Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc11g0006300 Simmondsia chinensis HOM05D007594 ORTHO05D009607 0.0e+00 1235.3 606 100.0
Dinv03295 Davidia involucrata HOM05D007594 ORTHO05D009607 2.8e-133 479.9 610 45.7
EL10Ac3g05954 Beta vulgaris HOM05D007594 ORTHO05D009607 1.8e-116 424.1 666 41.6
AUR62023865 Chenopodium quinoa HOM05D007594 ORTHO05D009607 1.8e-111 407.5 644 41.6
TAR633G1990 Trochodendron aralioides HOM05D007594 ORTHO05D009607 7.2e-105 385.6 628 40.0
Prupe.2G044000 Prunus persica HOM05D007594 ORTHO05D009607 2.3e-103 380.6 591 40.6
Hma1.2p1_1342F.1_g276950 Hydrangea macrophylla HOM05D007594 ORTHO05D009607 3.9e-103 379.8 601 41.4
MD00G1152500 Malus domestica HOM05D007594 ORTHO05D009607 1.1e-102 378.3 623 40.0
Potri.003G193100 Populus trichocarpa HOM05D007594 ORTHO05D009607 9.7e-102 375.2 586 40.8
Actinidia06215 Actinidia chinensis HOM05D007594 ORTHO05D009607 1.3e-101 374.8 607 38.7
AUR62002319 Chenopodium quinoa HOM05D007594 ORTHO05D009607 5.0e-98 362.8 650 38.6
Thecc.10G140800 Theobroma cacao HOM05D007594 ORTHO05D009607 1.2e-96 358.2 607 38.4
vmacro13773 Vaccinium macrocarpon HOM05D007594 ORTHO05D009607 1.0e-95 355.1 537 39.5
Manes.04G156000 Manihot esculenta HOM05D007594 ORTHO05D009607 1.1e-94 351.7 573 38.6
CiPaw.13G016300 Carya illinoinensis HOM05D007594 ORTHO05D009607 3.7e-93 346.7 601 38.3
GSVIVG01036598001 Vitis vinifera HOM05D007594 ORTHO05D009607 3.7e-93 346.7 381 49.1
RcHm_v2.0_Chr1g0327541 Rosa chinensis HOM05D007594 ORTHO05D009607 1.7e-90 337.8 598 38.3
Haze_02988 Corylus avellana HOM05D007594 ORTHO05D009607 2.1e-88 330.9 576 38.9
Gohir.A10G189500 Gossypium hirsutum HOM05D007594 ORTHO05D009607 2.1e-88 330.9 604 36.8
Gorai.011G220800 Gossypium raimondii HOM05D007594 ORTHO05D009607 1.4e-87 328.2 624 36.7
Duzib128G1040 Durio zibethinus HOM05D007594 ORTHO05D009607 2.6e-86 323.9 581 37.3
Gohir.D10G197300 Gossypium hirsutum HOM05D007594 ORTHO05D009607 1.1e-84 318.5 620 35.3
Aqoxy1G00415 Aquilegia oxysepala HOM05D007594 ORTHO05D009607 3.1e-84 317.0 616 37.2
Ciclev10003355m.g Citrus clementina HOM05D007594 ORTHO05D009607 1.6e-83 314.7 580 38.3
Lj3g0014217 Lotus japonicus HOM05D007594 ORTHO05D009607 3.5e-83 313.5 588 36.2
FvH4_7g03921 Fragaria vesca HOM05D007594 ORTHO05D009607 1.0e-82 312.0 599 36.9
Hma1.2p1_1730F.1_g299670 Hydrangea macrophylla HOM05D007594 ORTHO05D009607 1.1e-81 308.5 561 38.9
FAN06G1277 Fragaria x ananassa HOM05D007594 ORTHO05D009607 3.2e-81 307.0 595 36.3
Nn7g36922 Nelumbo nucifera HOM05D007594 ORTHO05D009607 1.6e-80 304.7 566 37.1
MBI13_g07373_MAGBIO Magnolia biondii HOM05D007594 ORTHO05D009607 3.0e-79 300.4 644 34.2
