Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc11g0005930 Simmondsia chinensis HOM05D010414 ORTHO05D000385 3.2e-98 361.7 174 100.0
Sc07g0004310 Simmondsia chinensis HOM05D010414 ORTHO05D000385 1.6e-49 199.9 124 75.8
Sc19g0006190 Simmondsia chinensis HOM05D010414 ORTHO05D000385 4.4e-39 165.2 106 72.6
Sc11g0003700 Simmondsia chinensis HOM05D010414 ORTHO05D000385 1.3e-27 127.1 89 66.3
Sc07g0004450 Simmondsia chinensis HOM05D010414 ORTHO05D000385 2.8e-25 119.4 162 46.9
Sc07g0005190 Simmondsia chinensis HOM05D010414 ORTHO05D000385 2.8e-25 119.4 147 51.0
Sc06g0003990 Simmondsia chinensis HOM05D004615 ORTHO05D000385 2.0e-20 103.2 61 70.5
Solyc05g150139.1 Solanum lycopersicum HOM05D008041 ORTHO05D000385 7.8e-20 101.3 130 36.2
Sc01g0006220 Simmondsia chinensis HOM05D004615 ORTHO05D000385 6.6e-19 98.2 61 67.2
Sc02g0004540 Simmondsia chinensis HOM05D010414 ORTHO05D000385 8.6e-19 97.8 72 66.7
EL10Ac7g17658 Beta vulgaris HOM05D004615 ORTHO05D000385 1.9e-18 96.7 124 40.3
Sc08g0005160 Simmondsia chinensis HOM05D010414 ORTHO05D000385 3.6e-17 92.4 51 86.3
Sc05g0004900 Simmondsia chinensis HOM05D010414 ORTHO05D000385 8.0e-17 91.3 53 75.5
Sc20g0003820 Simmondsia chinensis HOM05D004615 ORTHO05D000385 5.2e-16 88.6 61 62.3
PGSC0003DMG400034515 Solanum tuberosum HOM05D008041 ORTHO05D000385 2.0e-15 86.7 113 37.2
EL10Ac1g01751 Beta vulgaris HOM05D004615 ORTHO05D000385 7.5e-15 84.7 166 30.7
Sc21g0002620 Simmondsia chinensis HOM05D010414 ORTHO05D000385 8.3e-14 81.3 119 44.5
AUR62027501 Chenopodium quinoa HOM05D004615 ORTHO05D000385 2.4e-13 79.7 123 32.5
EL10Ac1g01684 Beta vulgaris HOM05D004615 ORTHO05D000385 5.4e-13 78.6 191 27.7
EL10Ac5g11185 Beta vulgaris HOM05D004615 ORTHO05D000385 7.0e-13 78.2 191 27.7
Sc18g0005230 Simmondsia chinensis HOM05D010414 ORTHO05D000385 7.0e-13 78.2 71 59.2
EL10Ac2g03160 Beta vulgaris HOM05D004615 ORTHO05D000385 1.2e-12 77.4 153 29.4
EL10Ac9g22640 Beta vulgaris HOM05D004615 ORTHO05D000385 1.2e-12 77.4 191 27.7
AUR62040424 Chenopodium quinoa HOM05D004615 ORTHO05D000385 1.6e-12 77.0 150 30.7
EL10Ac7g17419 Beta vulgaris HOM05D004615 ORTHO05D000385 2.0e-12 76.6 191 27.2
EL10As16g24148 Beta vulgaris HOM05D004615 ORTHO05D000385 2.0e-12 76.6 191 27.7
Sc11g0005200 Simmondsia chinensis HOM05D014970 ORTHO05D019369 2.7e-12 76.3 140 31.4
EL10Ac4g08049 Beta vulgaris HOM05D004615 ORTHO05D000385 3.5e-12 75.9 191 27.2
AUR62031864 Chenopodium quinoa HOM05D004615 ORTHO05D000385 4.6e-12 75.5 112 34.8
AUR62015616 Chenopodium quinoa HOM05D004615 ORTHO05D000385 7.8e-12 74.7 161 29.2
