Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc11g0005730 Simmondsia chinensis HOM05D006817 ORTHO05D008603 5.8e-262 907.1 497 100.0
EL10Ac2g04256 Beta vulgaris HOM05D006817 ORTHO05D008603 6.6e-189 664.5 493 74.2
GSVIVG01032704001 Vitis vinifera HOM05D006817 ORTHO05D008603 2.9e-184 649.0 494 71.3
Ah.16g104230 Amaranthus hybridus HOM05D006817 ORTHO05D008603 1.8e-183 646.4 511 70.5
TAR623G0065 Trochodendron aralioides HOM05D006817 ORTHO05D008603 5.4e-183 644.8 489 71.4
CSS0030257 Camellia sinensis var. sinensis HOM05D006817 ORTHO05D008603 1.6e-179 633.3 495 68.7
Actinidia00992 Actinidia chinensis HOM05D006817 ORTHO05D008603 6.2e-179 631.3 494 68.6
TWI09G1614 Tripterygium wilfordii HOM05D006817 ORTHO05D008603 6.8e-178 627.9 490 69.0
Nn2g10348 Nelumbo nucifera HOM05D006817 ORTHO05D008603 2.6e-177 625.9 494 69.0
Thecc.10G176900 Theobroma cacao HOM05D006817 ORTHO05D008603 4.4e-177 625.2 490 69.6
Ciclev10031264m.g Citrus clementina HOM05D006817 ORTHO05D008603 8.3e-176 620.9 496 68.8
Atru.chr12.157 Acer truncatum HOM05D006817 ORTHO05D008603 3.2e-175 619.0 491 69.0
Potri.019G048700 Populus trichocarpa HOM05D006817 ORTHO05D008603 7.0e-175 617.8 496 68.1
Gohir.A10G180300 Gossypium hirsutum HOM05D006817 ORTHO05D008603 7.8e-174 614.4 491 68.4
PGR044G0301 Punica granatum HOM05D006817 ORTHO05D008603 1.0e-173 614.0 490 69.2
Eucgr.J00131 Eucalyptus grandis HOM05D006817 ORTHO05D008603 3.9e-173 612.1 489 69.3
Gorai.011G210100 Gossypium raimondii HOM05D006817 ORTHO05D008603 1.5e-172 610.1 491 68.4
Rhsim09G0184300 Rhododendron simsii HOM05D006817 ORTHO05D008603 1.6e-171 606.7 501 66.9
PSO170G5674 Papaver somniferum HOM05D006817 ORTHO05D008603 2.8e-171 605.9 494 68.0
Sopen06g015650 Solanum pennellii HOM05D006817 ORTHO05D008603 3.6e-171 605.5 491 66.4
CAN.G169.4 Capsicum annuum HOM05D006817 ORTHO05D008603 1.4e-170 603.6 489 66.1
Aqoxy4G02362 Aquilegia oxysepala HOM05D006817 ORTHO05D008603 1.8e-170 603.2 487 68.0
Migut.F00593 Erythranthe guttata HOM05D006817 ORTHO05D008603 1.8e-170 603.2 491 66.2
Prupe.2G261900 Prunus persica HOM05D006817 ORTHO05D008603 3.1e-170 602.4 492 66.9
Solyc06g050210.3 Solanum lycopersicum HOM05D006817 ORTHO05D008603 3.1e-170 602.4 494 66.4
Peaxi162Scf00739g00017 Petunia axillaris HOM05D006817 ORTHO05D008603 5.2e-170 601.7 507 64.3
arahy.Tifrunner.gnm1.ann1.6QBV89 Arachis hypogaea HOM05D006817 ORTHO05D008603 2.6e-169 599.4 490 67.1
arahy.Tifrunner.gnm1.ann1.6ZT9VY Arachis hypogaea HOM05D006817 ORTHO05D008603 2.6e-169 599.4 493 67.3
COL.COLO4_10038 Corchorus olitorius HOM05D006817 ORTHO05D008603 4.4e-169 598.6 477 70.0
