Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc11g0006200 Simmondsia chinensis HOM05D000115 ORTHO05D387947 2.0e-52 208.8 101 100.0
Sc16g0008770 Simmondsia chinensis HOM05D000115 ORTHO05D000464 1.5e-07 59.7 70 51.4
Nn4g25780 Nelumbo nucifera HOM05D000115 ORTHO05D000464 2.0e-07 59.3 70 44.3
Duzib128G1017 Durio zibethinus HOM05D000115 ORTHO05D000464 5.7e-07 57.8 70 47.1
Lj1g0025519 Lotus japonicus HOM05D000115 ORTHO05D000464 5.7e-07 57.8 70 45.7
Thecc.05G314500 Theobroma cacao HOM05D000115 ORTHO05D000464 7.5e-07 57.4 70 48.6
TAR365G0125 Trochodendron aralioides HOM05D000115 ORTHO05D000464 7.5e-07 57.4 69 47.8
EL10Ac4g09900 Beta vulgaris HOM05D000115 ORTHO05D000464 9.7e-07 57.0 70 47.1
AUR62000744 Chenopodium quinoa HOM05D000115 ORTHO05D000464 9.7e-07 57.0 70 47.1
Ah.06g189890 Amaranthus hybridus HOM05D000115 ORTHO05D000464 1.3e-06 56.6 70 47.1
HanXRQChr16g0513501 Helianthus annuus HOM05D000115 ORTHO05D000464 1.3e-06 56.6 68 47.1
MD12G1210900 Malus domestica HOM05D000115 ORTHO05D000464 1.3e-06 56.6 70 44.3
PGR083G1035 Punica granatum HOM05D000115 ORTHO05D000464 1.3e-06 56.6 70 45.7
TAR636G1694 Trochodendron aralioides HOM05D000115 ORTHO05D002564 1.3e-06 56.6 70 45.7
Cpa.g.sc48.102 Carica papaya HOM05D000115 ORTHO05D000464 1.7e-06 56.2 68 47.1
AUR62005220 Chenopodium quinoa HOM05D000115 ORTHO05D000464 1.7e-06 56.2 70 47.1
COL.COLO4_10537 Corchorus olitorius HOM05D000115 ORTHO05D000464 1.7e-06 56.2 70 47.1
MD04G1083600 Malus domestica HOM05D000115 ORTHO05D010967 1.7e-06 56.2 70 44.3
MD04G1198300 Malus domestica HOM05D000115 ORTHO05D000464 1.7e-06 56.2 70 44.3
THA.LOC104802792 Tarenaya hassleriana HOM05D000115 ORTHO05D000464 1.7e-06 56.2 70 45.7
Aqoxy2G02930 Aquilegia oxysepala HOM05D000115 ORTHO05D000464 2.2e-06 55.8 70 45.7
MSTRG.5115 Avicennia marina HOM05D000115 ORTHO05D000464 2.2e-06 55.8 70 45.7
Dinv30827 Davidia involucrata HOM05D000115 ORTHO05D000464 2.2e-06 55.8 70 45.7
Migut.N02093 Erythranthe guttata HOM05D000115 ORTHO05D000464 2.2e-06 55.8 70 45.7
Nitab4.5_0005982g0010 Nicotiana tabacum HOM05D000115 ORTHO05D000464 2.2e-06 55.8 70 44.3
Peaxi162Scf00471g00810 Petunia axillaris HOM05D000115 ORTHO05D000464 2.2e-06 55.8 70 44.3
THA.LOC104818727 Tarenaya hassleriana HOM05D000115 ORTHO05D000464 2.2e-06 55.8 70 44.3
BcaB07g34205 Brassica carinata HOM05D000115 ORTHO05D000464 2.8e-06 55.5 68 47.1
FvH4_6g06810 Fragaria vesca HOM05D000115 ORTHO05D000464 2.8e-06 55.5 70 45.7
FAN14G2390 Fragaria x ananassa HOM05D000115 ORTHO05D000464 2.8e-06 55.5 70 45.7
Gohir.A11G294000 Gossypium hirsutum HOM05D000115 ORTHO05D000464 2.8e-06 55.5 77 45.5
