Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc11g0006070 Simmondsia chinensis HOM05D004331 ORTHO05D004984 3.8e-216 754.6 392 100.0
Hund13431 Selenicereus undatus HOM05D004331 ORTHO05D004984 4.3e-135 485.3 412 64.6
AUR62032546 Chenopodium quinoa HOM05D004331 ORTHO05D004984 1.3e-131 473.8 412 63.3
EL10Ac2g02684 Beta vulgaris HOM05D004331 ORTHO05D004984 3.3e-127 459.1 400 62.5
ClCG11G005520 Citrullus lanatus HOM05D004331 ORTHO05D004984 2.6e-124 449.5 394 63.2
TWI73G1241 Tripterygium wilfordii HOM05D004331 ORTHO05D004984 3.2e-122 442.6 400 62.5
Manes.10G004100 Manihot esculenta HOM05D004331 ORTHO05D004984 2.1e-121 439.9 394 62.7
Ciclev10031884m.g Citrus clementina HOM05D004331 ORTHO05D004984 1.5e-119 433.7 393 62.3
Cpa.g.sc19.35 Carica papaya HOM05D004331 ORTHO05D004984 2.0e-116 423.3 405 59.0
MELO3C022105.2 Cucumis melo HOM05D004331 ORTHO05D004984 1.9e-114 416.8 363 62.5
Sed0000286 Sechium edule HOM05D004331 ORTHO05D004984 4.2e-114 415.6 392 59.4
TAR636G1774 Trochodendron aralioides HOM05D004331 ORTHO05D004984 1.2e-113 414.1 333 65.8
CsaV3_5G039270 Cucumis sativus L. HOM05D004331 ORTHO05D004984 4.6e-113 412.1 393 58.8
Atru.chr12.214 Acer truncatum HOM05D004331 ORTHO05D004984 7.9e-113 411.4 363 62.8
MSTRG.156 Avicennia marina HOM05D004331 ORTHO05D004984 1.5e-111 407.1 365 62.2
Dinv34508 Davidia involucrata HOM05D004331 ORTHO05D004984 1.5e-111 407.1 389 60.4
Duzib114G0903 Durio zibethinus HOM05D004331 ORTHO05D004984 3.3e-111 406.0 387 58.7
CANSAT56G0386 Cannabis sativa HOM05D004331 ORTHO05D004984 1.6e-110 403.7 268 73.9
Duzib128G0601 Durio zibethinus HOM05D004331 ORTHO05D004984 1.6e-110 403.7 284 70.4
C04p02240 Brassica napus HOM05D004331 ORTHO05D004984 3.1e-109 399.4 347 61.1
Nn5g26801 Nelumbo nucifera HOM05D004331 ORTHO05D004984 4.1e-109 399.1 411 56.7
Potri.019G062200 Populus trichocarpa HOM05D004331 ORTHO05D004984 2.0e-108 396.7 363 61.2
THA.LOC104814366 Tarenaya hassleriana HOM05D004331 ORTHO05D004984 4.5e-108 395.6 372 59.4
Peaxi162Scf00073g02119 Petunia axillaris HOM05D004331 ORTHO05D004984 5.9e-108 395.2 361 62.9
Sp4g23120 Schrenkiella parvula HOM05D004331 ORTHO05D004984 1.3e-107 394.0 376 58.5
Nitab4.5_0009756g0010 Nicotiana tabacum HOM05D004331 ORTHO05D004984 2.9e-107 392.9 392 59.2
Hma1.2p1_0264F.1_g105850 Hydrangea macrophylla HOM05D004331 ORTHO05D004984 3.8e-107 392.5 250 77.6
Sabra19G0081100 Salix brachista HOM05D004331 ORTHO05D004984 3.8e-107 392.5 384 58.9
AT2G40800 Arabidopsis thaliana HOM05D004331 ORTHO05D004984 1.1e-106 391.0 375 59.2
HanXRQChr07g0204811 Helianthus annuus HOM05D004331 ORTHO05D004984 1.1e-106 391.0 329 64.4
Sabra19G0075700 Salix brachista HOM05D004331 ORTHO05D004984 1.1e-106 391.0 384 58.6
AL4G38690 Arabidopsis lyrata HOM05D004331 ORTHO05D004984 1.9e-106 390.2 374 58.3
Eucgr.G03152 Eucalyptus grandis HOM05D004331 ORTHO05D004984 3.2e-106 389.4 374 55.6
