-35 150.2 101 71.3
Thecc.03G114300 Theobroma cacao HOM05D005009 ORTHO05D006203 8.9e-35 150.2 81 86.4
Duzib068G0995 Durio zibethinus HOM05D005009 ORTHO05D006203 1.2e-34 149.8 81 88.9
SHI34551 Sapria himalayana HOM05D005009 ORTHO05D006203 1.2e-34 149.8 83 86.7
CAN.G134.28 Capsicum annuum HOM05D005009 ORTHO05D006203 1.5e-34 149.4 83 85.5
MELO3C034019.2 Cucumis melo HOM05D005009 ORTHO05D006203 1.5e-34 149.4 81 88.9
CsaV3_5G036940 Cucumis sativus L. HOM05D005009 ORTHO05D006203 1.5e-34 149.4 81 88.9
Dinv32009 Davidia involucrata HOM05D005009 ORTHO05D006203 1.5e-34 149.4 81 90.1
ATR0307G112 Amborella trichopoda HOM05D005009 ORTHO05D006203 2.0e-34 149.1 81 88.9
Duzib084G0080 Durio zibethinus HOM05D005009 ORTHO05D006203 2.6e-34 148.7 81 86.4
Lalb_Chr19g0132931 Lupinus albus HOM05D005009 ORTHO05D006203 2.6e-34 148.7 81 87.7
Os09g0510200 Oryza sativa ssp. japonica HOM05D005009 ORTHO05D006203 2.6e-34 148.7 81 86.4
Solyc01g096610.4 Solanum lycopersicum HOM05D005009 ORTHO05D006203 3.4e-34 148.3 81 86.4
Sopen01g040340 Solanum pennellii HOM05D005009 ORTHO05D006203 3.4e-34 148.3 81 86.4
PGSC0003DMG401003286 Solanum tuberosum HOM05D005009 ORTHO05D006203 3.4e-34 148.3 81 86.4
THA.LOC104826749 Tarenaya hassleriana HOM05D005009 ORTHO05D006203 3.4e-34 148.3 81 85.2
MSTRG.20500 Avicennia marina HOM05D005009 ORTHO05D006203 4.4e-34 147.9 81 88.9
Ca_24007_v3 Cicer arietinum L. HOM05D005009 ORTHO05D006203 4.4e-34 147.9 81 87.7
COL.COLO4_32171 Corchorus olitorius HOM05D000011 ORTHO05D006203 4.4e-34 147.9 81 84.0
Nn7g36825 Nelumbo nucifera HOM05D005009 ORTHO05D006203 4.4e-34 147.9 81 88.9
DCAR_006603 Daucus carota HOM05D005009 ORTHO05D006203 5.7e-34 147.5 81 88.9
Migut.B01192 Erythranthe guttata HOM05D005009 ORTHO05D006203 7.5e-34 147.1 81 86.4
Aqoxy2G00437 Aquilegia oxysepala HOM05D005009 ORTHO05D006203 9.8e-34 146.7 81 87.7
Ciclev10002585m.g Citrus clementina HOM05D005009 ORTHO05D006203 9.8e-34 146.7 81 86.4
Lsat_1_v5_gn_1_117041 Lactuca sativa HOM05D005009 ORTHO05D006203 9.8e-34 146.7 81 86.4
GSVIVG01036607001 Vitis vinifera HOM05D005009 ORTHO05D006203 9.8e-34 146.7 81 88.9
SEGI_18977 Sequoiadendron giganteum HOM05D005009 ORTHO05D006203 1.3e-33 146.4 81 87.7
Glyma.09G090300 Glycine max HOM05D005009 ORTHO05D006203 1.7e-33 146.0 81 87.7
unitig_22.g5330 Utricularia gibba HOM05D005009 ORTHO05D006203 2.2e-33 145.6 82 86.6
ECA248G2538 Erigeron canadensis HOM05D005009 ORTHO05D006203 2.9e-33 145.2 81 86.4
TAR633G2352 Trochodendron aralioides HOM05D005009 ORTHO05D006203 4.9e-33 144.4 81 87.7
PSO384G0249 Papaver somniferum HOM05D005009 ORTHO05D006203 6.4e-33 144.1 81 87.7
Eucgr.G03210 Eucalyptus grandis HOM05D005009 ORTHO05D006203 8.3e-33 143.7 81 85.2
Dinv11234 Davidia involucrata HOM05D005009 ORTHO05D006203 1.4e-32 142.9 81 86.4
Glyma.13G184700 Glycine max HOM05D005009 ORTHO05D006203 1.4e-32 142.9 81 86.4
PSO339G0131 Papaver somniferum HOM05D005009 ORTHO05D006203 1.4e-32 142.9 81 86.4
BolC1t05245H Brassica oleracea HOM05D005009 ORTHO05D006203 2.4e-32 142.1 81 80.2
Sp3g10520 Schrenkiella parvula HOM05D005009 ORTHO05D006203 2.4e-32 142.1 81 81.5