CsaV3_5G029660 Cucumis sativus L. HOM05D007594 ORTHO05D009607 8.8e-79 298.9 578 36.7
Peaxi162Scf02035g00032 Petunia axillaris HOM05D007594 ORTHO05D009607 5.7e-78 296.2 591 34.3
Sopen07g024530 Solanum pennellii HOM05D007594 ORTHO05D009607 7.5e-78 295.8 582 33.3
PGSC0003DMG400006140 Solanum tuberosum HOM05D007594 ORTHO05D009607 7.5e-78 295.8 598 33.8
Nitab4.5_0004358g0020 Nicotiana tabacum HOM05D007594 ORTHO05D009607 1.3e-77 295.0 587 33.9
Medtr3g013490 Medicago truncatula HOM05D007594 ORTHO05D009607 4.8e-77 293.1 611 33.2
Phvul.005G018200 Phaseolus vulgaris HOM05D007594 ORTHO05D009607 1.1e-76 292.0 594 35.4
Solyc07g048100.3 Solanum lycopersicum HOM05D007594 ORTHO05D009607 1.4e-76 291.6 581 32.9
FAN03G3082 Fragaria x ananassa HOM05D000688 ORTHO05D003888 2.4e-76 290.8 620 35.3
Glyma.11G170937 Glycine max HOM05D007594 ORTHO05D009607 4.1e-76 290.0 595 34.3
DCAR_006600 Daucus carota HOM05D007594 ORTHO05D009607 5.4e-76 289.7 568 34.3
CANSAT56G2828 Cannabis sativa HOM05D007594 ORTHO05D009607 7.0e-76 289.3 581 36.0
Nitab4.5_0004215g0020 Nicotiana tabacum HOM05D007594 ORTHO05D009607 3.5e-75 287.0 586 33.3
ClCG11G013140 Citrullus lanatus HOM05D007594 ORTHO05D009607 1.0e-74 285.4 582 35.7
CAN.G897.9 Capsicum annuum HOM05D007594 ORTHO05D009607 2.2e-74 284.3 582 33.0
TPR.G20651 Trifolium pratense HOM05D007594 ORTHO05D009607 5.0e-74 283.1 382 41.9
Lj9P657T24 Lonicera japonica HOM05D007594 ORTHO05D009607 1.1e-73 282.0 380 44.5
TWI63G1387 Tripterygium wilfordii HOM05D007594 ORTHO05D009607 1.9e-73 281.2 429 39.2
Psat5g215360 Pisum sativum HOM05D007594 ORTHO05D009607 4.2e-73 280.0 593 33.6
VMungo1080G0650 Vigna mungo HOM05D007594 ORTHO05D009607 7.2e-73 279.3 582 35.2
Cc00_g06100 Coffea canephora HOM05D007594 ORTHO05D009607 2.7e-72 277.3 580 33.8
PSO339G5236 Papaver somniferum HOM05D007594 ORTHO05D009607 4.7e-72 276.6 313 45.4
arahy.Tifrunner.gnm1.ann1.IJ2ITM Arachis hypogaea HOM05D007594 ORTHO05D009607 6.1e-72 276.2 555 34.4
arahy.Tifrunner.gnm1.ann1.HR2C9L Arachis hypogaea HOM05D007594 ORTHO05D009607 8.0e-72 275.8 555 34.1
Rhsim07G0071100 Rhododendron simsii HOM05D007594 ORTHO05D009607 1.4e-71 275.0 578 33.0
ATR0307G127 Amborella trichopoda HOM05D007594 ORTHO05D009607 2.2e-69 267.7 626 32.9
Sed0005696 Sechium edule HOM05D007594 ORTHO05D009607 3.8e-66 256.9 543 35.0
SalBow5G4015 Salvia bowleyana HOM05D007594 ORTHO05D009607 2.3e-63 247.7 662 30.5
SGA_v2.0_scaffold124G33645 Striga asiatica HOM05D007594 ORTHO05D009607 2.0e-62 244.6 437 33.9
PSO384G4678 Papaver somniferum HOM05D007594 ORTHO05D009607 1.3e-61 241.9 273 47.6
Migut.B01185 Erythranthe guttata HOM05D007594 ORTHO05D009607 4.1e-60 236.9 271 45.8
