Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc11g0005890 Simmondsia chinensis HOM05D007596 ORTHO05D009672 2.1e-47 191.8 85 100.0
Sc11g0005570 Simmondsia chinensis HOM05D007596 ORTHO05D009672 1.1e-43 179.5 87 93.1
Sc04g0001910 Simmondsia chinensis HOM05D007596 ORTHO05D009672 1.1e-27 126.3 60 93.3
Lsat_1_v5_gn_4_73100 Lactuca sativa HOM05D007596 ORTHO05D009672 4.0e-22 107.8 58 75.9
SGA_v2.0_scaffold90G27960 Striga asiatica HOM05D007596 ORTHO05D009672 4.0e-22 107.8 59 76.3
SGA_v2.0_scaffold90G27962 Striga asiatica HOM05D007596 ORTHO05D009672 4.0e-22 107.8 59 76.3
Nn4g22825 Nelumbo nucifera HOM05D007596 ORTHO05D009672 6.9e-22 107.1 59 71.2
ECA232G2922 Erigeron canadensis HOM05D007596 ORTHO05D009672 9.0e-22 106.7 54 79.6
Peaxi162Scf00689g00036 Petunia axillaris HOM05D007596 ORTHO05D009672 1.2e-21 106.3 58 75.9
Hund02735 Selenicereus undatus HOM05D007596 ORTHO05D009672 1.2e-21 106.3 64 68.8
Solyc06g071380.3 Solanum lycopersicum HOM05D007596 ORTHO05D009672 1.2e-21 106.3 58 75.9
Sopen06g027660 Solanum pennellii HOM05D007596 ORTHO05D009672 1.2e-21 106.3 58 75.9
TAR374G1438 Trochodendron aralioides HOM05D007596 ORTHO05D009672 1.2e-21 106.3 59 72.9
EL10Ac5g10784 Beta vulgaris HOM05D007596 ORTHO05D009672 2.0e-21 105.5 60 71.7
Dinv20674 Davidia involucrata HOM05D007596 ORTHO05D009672 2.0e-21 105.5 59 69.5
Nitab4.5_0007803g0020 Nicotiana tabacum HOM05D007596 ORTHO05D009672 2.6e-21 105.1 58 74.1
PGSC0003DMG400027097 Solanum tuberosum HOM05D007596 ORTHO05D009672 2.6e-21 105.1 58 74.1
Nitab4.5_0000003g0490 Nicotiana tabacum HOM05D007596 ORTHO05D009672 3.4e-21 104.8 58 72.4
MSTRG.11436 Avicennia marina HOM05D007596 ORTHO05D009672 4.5e-21 104.4 59 74.6
Cc04_g12800 Coffea canephora HOM05D007596 ORTHO05D009672 4.5e-21 104.4 59 69.5
Oeu041561.1 Olea europaea HOM05D007596 ORTHO05D009672 5.8e-21 104.0 59 71.2
HanXRQChr16g0503661 Helianthus annuus HOM05D007596 ORTHO05D009672 7.6e-21 103.6 54 79.6
ATR0691G114 Amborella trichopoda HOM05D007596 ORTHO05D009672 1.0e-20 103.2 59 69.5
MBI15_g31109_MAGBIO Magnolia biondii HOM05D007596 ORTHO05D009672 1.3e-20 102.8 58 72.4
SalBow5G3112 Salvia bowleyana HOM05D007596 ORTHO05D009672 2.2e-20 102.1 59 72.9
Migut.I00032 Erythranthe guttata HOM05D007596 ORTHO05D009672 3.8e-20 101.3 59 71.2
Lj9A451T97 Lonicera japonica HOM05D007596 ORTHO05D009672 4.9e-20 100.9 58 69.0
Aqoxy3G00967 Aquilegia oxysepala HOM05D007596 ORTHO05D009672 1.1e-19 99.8 59 71.2
DCAR_026124 Daucus carota HOM05D007596 ORTHO05D009672 1.9e-19 99.0 58 70.7