Aa31LG3G6530 Aethionema arabicum HOM05D005009 ORTHO05D006203 3.2e-32 141.7 81 81.5
C01p53010 Brassica napus HOM05D005009 ORTHO05D006203 3.2e-32 141.7 81 80.2
SGA_v2.0_scaffold408G51079 Striga asiatica HOM05D005009 ORTHO05D006203 3.2e-32 141.7 81 84.0
AL3G23960 Arabidopsis lyrata HOM05D005009 ORTHO05D006203 4.1e-32 141.4 81 81.5
Carub.0003s1167 Capsella rubella HOM05D005009 ORTHO05D006203 5.4e-32 141.0 81 81.5
BcaB04g18685 Brassica carinata HOM05D005009 ORTHO05D006203 7.0e-32 140.6 81 80.2
Thhalv10021577m.g Eutrema salsugineum HOM05D005009 ORTHO05D006203 7.0e-32 140.6 81 80.2
HanXRQChr11g0341231 Helianthus annuus HOM05D005009 ORTHO05D006203 7.0e-32 140.6 79 86.1
BcaC01g04053 Brassica carinata HOM05D005009 ORTHO05D006203 1.2e-31 139.8 81 79.0
A03p37590 Brassica napus HOM05D005009 ORTHO05D006203 1.2e-31 139.8 81 79.0
C03p45580 Brassica napus HOM05D005009 ORTHO05D006203 1.2e-31 139.8 81 79.0
Mapoly0109s0062 Marchantia polymorpha HOM05D005009 ORTHO05D006203 1.2e-31 139.8 81 80.2
AT3G12300 Arabidopsis thaliana HOM05D005009 ORTHO05D006203 1.6e-31 139.4 81 80.2
BolC3t16835H Brassica oleracea HOM05D005009 ORTHO05D006203 1.6e-31 139.4 81 79.0
Cre07.g351650 Chlamydomonas reinhardtii HOM05D005009 ORTHO05D006203 2.0e-31 139.0 81 80.2
BcaC09g48230 Brassica carinata HOM05D005009 ORTHO05D006203 2.7e-31 138.7 79 81.0
A06p13990 Brassica napus HOM05D005009 ORTHO05D006203 5.9e-31 137.5 81 79.0
GSVIVG01028667001 Vitis vinifera HOM05D005009 ORTHO05D006203 1.3e-30 136.3 81 84.0
PRCOL_00001494 Prasinoderma coloniale HOM05D005009 ORTHO05D006203 8.6e-30 133.7 81 77.8
SMO137G0355 Selaginella moellendorffii HOM05D005009 ORTHO05D006203 1.1e-29 133.3 81 76.5
Pp3c16_8300 Physcomitrium patens HOM05D005009 ORTHO05D006203 3.3e-29 131.7 79 74.7
AagrBONN_evm.TU.Sc2ySwM_340.215 Anthoceros agrestis HOM05D005009 ORTHO05D006203 1.6e-28 129.4 81 75.3
MCO01G737 Micromonas commoda HOM05D005009 ORTHO05D006203 1.8e-27 125.9 79 73.4
SMO137G0211 Selaginella moellendorffii HOM05D005009 ORTHO05D006203 2.3e-27 125.6 81 69.1
Pp3c7_7130 Physcomitrium patens HOM05D005009 ORTHO05D006203 1.3e-25 119.8 81 66.7
Lj9A658G62 Lonicera japonica HOM05D005009 ORTHO05D006203 5.4e-24 114.4 81 70.4
SMO352G0037 Selaginella moellendorffii HOM05D005009 ORTHO05D006203 4.0e-19 98.2 78 55.1
Haze_26638 Corylus avellana HOM05D005009 ORTHO05D006203 8.9e-19 97.1 82 59.8
HPP92_011758 Vanilla planifolia HOM05D005009 ORTHO05D006203 6.4e-17 90.9 81 60.5
SMO232G0039 Selaginella moellendorffii HOM05D005009 ORTHO05D006203 1.1e-16 90.1 79 53.2
Prupe.3G123900 Prunus persica HOM05D005009 ORTHO05D006203 3.9e-14 81.6 47 85.1
ClCG05G014250 Citrullus lanatus HOM05D005009 ORTHO05D006203 1.8e-11 72.8 55 61.8
CDE08G0779 Ceratophyllum demersum HOM05D005009 ORTHO05D006203 2.2e-09 65.9 32 96.9
Oeu064146.2 Olea europaea HOM05D005009 ORTHO05D006203 3.8e-09 65.1 32 93.8
Pp3c25_460 Physcomitrium patens HOM05D005009 ORTHO05D006203 3.8e-09 65.1 66 45.5
Pp3c6_12450 Physcomitrium patens HOM05D005009 ORTHO05D006203 3.2e-08 62.0 75 41.3


User provided reference genes

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