MD07G1237400 Malus domestica HOM05D004331 ORTHO05D004984 4.2e-106 389.0 359 59.6
VMungo1309G0248 Vigna mungo HOM05D004331 ORTHO05D004984 4.2e-106 389.0 268 72.8
PGR142G0580 Punica granatum HOM05D004331 ORTHO05D004984 7.2e-106 388.3 359 58.8
Thecc.10G186200 Theobroma cacao HOM05D004331 ORTHO05D004984 7.2e-106 388.3 359 58.5
QL08p065166 Quercus lobata HOM05D004331 ORTHO05D004984 1.6e-105 387.1 247 76.9
AT3G56430 Arabidopsis thaliana HOM05D004331 ORTHO05D004984 2.7e-105 386.3 265 72.1
Migut.F00564 Erythranthe guttata HOM05D004331 ORTHO05D004984 2.7e-105 386.3 368 59.2
Thhalv10016808m.g Eutrema salsugineum HOM05D004331 ORTHO05D004984 2.7e-105 386.3 369 56.6
CARHR135900 Cardamine hirsuta HOM05D004331 ORTHO05D004984 3.6e-105 386.0 372 58.1
MD01G1171000 Malus domestica HOM05D004331 ORTHO05D004984 3.6e-105 386.0 359 59.6
THA.LOC104824369 Tarenaya hassleriana HOM05D004331 ORTHO05D004984 3.6e-105 386.0 370 58.1
Carub.0005s2321 Capsella rubella HOM05D004331 ORTHO05D004984 4.6e-105 385.6 266 71.4
COL.COLO4_19485 Corchorus olitorius HOM05D004331 ORTHO05D004984 7.9e-105 384.8 257 74.7
Psat5g069640 Pisum sativum HOM05D004331 ORTHO05D004984 1.0e-104 384.4 277 71.1
AL5G37760 Arabidopsis lyrata HOM05D004331 ORTHO05D004984 1.3e-104 384.0 265 71.7
Glyma.06G141000 Glycine max HOM05D004331 ORTHO05D004984 1.3e-104 384.0 240 76.7
Lj1A969T93 Lonicera japonica HOM05D004331 ORTHO05D004984 1.8e-104 383.6 380 58.7
Lalb_Chr11g0067651 Lupinus albus HOM05D004331 ORTHO05D004984 2.3e-104 383.3 332 63.0
Phvul.009G042200 Phaseolus vulgaris HOM05D004331 ORTHO05D004984 2.3e-104 383.3 245 75.1
BcaC02g12734 Brassica carinata HOM05D004331 ORTHO05D004984 3.9e-104 382.5 278 68.0
DCAR_020157 Daucus carota HOM05D004331 ORTHO05D004984 3.9e-104 382.5 360 60.6
Ca_16853_v3 Cicer arietinum L. HOM05D004331 ORTHO05D004984 5.1e-104 382.1 261 72.8
Ca_29501_v3 Cicer arietinum L. HOM05D004331 ORTHO05D004984 5.1e-104 382.1 261 72.8
arahy.Tifrunner.gnm1.ann1.M9I45E Arachis hypogaea HOM05D004331 ORTHO05D004984 8.7e-104 381.3 254 73.6
Eucgr.L02349 Eucalyptus grandis HOM05D004331 ORTHO05D004984 8.7e-104 381.3 291 64.9
arahy.Tifrunner.gnm1.ann1.J1TSCZ Arachis hypogaea HOM05D004331 ORTHO05D004984 1.1e-103 380.9 364 58.5
RcHm_v2.0_Chr1g0372681 Rosa chinensis HOM05D004331 ORTHO05D004984 1.5e-103 380.6 362 59.7
Aa31LG10G11310 Aethionema arabicum HOM05D004331 ORTHO05D004984 1.9e-103 380.2 376 56.4
MBI15_g36678_MAGBIO Magnolia biondii HOM05D004331 ORTHO05D004984 5.7e-103 378.6 253 75.9
SGA_v2.0_scaffold397G50761 Striga asiatica HOM05D004331 ORTHO05D004984 5.7e-103 378.6 329 63.8
A05p01900 Brassica napus HOM05D004331 ORTHO05D004984 7.4e-103 378.3 339 59.9
BraA05t19188Z Brassica rapa HOM05D004331 ORTHO05D004984 7.4e-103 378.3 339 59.9
FvH4_7g26230 Fragaria vesca HOM05D004331 ORTHO05D004984 1.3e-102 377.5 243 75.7
FAN06G3213 Fragaria x ananassa HOM05D004331 ORTHO05D004984 1.3e-102 377.5 243 75.7