Nitab4.5_0011715g0010 Nicotiana tabacum HOM05D006817 ORTHO05D008603 8.3e-168 594.3 486 64.8
Cc02_g05530 Coffea canephora HOM05D006817 ORTHO05D008603 2.4e-167 592.8 491 67.2
CsaV3_5G010750 Cucumis sativus L. HOM05D006817 ORTHO05D008603 1.2e-166 590.5 491 65.8
ClCG07G004850 Citrullus lanatus HOM05D006817 ORTHO05D008603 1.6e-166 590.1 491 66.2
MSTRG.27274 Avicennia marina HOM05D006817 ORTHO05D008603 6.0e-166 588.2 485 66.2
Psat6g035880 Pisum sativum HOM05D006817 ORTHO05D008603 7.8e-166 587.8 495 65.9
THA.LOC104816518 Tarenaya hassleriana HOM05D006817 ORTHO05D008603 7.8e-166 587.8 489 65.2
Phvul.001G074700 Phaseolus vulgaris HOM05D006817 ORTHO05D008603 1.0e-165 587.4 492 65.2
MELO3C020113.2 Cucumis melo HOM05D006817 ORTHO05D008603 1.3e-165 587.0 494 65.4
Glyma.19G067100 Glycine max HOM05D006817 ORTHO05D008603 1.7e-165 586.6 491 66.4
TPR.G24539 Trifolium pratense HOM05D006817 ORTHO05D008603 2.3e-165 586.3 491 65.6
Gohir.D10G187300 Gossypium hirsutum HOM05D006817 ORTHO05D008603 3.0e-165 585.9 491 66.2
Lj5g0023407 Lotus japonicus HOM05D006817 ORTHO05D008603 3.9e-165 585.5 491 64.8
Thhalv10013352m.g Eutrema salsugineum HOM05D006817 ORTHO05D008603 6.6e-165 584.7 489 64.8
MD01G1164100 Malus domestica HOM05D006817 ORTHO05D008603 1.1e-164 583.9 490 64.9
vmacro09974 Vaccinium macrocarpon HOM05D006817 ORTHO05D008603 1.9e-164 583.2 504 65.3
Oeu036532.1 Olea europaea HOM05D006817 ORTHO05D008603 4.3e-164 582.0 491 65.8
Sed0020006 Sechium edule HOM05D006817 ORTHO05D008603 9.5e-164 580.9 490 65.5
Sp6g37510 Schrenkiella parvula HOM05D006817 ORTHO05D008603 1.2e-163 580.5 499 63.5
Cpa.g.sc19.86 Carica papaya HOM05D006817 ORTHO05D008603 4.7e-163 578.6 493 63.7
Medtr1g007630 Medicago truncatula HOM05D006817 ORTHO05D008603 1.4e-162 577.0 492 65.4
MBI15_g27349_MAGBIO Magnolia biondii HOM05D006817 ORTHO05D008603 9.9e-161 570.9 560 60.2
ATR0681G057 Amborella trichopoda HOM05D006817 ORTHO05D008603 2.2e-160 569.7 492 64.6
A10p30880 Brassica napus HOM05D006817 ORTHO05D008603 2.2e-160 569.7 498 63.5
C09p71390 Brassica napus HOM05D006817 ORTHO05D008603 1.1e-159 567.4 492 63.6
BcaC06g32240 Brassica carinata HOM05D006817 ORTHO05D008603 1.9e-159 566.6 492 63.6
BraA10t45133Z Brassica rapa HOM05D006817 ORTHO05D008603 7.1e-159 564.7 498 63.5
CDE04G2280 Ceratophyllum demersum HOM05D006817 ORTHO05D008603 1.2e-158 563.9 495 63.4
Lalb_Chr22g0360921 Lupinus albus HOM05D006817 ORTHO05D008603 1.2e-158 563.9 491 63.1
ECA232G4264 Erigeron canadensis HOM05D006817 ORTHO05D008603 1.6e-158 563.5 497 61.8