EL10Ac6g14405 Beta vulgaris HOM05D004615 ORTHO05D000385 1.0e-11 74.3 165 29.1
PGSC0003DMG400042507 Solanum tuberosum HOM05D007930 ORTHO05D007166 1.0e-11 74.3 120 33.3
Sc14g0005820 Simmondsia chinensis HOM05D010414 ORTHO05D000385 1.3e-11 73.9 59 55.9
Solyc02g081085.1 Solanum lycopersicum HOM05D008041 ORTHO05D000385 1.3e-11 73.9 140 30.0
AUR62013324 Chenopodium quinoa HOM05D010065 ORTHO05D000385 5.0e-11 72.0 123 29.3
AUR62043459 Chenopodium quinoa HOM05D004615 ORTHO05D000385 5.0e-11 72.0 145 31.0
AUR62042816 Chenopodium quinoa HOM05D010065 ORTHO05D000385 6.6e-11 71.6 123 29.3
Psat5g270240 Pisum sativum HOM05D008859 ORTHO05D007166 6.6e-11 71.6 172 27.9
Sc07g0005790 Simmondsia chinensis HOM05D010414 ORTHO05D000385 6.6e-11 71.6 78 46.2
EL10Ac1g02164 Beta vulgaris HOM05D004615 ORTHO05D000385 8.6e-11 71.2 168 25.6
AUR62043465 Chenopodium quinoa HOM05D004615 ORTHO05D000385 1.1e-10 70.9 147 30.6
AUR62041916 Chenopodium quinoa HOM05D004615 ORTHO05D000385 1.5e-10 70.5 179 27.9
EL10Ac3g06972 Beta vulgaris HOM05D010065 ORTHO05D000385 1.9e-10 70.1 146 27.4
Sopen03g010950 Solanum pennellii HOM05D008041 ORTHO05D000385 3.3e-10 69.3 176 25.6
Solyc08g016677.1 Solanum lycopersicum HOM05D008041 ORTHO05D000385 4.3e-10 68.9 125 29.6
EL10Ac2g02989 Beta vulgaris HOM05D004615 ORTHO05D000385 5.6e-10 68.6 63 41.3
EL10Ac6g14681 Beta vulgaris HOM05D010065 ORTHO05D000385 5.6e-10 68.6 146 27.4
EL10Ac7g17625 Beta vulgaris HOM05D004615 ORTHO05D000385 5.6e-10 68.6 63 41.3
EL10Ac9g22619 Beta vulgaris HOM05D004615 ORTHO05D000385 5.6e-10 68.6 63 41.3
AUR62041528 Chenopodium quinoa HOM05D010065 ORTHO05D000385 5.6e-10 68.6 127 27.6
AUR62041652 Chenopodium quinoa HOM05D010065 ORTHO05D000385 5.6e-10 68.6 123 28.5
Solyc10g061845.1 Solanum lycopersicum HOM05D008041 ORTHO05D000385 5.6e-10 68.6 176 25.6
Hund15079 Selenicereus undatus HOM05D020107 ORTHO05D000385 9.5e-10 67.8 137 29.9
Sopen01g007850 Solanum pennellii HOM05D008041 ORTHO05D000385 9.5e-10 67.8 172 25.0
Sopen03g012270 Solanum pennellii HOM05D008041 ORTHO05D000385 9.5e-10 67.8 172 25.0
Sopen04g017170 Solanum pennellii HOM05D008041 ORTHO05D000385 9.5e-10 67.8 172 25.0
Sopen07g025660 Solanum pennellii HOM05D008041 ORTHO05D000385 9.5e-10 67.8 172 25.0
Sopen12g016000 Solanum pennellii HOM05D008041 ORTHO05D000385 9.5e-10 67.8 172 25.0
EL10Ac1g01142 Beta vulgaris HOM05D004615 ORTHO05D000385 1.2e-09 67.4 65 41.5
Medtr5g061300 Medicago truncatula HOM05D004615 ORTHO05D000385 1.6e-09 67.0 140 26.4
Hund10043 Selenicereus undatus HOM05D009682 ORTHO05D000385 2.1e-09 66.6 110 30.9
Sopen09g024560 Solanum pennellii HOM05D000107 ORTHO05D000062 2.8e-09 66.2 110 31.8