CAN.G30.2 Capsicum annuum HOM05D004331 ORTHO05D004984 2.8e-102 376.3 253 74.7
Haze_17376 Corylus avellana HOM05D004331 ORTHO05D004984 2.8e-102 376.3 365 57.5
FAN10G3590 Fragaria x ananassa HOM05D004331 ORTHO05D004984 3.7e-102 375.9 243 75.3
Glyma.04G223900 Glycine max HOM05D004331 ORTHO05D004984 4.8e-102 375.6 240 75.0
Sp5g06060 Schrenkiella parvula HOM05D004331 ORTHO05D004984 6.3e-102 375.2 390 55.6
BolC4t21871H Brassica oleracea HOM05D004331 ORTHO05D004984 8.2e-102 374.8 323 60.7
Gohir.D10G184000 Gossypium hirsutum HOM05D004331 ORTHO05D004984 8.2e-102 374.8 300 63.3
Gorai.011G206200 Gossypium raimondii HOM05D004331 ORTHO05D004984 8.2e-102 374.8 300 63.3
ATR1127G084 Amborella trichopoda HOM05D004331 ORTHO05D004984 1.1e-101 374.4 280 69.3
CSS0028422 Camellia sinensis var. sinensis HOM05D004331 ORTHO05D004984 1.1e-101 374.4 369 58.0
Medtr3g093690 Medicago truncatula HOM05D004331 ORTHO05D004984 1.1e-101 374.4 271 70.5
TPR.G13966 Trifolium pratense HOM05D004331 ORTHO05D004984 1.1e-101 374.4 261 72.4
CARHR166560 Cardamine hirsuta HOM05D004331 ORTHO05D004984 1.4e-101 374.0 254 71.7
Cfa001189 Carpinus fangiana HOM05D004331 ORTHO05D004984 2.4e-101 373.2 232 78.0
Gohir.A10G177400 Gossypium hirsutum HOM05D004331 ORTHO05D004984 9.1e-101 371.3 255 70.6
Actinidia01013 Actinidia chinensis HOM05D004331 ORTHO05D004984 1.2e-100 370.9 369 58.3
Sopen03g025450 Solanum pennellii HOM05D004331 ORTHO05D004984 2.0e-100 370.2 256 72.3
Thhalv10006036m.g Eutrema salsugineum HOM05D004331 ORTHO05D004984 4.5e-100 369.0 371 55.5
Solyc03g095470.3 Solanum lycopersicum HOM05D004331 ORTHO05D004984 4.5e-100 369.0 256 71.9
PGSC0003DMG400005253 Solanum tuberosum HOM05D004331 ORTHO05D004984 1.3e-99 367.5 362 58.3
Lsat_1_v5_gn_2_127600 Lactuca sativa HOM05D004331 ORTHO05D004984 1.7e-99 367.1 259 71.4
A09p49380 Brassica napus HOM05D004331 ORTHO05D004984 2.2e-99 366.7 338 60.1
BraA09t40391Z Brassica rapa HOM05D004331 ORTHO05D004984 2.2e-99 366.7 338 60.1
Actinidia07780 Actinidia chinensis HOM05D004331 ORTHO05D004984 2.9e-99 366.3 257 71.6
vmacro09950 Vaccinium macrocarpon HOM05D004331 ORTHO05D004984 5.0e-99 365.5 397 53.9
Aqoxy4G03301 Aquilegia oxysepala HOM05D004331 ORTHO05D004984 6.5e-99 365.2 233 75.5
SalBow3G0869 Salvia bowleyana HOM05D004331 ORTHO05D004984 1.4e-98 364.0 295 65.1
Lj1g0025811 Lotus japonicus HOM05D004331 ORTHO05D004984 1.9e-98 363.6 254 70.1
Os01g0168300 Oryza sativa ssp. japonica HOM05D004331 ORTHO05D004984 1.9e-98 363.6 264 70.8
Rhsim09G0186700 Rhododendron simsii HOM05D004331 ORTHO05D004984 2.5e-98 363.2 298 65.1
unitig_88.g27825 Utricularia gibba HOM05D004331 ORTHO05D004984 9.4e-98 361.3 300 63.7
PSO017G4126 Papaver somniferum HOM05D004331 ORTHO05D004984 2.3e-96 356.7 285 64.2
HPP92_012570 Vanilla planifolia HOM05D004331 ORTHO05D004984 5.1e-96 355.5 248 69.4