PSO017G6024 Papaver somniferum HOM05D006817 ORTHO05D008603 1.6e-158 563.5 459 68.8
AUR62003430 Chenopodium quinoa HOM05D006817 ORTHO05D008603 2.7e-158 562.8 513 65.7
BolC9t59902H Brassica oleracea HOM05D006817 ORTHO05D008603 4.6e-158 562.0 494 62.6
Lsat_1_v5_gn_9_59361 Lactuca sativa HOM05D006817 ORTHO05D008603 1.7e-157 560.1 494 62.8
HPP92_019064 Vanilla planifolia HOM05D006817 ORTHO05D008603 2.3e-157 559.7 486 63.4
Dinv21831 Davidia involucrata HOM05D004766 ORTHO05D006159 8.6e-157 557.8 490 65.5
AUR62012358 Chenopodium quinoa HOM05D006817 ORTHO05D008603 2.1e-155 553.1 469 69.3
Cfa001223 Carpinus fangiana HOM05D006817 ORTHO05D008603 4.7e-155 552.0 435 70.8
Manes.10G004900 Manihot esculenta HOM05D006817 ORTHO05D008603 1.4e-154 550.4 493 64.1
HanXRQChr15g0493791 Helianthus annuus HOM05D006817 ORTHO05D008603 6.0e-150 535.0 474 63.1
Os12g0112300 Oryza sativa ssp. japonica HOM05D006817 ORTHO05D008603 1.3e-149 533.9 494 60.5
DCAR_014588 Daucus carota HOM05D006817 ORTHO05D008603 3.9e-149 532.3 492 60.8
QL08p064576 Quercus lobata HOM05D006817 ORTHO05D008603 1.5e-148 530.4 454 66.3
FAN03G2834 Fragaria x ananassa HOM05D006817 ORTHO05D008603 1.6e-147 526.9 538 58.4
Zm00001eb406320 Zea mays HOM05D006817 ORTHO05D008603 2.1e-147 526.6 485 59.8
Haze_17339 Corylus avellana HOM05D006817 ORTHO05D008603 1.8e-146 523.5 471 64.1
HanXRQChr08g0222561 Helianthus annuus HOM05D006817 ORTHO05D008603 4.0e-146 522.3 510 59.0
FAN10G2384 Fragaria x ananassa HOM05D006817 ORTHO05D008603 3.4e-145 519.2 448 66.5
FAN01G1353 Fragaria x ananassa HOM05D006817 ORTHO05D008603 9.9e-145 517.7 453 65.8
Lj8A57G58 Lonicera japonica HOM05D006817 ORTHO05D008603 6.2e-139 498.4 404 69.3
CANSAT56G1261 Cannabis sativa HOM05D006817 ORTHO05D008603 1.1e-135 487.6 485 58.6
CiPaw.02G198400 Carya illinoinensis HOM05D006817 ORTHO05D008603 2.7e-134 483.0 407 67.1
Aa31LG11G6330 Aethionema arabicum HOM05D006817 ORTHO05D008603 2.3e-133 479.9 486 57.6
FvH4_7g25670 Fragaria vesca HOM05D006817 ORTHO05D008603 1.6e-131 473.8 429 62.0
SGA_v2.0_scaffold44G16643 Striga asiatica HOM05D006817 ORTHO05D008603 6.2e-131 471.9 498 56.0
Sabra19G0058300 Salix brachista HOM05D000055 ORTHO05D000057 4.2e-127 459.1 464 58.2
CARHR207930 Cardamine hirsuta HOM05D006817 ORTHO05D008603 1.6e-115 420.6 369 62.1
MD07G1231900 Malus domestica HOM05D006817 ORTHO05D008603 2.9e-112 409.8 361 64.3
AUR62031486 Chenopodium quinoa HOM05D006817 ORTHO05D008603 6.1e-110 402.1 493 53.8
AT5G05310 Arabidopsis thaliana HOM05D006817 ORTHO05D008603 8.8e-109 398.3 362 62.2