EL10Ac5g11873 Beta vulgaris HOM05D004615 ORTHO05D000385 3.6e-09 65.9 77 35.1
Atru.chr1.3691 Acer truncatum HOM05D005012 ORTHO05D005886 4.7e-09 65.5 106 30.2
Sopen09g017170 Solanum pennellii HOM05D008041 ORTHO05D000385 4.7e-09 65.5 172 24.4
PGSC0003DMG400006058 Solanum tuberosum HOM05D008041 ORTHO05D000385 6.2e-09 65.1 66 48.5
EL10Ac1g01843 Beta vulgaris HOM05D009343 ORTHO05D011970 8.0e-09 64.7 79 35.4
EL10Ac3g06149 Beta vulgaris HOM05D004615 ORTHO05D000385 1.1e-08 64.3 189 24.3
EL10Ac9g21235 Beta vulgaris HOM05D004615 ORTHO05D000385 1.1e-08 64.3 189 24.3
EL10Ac2g03424 Beta vulgaris HOM05D004615 ORTHO05D000385 1.4e-08 63.9 189 24.3
Sopen10g014360 Solanum pennellii HOM05D007930 ORTHO05D007166 1.4e-08 63.9 147 27.2
Sc07g0005310 Simmondsia chinensis HOM05D010414 ORTHO05D000385 2.3e-08 63.2 35 80.0
Lj1g0024910 Lotus japonicus HOM05D004615 ORTHO05D007166 4.0e-08 62.4 69 40.6
Sopen01g006470 Solanum pennellii HOM05D008041 ORTHO05D000385 6.8e-08 61.6 173 23.7
AUR62035483 Chenopodium quinoa HOM05D004615 ORTHO05D000385 8.9e-08 61.2 109 29.4
MBI15_g13426_MAGBIO Magnolia biondii HOM05D001309 ORTHO05D000385 8.9e-08 61.2 150 26.0
Sopen01g007980 Solanum pennellii HOM05D007930 ORTHO05D007166 8.9e-08 61.2 147 28.6
TPR.G13785 Trifolium pratense HOM05D004615 ORTHO05D000385 8.9e-08 61.2 77 36.4
EL10Ac1g01725 Beta vulgaris HOM05D004615 ORTHO05D000385 1.2e-07 60.8 124 29.8
Lj3g0027022 Lotus japonicus HOM05D004615 ORTHO05D000385 1.2e-07 60.8 185 22.7
Hund13368 Selenicereus undatus HOM05D009682 ORTHO05D000385 1.5e-07 60.5 216 25.5
Nitab4.5_0000188g0020 Nicotiana tabacum HOM05D001309 ORTHO05D000385 2.0e-07 60.1 105 27.6
arahy.Tifrunner.gnm1.ann1.U4Z5MQ Arachis hypogaea HOM05D010482 ORTHO05D000385 2.6e-07 59.7 113 27.4
Nitab4.5_0004695g0040 Nicotiana tabacum HOM05D001309 ORTHO05D000385 2.6e-07 59.7 104 27.9
Psat5g236880 Pisum sativum HOM05D008859 ORTHO05D007166 2.6e-07 59.7 77 36.4
Psat7g204000 Pisum sativum HOM05D008859 ORTHO05D007166 2.6e-07 59.7 77 36.4
AUR62030190 Chenopodium quinoa HOM05D004615 ORTHO05D000385 3.4e-07 59.3 140 30.0
PGSC0003DMG400038814 Solanum tuberosum HOM05D004615 ORTHO05D000385 3.4e-07 59.3 69 33.3
PGSC0003DMG400046569 Solanum tuberosum HOM05D004615 ORTHO05D019313 3.4e-07 59.3 94 33.0
Nitab4.5_0001346g0040 Nicotiana tabacum HOM05D001309 ORTHO05D000385 4.4e-07 58.9 104 26.9
AUR62042260 Chenopodium quinoa HOM05D004615 ORTHO05D000385 5.8e-07 58.5 62 37.1
EL10Ac1g02022 Beta vulgaris HOM05D004615 ORTHO05D000385 7.5e-07 58.2 70 32.9