Lalb_Chr08g0239281 Lupinus albus HOM05D004331 ORTHO05D004984 8.8e-96 354.8 246 71.5
PSO170G2208 Papaver somniferum HOM05D004331 ORTHO05D004984 8.8e-96 354.8 282 64.2
SEGI_36006 Sequoiadendron giganteum HOM05D004331 ORTHO05D004984 8.8e-96 354.8 260 68.1
BolC8t50795H Brassica oleracea HOM05D004331 ORTHO05D004984 4.8e-94 349.0 229 74.2
ECA238G1814 Erigeron canadensis HOM05D004331 ORTHO05D004984 3.8e-91 339.3 236 71.2
Dinv21866 Davidia involucrata HOM05D004331 ORTHO05D004984 5.5e-90 335.5 201 82.1
SGA_v2.0_scaffold60G20876 Striga asiatica HOM05D004331 ORTHO05D004984 5.5e-90 335.5 250 66.8
Pp3c7_18440 Physcomitrium patens HOM05D004331 ORTHO05D004984 2.6e-87 326.6 257 64.2
AagrBONN_evm.TU.Sc2ySwM_340.90 Anthoceros agrestis HOM05D004331 ORTHO05D004984 2.2e-86 323.6 268 63.1
BcaC07g39957 Brassica carinata HOM05D004331 ORTHO05D004984 2.0e-84 317.0 362 53.6
Actinidia13632 Actinidia chinensis HOM05D004331 ORTHO05D004984 5.9e-84 315.5 241 69.7
GSVIVG01032862001 Vitis vinifera HOM05D004331 ORTHO05D004984 5.0e-83 312.4 178 84.8
Pp3c1_5190 Physcomitrium patens HOM05D004331 ORTHO05D004984 1.5e-82 310.8 257 61.5
Mapoly0158s0020 Marchantia polymorpha HOM05D004331 ORTHO05D004984 1.9e-82 310.5 247 62.3
Cc02_g05110 Coffea canephora HOM05D004331 ORTHO05D004984 4.7e-81 305.8 179 82.7
FAN01G2544 Fragaria x ananassa HOM05D004331 ORTHO05D004984 1.4e-80 304.3 181 82.3
C08p31740 Brassica napus HOM05D004331 ORTHO05D004984 2.4e-77 293.5 362 51.9
SMO199G0115 Selaginella moellendorffii HOM05D004331 ORTHO05D004984 3.5e-76 289.7 239 62.3
SMO361G0183 Selaginella moellendorffii HOM05D004331 ORTHO05D004984 3.5e-76 289.7 238 62.6
CiPaw.02G199300 Carya illinoinensis HOM05D004331 ORTHO05D004984 7.2e-74 282.0 302 55.6
CBR_g29882 Chara braunii HOM05D004331 ORTHO05D004984 1.6e-73 280.8 213 64.8
Oeu039397.2 Olea europaea HOM05D004331 ORTHO05D004984 3.4e-71 273.1 193 73.1
Nitab4.5_0018056g0010 Nicotiana tabacum HOM05D004331 ORTHO05D004984 6.3e-70 268.9 302 54.0
AUR62030578 Chenopodium quinoa HOM05D004331 ORTHO05D004984 2.1e-65 253.8 182 72.5
Manes.03G048500 Manihot esculenta HOM05D004331 ORTHO05D004984 1.2e-63 248.1 395 43.8
CiPaw.01G307700 Carya illinoinensis HOM05D004331 ORTHO05D004984 3.7e-62 243.0 159 75.5
Zm00001eb336450 Zea mays HOM05D004331 ORTHO05D004984 6.3e-62 242.3 153 77.8
Ah.10g029610 Amaranthus hybridus HOM05D000033 ORTHO05D000913 1.1e-58 231.5 151 76.2
AUR62030577 Chenopodium quinoa HOM05D004331 ORTHO05D004984 4.3e-58 229.6 232 56.5
Ah.10g029620 Amaranthus hybridus HOM05D004331 ORTHO05D004984 4.4e-55 219.5 228 55.3
Carub.0004s2310 Capsella rubella HOM05D004331 ORTHO05D004984 3.2e-53 213.4 369 40.7
SMO361G0787 Selaginella moellendorffii HOM05D004331 ORTHO05D004984 1.7e-51 207.6 226 47.8
SMO361G0173 Selaginella moellendorffii HOM05D004331 ORTHO05D004984 5.0e-51 206.1 226 47.3
Prupe.2G266500 Prunus persica HOM05D004331 ORTHO05D004984 1.5e-50 204.5 362 40.3