Pp3c22_2490 Physcomitrium patens HOM05D006817 ORTHO05D008603 1.2e-92 344.7 492 45.3
Ca_12776_v3 Cicer arietinum L. HOM05D006817 ORTHO05D008603 4.7e-86 322.8 298 62.8
RcHm_v2.0_Chr1g0371891 Rosa chinensis HOM05D006817 ORTHO05D008603 1.8e-85 320.9 242 71.9
Carub.0006s0424 Capsella rubella HOM05D006817 ORTHO05D008603 5.4e-82 309.3 279 60.6
unitig_46.g18743 Utricularia gibba HOM05D006817 ORTHO05D008603 1.7e-80 304.3 361 49.9
VMungo0647G0362 Vigna mungo HOM05D006817 ORTHO05D008603 1.5e-68 264.6 239 62.3
Nitab4.5_0000109g0530 Nicotiana tabacum HOM05D006817 ORTHO05D008603 2.2e-67 260.8 233 59.2
MD05G1328700 Malus domestica HOM05D006817 ORTHO05D008603 3.0e-64 250.4 247 60.3
SEGI_05100 Sequoiadendron giganteum HOM05D006817 ORTHO05D008603 7.3e-63 245.7 213 59.2
RcHm_v2.0_Chr1g0371881 Rosa chinensis HOM05D006817 ORTHO05D008603 2.3e-56 224.2 161 69.6
VMungo0647G0650 Vigna mungo HOM05D006817 ORTHO05D008603 5.6e-55 219.5 203 57.6
MSTRG.24128 Avicennia marina HOM05D006817 ORTHO05D008603 3.7e-51 206.8 143 71.3
QL10p038395 Quercus lobata HOM05D006817 ORTHO05D008603 3.6e-46 190.3 155 67.1
MD07G1231800 Malus domestica HOM05D006817 ORTHO05D008603 2.0e-44 184.5 146 63.0
Oeu020109.1 Olea europaea HOM05D006817 ORTHO05D008603 1.9e-39 167.9 131 63.4
QL05p063879 Quercus lobata HOM05D006817 ORTHO05D008603 1.6e-33 148.3 127 64.6
Cre08.g361000 Chlamydomonas reinhardtii HOM05D006817 ORTHO05D008603 2.7e-33 147.5 497 29.2
SEGI_41528 Sequoiadendron giganteum HOM05D006817 ORTHO05D008603 7.3e-31 139.4 159 53.5
QL03p030054 Quercus lobata HOM05D006817 ORTHO05D008603 2.0e-28 131.3 87 83.9
QL06p040335 Quercus lobata HOM05D006817 ORTHO05D008603 9.9e-28 129.0 87 82.8
FvH4_7g25690 Fragaria vesca HOM05D006817 ORTHO05D008603 1.4e-26 125.2 87 74.7
QL09p047975 Quercus lobata HOM05D000176 ORTHO05D000106 2.1e-25 121.3 80 82.5
Hund15836 Selenicereus undatus HOM05D006817 ORTHO05D008603 4.6e-25 120.2 72 84.7
Os11g0112900 Oryza sativa ssp. japonica HOM05D006817 ORTHO05D008603 4.8e-22 110.2 99 58.6
FAN06G4794 Fragaria x ananassa HOM05D006817 ORTHO05D008603 1.4e-21 108.6 74 75.7
QL10p065865 Quercus lobata HOM05D006817 ORTHO05D008603 3.5e-17 94.0 61 82.0
QL08p064573 Quercus lobata HOM05D006817 ORTHO05D008603 1.5e-15 88.6 59 67.8
FAN06G1140 Fragaria x ananassa HOM05D006817 ORTHO05D008603 7.4e-15 86.3 59 76.3
MD17G1183400 Malus domestica HOM05D006817 ORTHO05D008603 2.4e-13 81.3 57 71.9
PGSC0003DMG400024308 Solanum tuberosum HOM05D006817 ORTHO05D008603 8.2e-06 56.2 41 58.5


User provided reference genes

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