Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc11g0006040 Simmondsia chinensis HOM05D007120 ORTHO05D008881 3.1e-34 147.9 75 100.0
PGSC0003DMG400020601 Solanum tuberosum HOM05D007120 ORTHO05D008881 1.3e-11 72.8 45 71.1
Hund13439 Selenicereus undatus HOM05D007120 ORTHO05D008881 2.8e-11 71.6 40 82.5
Nn2g10275 Nelumbo nucifera HOM05D007120 ORTHO05D008881 3.7e-11 71.2 47 74.5
Hund15797 Selenicereus undatus HOM05D007120 ORTHO05D008881 6.3e-11 70.5 41 80.5
Nitab4.5_0012297g0020 Nicotiana tabacum HOM05D007120 ORTHO05D008881 1.8e-10 68.9 52 61.5
Peaxi162Scf00073g02342 Petunia axillaris HOM05D007120 ORTHO05D008881 2.4e-10 68.6 45 71.1
Solyc03g095730.4 Solanum lycopersicum HOM05D007120 ORTHO05D008881 3.1e-10 68.2 41 73.2
Lj1A968T57 Lonicera japonica HOM05D007120 ORTHO05D008881 4.1e-10 67.8 43 74.4
Nitab4.5_0000171g0210 Nicotiana tabacum HOM05D007120 ORTHO05D008881 5.3e-10 67.4 45 66.7
Sopen07g008940 Solanum pennellii HOM05D007120 ORTHO05D008881 9.1e-10 66.6 40 72.5
Oeu006064.1 Olea europaea HOM05D007120 ORTHO05D008881 1.6e-09 65.9 47 63.8
EL10Ac2g02666 Beta vulgaris HOM05D007120 ORTHO05D008881 2.0e-09 65.5 47 70.2
CAN.G1229.12 Capsicum annuum HOM05D007120 ORTHO05D008881 2.0e-09 65.5 45 64.4
Haze_17366 Corylus avellana HOM05D006907 ORTHO05D008598 2.0e-09 65.5 47 66.0
HanXRQChr10g0312991 Helianthus annuus HOM05D007120 ORTHO05D008881 4.5e-09 64.3 41 68.3
MBI15_g39383_MAGBIO Magnolia biondii HOM05D007120 ORTHO05D008881 4.5e-09 64.3 43 67.4
TAR369G0939 Trochodendron aralioides HOM05D007120 ORTHO05D008881 1.0e-08 63.2 47 63.8
MD01G1169000 Malus domestica HOM05D007120 ORTHO05D008881 1.3e-08 62.8 37 73.0
MD07G1234900 Malus domestica HOM05D007120 ORTHO05D008881 1.7e-08 62.4 37 73.0
Nitab4.5_0011372g0020 Nicotiana tabacum HOM05D007120 ORTHO05D008881 2.2e-08 62.0 37 73.0
Peaxi162Scf00184g00003 Petunia axillaris HOM05D007120 ORTHO05D008881 2.2e-08 62.0 42 66.7
Nn5g26831 Nelumbo nucifera HOM05D007120 ORTHO05D008881 2.9e-08 61.6 42 66.7
MSTRG.27254 Avicennia marina HOM05D007120 ORTHO05D008881 5.0e-08 60.8 47 61.7
CsaV3_6G002350 Cucumis sativus L. HOM05D007120 ORTHO05D008881 5.0e-08 60.8 42 69.0
GSVIVG01032659001 Vitis vinifera HOM05D007120 ORTHO05D008881 5.0e-08 60.8 37 78.4
Gohir.D13G008000 Gossypium hirsutum HOM05D007120 ORTHO05D008881 6.5e-08 60.5 42 71.4
Gorai.013G008400 Gossypium raimondii HOM05D007120 ORTHO05D008881 6.5e-08 60.5 42 71.4
Nitab4.5_0000375g0220 Nicotiana tabacum HOM05D007120 ORTHO05D008881 8.5e-08 60.1 37 70.3
Duzib128G0262 Durio zibethinus HOM05D007120 ORTHO05D008881 1.5e-07 59.3 41 65.9
Cfa001199 Carpinus fangiana HOM05D007120 ORTHO05D008881 1.9e-07 58.9 47 59.6
Cc02_g05250 Coffea canephora HOM05D007120 ORTHO05D008881 2.5e-07 58.5 44 61.4
Gohir.A13G007800 Gossypium hirsutum HOM05D007120 ORTHO05D008881 2.5e-07 58.5 42 69.0
HanXRQChr02g0048061 Helianthus annuus HOM05D007120 ORTHO05D008881 2.5e-07 58.5 42 61.9
CSS0015321 Camellia sinensis var. sinensis HOM05D007120 ORTHO05D008881 3.2e-07 58.2 37 70.3
MELO3C020013.2 Cucumis melo HOM05D007120 ORTHO05D008881 4.2e-07 57.8 40 67.5
Aqoxy4G03269 Aquilegia oxysepala HOM05D007120 ORTHO05D008881 5.5e-07 57.4 45 64.4
CiPaw.14G049800 Carya illinoinensis HOM05D007120 ORTHO05D008881 7.2e-07 57.0 45 57.8
RcHm_v2.0_Chr1g0372461 Rosa chinensis HOM05D007120 ORTHO05D008881 9.4e-07 56.6 38 71.1
RcHm_v2.0_Chr7g0235281 Rosa chinensis HOM05D007120 ORTHO05D008881 9.4e-07 56.6 42 66.7
RcHm_v2.0_Chr7g0235311 Rosa chinensis HOM05D007120 ORTHO05D008881 9.4e-07 56.6 42 66.7
ClCG11G005640 Citrullus lanatus HOM05D007120 ORTHO05D008881 1.2e-06 56.2 43 62.8
Manes.07G142200 Manihot esculenta HOM05D007120 ORTHO05D008881 1.6e-06 55.8 42 61.9
Potri.019G059500 Populus trichocarpa HOM05D007120 ORTHO05D008881 1.6e-06 55.8 42 66.7
Thecc.10G184500 Theobroma cacao HOM05D007120 ORTHO05D008881 1.6e-06 55.8 42 66.7
Manes.10G002800 Manihot esculenta HOM05D007120 ORTHO05D008881 2.7e-06 55.1 39 61.5
COL.COLO4_19468 Corchorus olitorius HOM05D007120 ORTHO05D008881 3.6e-06 54.7 47 63.8
Migut.F00570 Erythranthe guttata HOM05D007120 ORTHO05D008881 3.6e-06 54.7 42 64.3
Os07g0680300 Oryza sativa ssp. japonica HOM05D007120 ORTHO05D008881 3.6e-06 54.7 42 61.9
HPP92_000774 Vanilla planifolia HOM05D007120 ORTHO05D008881 3.6e-06 54.7 41 61.0
HPP92_026799 Vanilla planifolia HOM05D007120 ORTHO05D008881 3.6e-06 54.7 41 61.0
Prupe.2G265200 Prunus persica HOM05D007120 ORTHO05D008881 6.1e-06 53.9 36 63.9
FAN01G0895 Fragaria x ananassa HOM05D007120 ORTHO05D008881 8.0e-06 53.5 38 71.1
Lsat_1_v5_gn_6_11060 Lactuca sativa HOM05D007120 ORTHO05D008881 8.0e-06 53.5 42 57.1
TAR633G1173 Trochodendron aralioides HOM05D009315 ORTHO05D008839 8.0e-06 53.5 36 66.7


User provided reference genes

Program Settings