CSS0015692 Camellia sinensis var. sinensis HOM05D007596 ORTHO05D009672 2.5e-19 98.6 59 66.1
GSVIVG01007788001 Vitis vinifera HOM05D007596 ORTHO05D009672 2.5e-19 98.6 58 70.7
PSO832G1789 Papaver somniferum HOM05D007596 ORTHO05D009672 4.2e-19 97.8 58 67.2
Rhsim12G0163300 Rhododendron simsii HOM05D007596 ORTHO05D009672 7.1e-19 97.1 59 64.4
Hma1.2p1_0701F.1_g205970 Hydrangea macrophylla HOM05D007596 ORTHO05D009672 9.3e-19 96.7 59 67.8
PSO063G6591 Papaver somniferum HOM05D007596 ORTHO05D009672 1.2e-18 96.3 58 67.2
Ca_21906_v3 Cicer arietinum L. HOM05D007596 ORTHO05D009672 1.6e-18 95.9 82 48.8
Ca_21924_v3 Cicer arietinum L. HOM05D007596 ORTHO05D009672 1.6e-18 95.9 82 48.8
Ah.13g077910 Amaranthus hybridus HOM05D007596 ORTHO05D004562 2.1e-18 95.5 52 73.1
Prupe.5G176300 Prunus persica HOM05D007596 ORTHO05D009672 2.1e-18 95.5 58 69.0
Haze_07490 Corylus avellana HOM05D007596 ORTHO05D009672 2.7e-18 95.1 64 60.9
TWI15G1048 Tripterygium wilfordii HOM05D007596 ORTHO05D009672 2.7e-18 95.1 54 72.2
HPP92_019181 Vanilla planifolia HOM05D007596 ORTHO05D009672 2.7e-18 95.1 53 73.6
CANSAT80G2510 Cannabis sativa HOM05D007596 ORTHO05D009672 3.5e-18 94.7 58 65.5
Psat4g056920 Pisum sativum HOM05D007596 ORTHO05D009672 7.9e-18 93.6 53 71.7
vmacro16599 Vaccinium macrocarpon HOM05D007596 ORTHO05D009672 1.0e-17 93.2 59 64.4
Atru.chr9.2439 Acer truncatum HOM05D007596 ORTHO05D009672 1.8e-17 92.4 53 69.8
CiPaw.11G029100 Carya illinoinensis HOM05D007596 ORTHO05D009672 2.3e-17 92.0 59 62.7
Eucgr.K02859 Eucalyptus grandis HOM05D007596 ORTHO05D009672 2.3e-17 92.0 54 70.4
SMO347G0014 Selaginella moellendorffii HOM05D007596 ORTHO05D009672 2.3e-17 92.0 59 59.3
unitig_26.g8797 Utricularia gibba HOM05D007596 ORTHO05D009672 2.3e-17 92.0 50 74.0
QL10p012241 Quercus lobata HOM05D007596 ORTHO05D009672 3.9e-17 91.3 58 60.3
Lalb_Chr13g0297881 Lupinus albus HOM05D007596 ORTHO05D009672 6.7e-17 90.5 53 66.0
RcHm_v2.0_Chr7g0193891 Rosa chinensis HOM05D007596 ORTHO05D009672 6.7e-17 90.5 53 67.9
MD06G1177600 Malus domestica HOM05D007596 ORTHO05D009672 8.7e-17 90.1 58 63.8
COL.COLO4_34057 Corchorus olitorius HOM05D007596 ORTHO05D009672 1.1e-16 89.7 54 64.8
Sed0010804 Sechium edule HOM05D007596 ORTHO05D009672 1.1e-16 89.7 53 66.0
Duzib205G0154 Durio zibethinus HOM05D007596 ORTHO05D009672 1.5e-16 89.4 58 62.1
FvH4_5g05110 Fragaria vesca HOM05D007596 ORTHO05D009672 1.5e-16 89.4 53 67.9
FAN04G0664 Fragaria x ananassa HOM05D007596 ORTHO05D009672 1.5e-16 89.4 53 67.9
FAN08G2413 Fragaria x ananassa HOM05D007596 ORTHO05D009672 1.5e-16 89.4 53 67.9