Gohir.D11G309000 Gossypium hirsutum HOM05D000115 ORTHO05D000464 2.8e-06 55.5 77 45.5
Gorai.007G340900 Gossypium raimondii HOM05D000115 ORTHO05D000464 2.8e-06 55.5 77 45.5
RcHm_v2.0_Chr3g0456301 Rosa chinensis HOM05D000115 ORTHO05D000464 2.8e-06 55.5 70 45.7
MSTRG.27975 Avicennia marina HOM05D000115 ORTHO05D000464 3.7e-06 55.1 70 45.7
C02p58330 Brassica napus HOM05D000115 ORTHO05D000464 3.7e-06 55.1 68 47.1
BolC2t11897H Brassica oleracea HOM05D000115 ORTHO05D000464 3.7e-06 55.1 68 47.1
CANSAT54G0030 Cannabis sativa HOM05D000115 ORTHO05D000464 3.7e-06 55.1 69 47.8
Hund07107 Selenicereus undatus HOM05D000115 ORTHO05D000464 3.7e-06 55.1 70 45.7
Ciclev10001659m.g Citrus clementina HOM05D000115 ORTHO05D000464 4.8e-06 54.7 70 45.7
Manes.09G171600 Manihot esculenta HOM05D000115 ORTHO05D000464 4.8e-06 54.7 70 45.7
Sp3g04450 Schrenkiella parvula HOM05D000115 ORTHO05D000464 4.8e-06 54.7 70 45.7
SGA_v2.0_scaffold172G38994 Striga asiatica HOM05D000115 ORTHO05D000464 4.8e-06 54.7 70 44.3
A06p37300 Brassica napus HOM05D000115 ORTHO05D000464 6.3e-06 54.3 68 45.6
C07p41160 Brassica napus HOM05D000115 ORTHO05D000464 6.3e-06 54.3 68 45.6
BolC7t44644H Brassica oleracea HOM05D000115 ORTHO05D000464 6.3e-06 54.3 68 45.6
BraA06t26653Z Brassica rapa HOM05D000115 ORTHO05D000464 6.3e-06 54.3 68 45.6
CSS0048412 Camellia sinensis var. sinensis HOM05D000115 ORTHO05D000464 6.3e-06 54.3 70 44.3
FAN02G2798 Fragaria x ananassa HOM05D000115 ORTHO05D000464 6.3e-06 54.3 70 44.3
Hund21719 Selenicereus undatus HOM05D000115 ORTHO05D000464 6.3e-06 54.3 63 46.0
Ah.04g161360 Amaranthus hybridus HOM05D000115 ORTHO05D000464 8.2e-06 53.9 70 45.7
AT3G05580 Arabidopsis thaliana HOM05D000115 ORTHO05D000464 8.2e-06 53.9 68 45.6
CSS0005998 Camellia sinensis var. sinensis HOM05D000115 ORTHO05D000464 8.2e-06 53.9 70 44.3
Glyma.19G232300 Glycine max HOM05D000115 ORTHO05D000464 8.2e-06 53.9 70 44.3
HanXRQChr10g0299351 Helianthus annuus HOM05D000115 ORTHO05D000464 8.2e-06 53.9 68 48.5
HanXRQChr11g0339831 Helianthus annuus HOM05D000115 ORTHO05D000464 8.2e-06 53.9 70 44.3
QL03p019887 Quercus lobata HOM05D000115 ORTHO05D000464 8.2e-06 53.9 69 43.5
Rhsim05G0137700 Rhododendron simsii HOM05D000115 ORTHO05D000464 8.2e-06 53.9 63 46.0
SalBow3G2165 Salvia bowleyana HOM05D000115 ORTHO05D000464 8.2e-06 53.9 70 44.3
SalBow7G0476 Salvia bowleyana HOM05D000115 ORTHO05D000464 8.2e-06 53.9 70 44.3
vmacro19697 Vaccinium macrocarpon HOM05D000115 ORTHO05D000464 8.2e-06 53.9 70 44.3


User provided reference genes

Program Settings