Solyc06g036805.1 Solanum lycopersicum HOM05D008041 ORTHO05D000385 7.5e-07 58.2 61 37.7
Solyc09g014641.1 Solanum lycopersicum HOM05D008041 ORTHO05D000385 7.5e-07 58.2 61 37.7
Sopen02g004250 Solanum pennellii HOM05D000004 ORTHO05D000385 7.5e-07 58.2 61 37.7
Sopen12g014810 Solanum pennellii HOM05D008041 ORTHO05D000385 7.5e-07 58.2 61 37.7
Nitab4.5_0010582g0050 Nicotiana tabacum HOM05D001309 ORTHO05D000385 9.8e-07 57.8 69 31.9
Sopen07g020910 Solanum pennellii HOM05D008041 ORTHO05D000385 9.8e-07 57.8 212 22.6
DCAR_010153 Daucus carota HOM05D024847 ORTHO05D000385 1.3e-06 57.4 85 36.5
EL10Ac3g06255 Beta vulgaris HOM05D004615 ORTHO05D000385 1.7e-06 57.0 67 35.8
AUR62007768 Chenopodium quinoa HOM05D004615 ORTHO05D000385 1.7e-06 57.0 68 33.8
DCAR_032376 Daucus carota HOM05D013476 ORTHO05D012368 1.7e-06 57.0 70 32.9
Nitab4.5_0003520g0010 Nicotiana tabacum HOM05D001309 ORTHO05D000385 1.7e-06 57.0 105 25.7
Nitab4.5_0003970g0030 Nicotiana tabacum HOM05D001309 ORTHO05D000385 1.7e-06 57.0 69 31.9
PGSC0003DMG400043538 Solanum tuberosum HOM05D007930 ORTHO05D007166 1.7e-06 57.0 136 25.0
DCAR_022238 Daucus carota HOM05D004615 ORTHO05D000385 2.2e-06 56.6 55 40.0
DCAR_029785 Daucus carota HOM05D004615 ORTHO05D000385 2.2e-06 56.6 55 40.0
DCAR_006099 Daucus carota HOM05D022224 ORTHO05D000385 2.9e-06 56.2 80 35.0
Nitab4.5_0000781g0070 Nicotiana tabacum HOM05D001309 ORTHO05D000385 2.9e-06 56.2 104 26.9
Sopen12g015810 Solanum pennellii HOM05D007930 ORTHO05D007166 2.9e-06 56.2 119 26.1
EL10Ac8g18984 Beta vulgaris HOM05D010065 ORTHO05D000385 3.7e-06 55.8 58 36.2
Nitab4.5_0008635g0020 Nicotiana tabacum HOM05D001309 ORTHO05D000385 3.7e-06 55.8 105 25.7
Solyc10g018713.1 Solanum lycopersicum HOM05D008041 ORTHO05D000385 3.7e-06 55.8 57 36.8
DCAR_032097 Daucus carota HOM05D004615 ORTHO05D000385 6.4e-06 55.1 69 34.8
Nitab4.5_0005139g0010 Nicotiana tabacum HOM05D001309 ORTHO05D000385 6.4e-06 55.1 105 24.8
Phvul.L001738 Phaseolus vulgaris HOM05D008859 ORTHO05D007166 6.4e-06 55.1 67 35.8
PGR044G2648 Punica granatum HOM05D000876 ORTHO05D000285 6.4e-06 55.1 139 23.0
Sc03g0005700 Simmondsia chinensis HOM05D014970 ORTHO05D019369 6.4e-06 55.1 123 27.6
PGSC0003DMG400046273 Solanum tuberosum HOM05D008041 ORTHO05D000385 6.4e-06 55.1 105 26.7
SGA_v2.0_scaffold107G30768 Striga asiatica HOM05D004615 ORTHO05D000385 6.4e-06 55.1 65 30.8
MBI09_g33431_MAGBIO Magnolia biondii HOM05D001309 ORTHO05D000385 8.3e-06 54.7 110 27.3
Sopen10g012240 Solanum pennellii HOM05D000107 ORTHO05D000385 8.3e-06 54.7 61 36.1


User provided reference genes

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