FAN13G0067 Fragaria x ananassa HOM05D007596 ORTHO05D009672 1.5e-16 89.4 53 67.9
FAN18G0106 Fragaria x ananassa HOM05D007596 ORTHO05D009672 1.5e-16 89.4 53 67.9
Ciclev10021737m.g Citrus clementina HOM05D007596 ORTHO05D009672 1.9e-16 89.0 53 67.9
Glyma.05G036200 Glycine max HOM05D007596 ORTHO05D009672 1.9e-16 89.0 53 67.9
Gorai.006G187000 Gossypium raimondii HOM05D007596 ORTHO05D009672 1.9e-16 89.0 53 67.9
Medtr4g106630 Medicago truncatula HOM05D007596 ORTHO05D009672 1.9e-16 89.0 53 67.9
CsaV3_1G008350 Cucumis sativus L. HOM05D007596 ORTHO05D009672 2.5e-16 88.6 53 66.0
VMungo1215G2651 Vigna mungo HOM05D007596 ORTHO05D009672 2.5e-16 88.6 82 45.1
Thecc.03G008700 Theobroma cacao HOM05D007596 ORTHO05D009672 3.3e-16 88.2 58 60.3
TPR.G37562 Trifolium pratense HOM05D007596 ORTHO05D009672 3.3e-16 88.2 53 67.9
ClCG01G013000 Citrullus lanatus HOM05D007596 ORTHO05D009672 4.3e-16 87.8 53 62.3
Gohir.A09G169500 Gossypium hirsutum HOM05D007596 ORTHO05D009672 5.7e-16 87.4 53 66.0
Gohir.D09G165200 Gossypium hirsutum HOM05D007596 ORTHO05D009672 7.4e-16 87.0 53 66.0
Manes.06G103100 Manihot esculenta HOM05D007596 ORTHO05D009672 7.4e-16 87.0 51 68.6
arahy.Tifrunner.gnm1.ann1.3E9X4W Arachis hypogaea HOM05D007596 ORTHO05D009672 9.7e-16 86.7 53 67.9
Sabra12G0056400 Salix brachista HOM05D007596 ORTHO05D009672 1.3e-15 86.3 53 66.0
Lj4g0018893 Lotus japonicus HOM05D007596 ORTHO05D009672 1.6e-15 85.9 53 64.2
COL.COLO4_33480 Corchorus olitorius HOM05D007596 ORTHO05D009672 2.2e-15 85.5 54 63.0
arahy.Tifrunner.gnm1.ann1.8F9XT7 Arachis hypogaea HOM05D007596 ORTHO05D009672 4.8e-15 84.3 53 66.0
Potri.012G078600 Populus trichocarpa HOM05D007596 ORTHO05D009672 4.8e-15 84.3 53 64.2
PGR044G0668 Punica granatum HOM05D007596 ORTHO05D009672 6.3e-15 84.0 59 61.0
Phvul.003G198900 Phaseolus vulgaris HOM05D007596 ORTHO05D009672 8.2e-15 83.6 53 62.3
Psat4g101560 Pisum sativum HOM05D007596 ORTHO05D009672 1.4e-14 82.8 53 64.2
Os04g0465800 Oryza sativa ssp. japonica HOM05D007596 ORTHO05D009672 5.9e-13 77.4 54 61.1
Zm00001eb080350 Zea mays HOM05D007596 ORTHO05D009672 1.3e-12 76.3 55 61.8
FvH4_5g16630 Fragaria vesca HOM05D007596 ORTHO05D009672 4.6e-10 67.8 51 51.0
FAN18G2080 Fragaria x ananassa HOM05D007596 ORTHO05D009672 4.6e-10 67.8 51 51.0
FAN18G0038 Fragaria x ananassa HOM05D007596 ORTHO05D009672 7.9e-10 67.0 45 60.0
Cpa.g.c40406 Carica papaya HOM05D007596 ORTHO05D009672 1.1e-08 63.2 42 59.5
SGA_v2.0_scaffold90G27974 Striga asiatica HOM05D001155 ORTHO05D001080 1.5e-08 62.8 56 51.8


User provided reference genes

Program Settings