BcaC09g50949 Brassica carinata HOM05D004331 ORTHO05D004984 6.2e-49 199.1 131 74.8
BcaC04g21857 Brassica carinata HOM05D004331 ORTHO05D004984 1.1e-48 198.4 131 74.0
BcaC02g11378 Brassica carinata HOM05D004331 ORTHO05D004984 4.0e-48 196.4 131 74.0
C04p16400 Brassica napus HOM05D004331 ORTHO05D004984 4.0e-48 196.4 131 74.0
C09p26570 Brassica napus HOM05D004331 ORTHO05D004984 6.8e-48 195.7 131 73.3
BolC9t55553H Brassica oleracea HOM05D004331 ORTHO05D004984 6.8e-48 195.7 131 73.3
MSTRG.8387 Avicennia marina HOM05D004331 ORTHO05D004984 2.3e-43 180.6 286 43.0
BcaC09g50388 Brassica carinata HOM05D004331 ORTHO05D004984 1.5e-42 177.9 131 67.2
BolC1t02551H Brassica oleracea HOM05D004331 ORTHO05D004984 7.3e-42 175.6 131 66.4
PRCOL_00001688 Prasinoderma coloniale HOM05D004331 ORTHO05D004984 6.2e-41 172.6 231 42.4
C01p26060 Brassica napus HOM05D004331 ORTHO05D004984 8.1e-41 172.2 131 65.6
Cre05.g232752 Chlamydomonas reinhardtii HOM05D004331 ORTHO05D004984 5.8e-39 166.0 275 37.8
C01p18940 Brassica napus HOM05D004331 ORTHO05D004984 1.3e-38 164.9 102 73.5
BolC1t01820H Brassica oleracea HOM05D004331 ORTHO05D004984 1.3e-38 164.9 102 73.5
C03p81590 Brassica napus HOM05D004331 ORTHO05D004984 7.8e-36 155.6 103 76.7
BolC3t20429H Brassica oleracea HOM05D004331 ORTHO05D004984 7.8e-36 155.6 103 76.7
Actinidia31642 Actinidia chinensis HOM05D004331 ORTHO05D004984 5.1e-35 152.9 163 55.2
BcaC01g00580 Brassica carinata HOM05D003032 ORTHO05D003456 1.1e-34 151.8 103 74.8
SHI31864 Sapria himalayana HOM05D004331 ORTHO05D004984 2.5e-34 150.6 91 79.1
BcaC04g23398 Brassica carinata HOM05D004331 ORTHO05D004984 2.9e-30 137.1 110 61.8
Eucgr.G03162 Eucalyptus grandis HOM05D004331 ORTHO05D004984 2.9e-30 137.1 217 41.9
CiPaw.01G307900 Carya illinoinensis HOM05D004331 ORTHO05D004984 4.9e-30 136.3 219 45.2
HPP92_012539 Vanilla planifolia HOM05D004331 ORTHO05D004984 4.6e-28 129.8 143 53.1
MBI15_g10655_MAGBIO Magnolia biondii HOM05D004331 ORTHO05D004984 1.1e-26 125.2 96 67.7
Zm00001eb123190 Zea mays HOM05D004331 ORTHO05D004984 3.1e-24 117.1 107 57.9
BolC9t53789H Brassica oleracea HOM05D004331 ORTHO05D004984 7.1e-21 105.9 63 79.4
SHI31863 Sapria himalayana HOM05D004331 ORTHO05D004984 7.1e-21 105.9 66 74.2
SHI31865 Sapria himalayana HOM05D004331 ORTHO05D004984 1.6e-20 104.8 94 55.3
VMungo0540G1227 Vigna mungo HOM05D004331 ORTHO05D004984 3.5e-20 103.6 78 69.2
Aqoxy4G02083 Aquilegia oxysepala HOM05D004331 ORTHO05D004984 3.0e-19 100.5 63 73.0
MCO04G099 Micromonas commoda HOM05D004331 ORTHO05D004984 1.1e-18 98.6 212 30.7
C08p13890 Brassica napus HOM05D013285 ORTHO05D004984 3.4e-15 87.0 101 50.5
BraA04t18575Z Brassica rapa HOM05D004331 ORTHO05D016805 6.4e-14 82.8 44 88.6
BolC4t28360H Brassica oleracea HOM05D004331 ORTHO05D004984 1.0e-11 75.5 68 57.4


User provided reference genes

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