Eucgr.G03206 Eucalyptus grandis HOM05D007594 ORTHO05D009607 3.5e-59 233.8 223 51.6
THA.LOC104826746 Tarenaya hassleriana HOM05D007594 ORTHO05D009607 3.5e-59 233.8 342 43.0
Hund03165 Selenicereus undatus HOM05D007594 ORTHO05D009607 1.5e-57 228.4 481 36.0
FAN01G0543 Fragaria x ananassa HOM05D007594 ORTHO05D009607 2.1e-56 224.6 604 32.8
HanXRQChr05g0146261 Helianthus annuus HOM05D007594 ORTHO05D009607 1.4e-55 221.9 316 40.8
ECA246G0181 Erigeron canadensis HOM05D007594 ORTHO05D009607 1.8e-55 221.5 567 29.3
Hund03166 Selenicereus undatus HOM05D007594 ORTHO05D009607 1.8e-55 221.5 481 35.3
Nn032s41616 Nelumbo nucifera HOM05D007594 ORTHO05D009607 8.9e-55 219.2 181 58.0
Atru.chr12.1243 Acer truncatum HOM05D007594 ORTHO05D009607 9.8e-54 215.7 490 34.1
Lsat_1_v5_gn_1_118241 Lactuca sativa HOM05D007594 ORTHO05D009607 1.7e-53 214.9 227 45.4
Os03g0811200 Oryza sativa ssp. japonica HOM05D007594 ORTHO05D009607 7.0e-52 209.5 314 38.9
Zm00001eb062110 Zea mays HOM05D007594 ORTHO05D009607 5.0e-50 203.4 423 35.2
Hund03164 Selenicereus undatus HOM05D007594 ORTHO05D009607 5.2e-47 193.4 137 65.7
unitig_22.g5331 Utricularia gibba HOM05D007594 ORTHO05D009607 9.5e-41 172.6 252 41.3
Aqoxy1G00417 Aquilegia oxysepala HOM05D007594 ORTHO05D009607 1.8e-39 168.3 486 31.9
Ca_14092_v3 Cicer arietinum L. HOM05D007594 ORTHO05D009607 5.1e-34 150.2 441 30.4
Lalb_Chr24g0402821 Lupinus albus HOM05D007594 ORTHO05D009607 6.6e-34 149.8 146 52.7
Atru.chr12.1242 Acer truncatum HOM05D007594 ORTHO05D009607 1.9e-25 121.7 90 66.7
CSS0016538 Camellia sinensis var. sinensis HOM05D007594 ORTHO05D009607 3.3e-25 120.9 109 56.0
TPR.G1438 Trifolium pratense HOM05D007594 ORTHO05D009607 6.4e-21 106.7 433 29.1
MELO3C011810.2 Cucumis melo HOM05D007594 ORTHO05D009607 2.5e-17 94.7 397 28.0
Lalb_Chr24g0402831 Lupinus albus HOM05D007594 ORTHO05D009607 9.0e-15 86.3 417 24.9
Aqoxy1G00418 Aquilegia oxysepala HOM05D007594 ORTHO05D009607 7.1e-12 76.6 58 58.6
Lj2g0024514 Lotus japonicus HOM05D007594 ORTHO05D009607 6.0e-11 73.6 67 47.8
COL.COLO4_04921 Corchorus olitorius HOM05D007594 ORTHO05D009607 1.0e-10 72.8 62 50.0
vmacro13770 Vaccinium macrocarpon HOM05D007594 ORTHO05D009607 1.8e-10 72.0 54 61.1
SEGI_38959 Sequoiadendron giganteum HOM05D007594 ORTHO05D009607 2.3e-10 71.6 83 37.3
AagrBONN_evm.TU.Sc2ySwM_368.2306 Anthoceros agrestis HOM05D007594 ORTHO05D009607 8.7e-10 69.7 153 28.8
Ca_14091_v3 Cicer arietinum L. HOM05D007594 ORTHO05D009607 6.2e-08 63.5 379 25.6
CBR_g49793 Chara braunii HOM05D000019 ORTHO05D000048 5.3e-07 60.5 107 30.8
Nn7g38492 Nelumbo nucifera HOM05D007594 ORTHO05D009607 2.0e-06 58.5 300 25.0


User provided reference genes

Program Settings