Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc11g0005590 Simmondsia chinensis HOM05D006927 ORTHO05D009065 3.7e-182 641.3 309 100.0
Potri.013G070700 Populus trichocarpa HOM05D006927 ORTHO05D009065 1.9e-122 443.0 315 70.2
GSVIVG01019324001 Vitis vinifera HOM05D006927 ORTHO05D009065 4.3e-122 441.8 287 73.2
Dinv43961 Davidia involucrata HOM05D006927 ORTHO05D009065 9.6e-122 440.7 332 66.3
QL04p053394 Quercus lobata HOM05D006927 ORTHO05D009065 2.1e-121 439.5 298 72.1
Manes.09G133500 Manihot esculenta HOM05D006927 ORTHO05D009065 3.6e-121 438.7 300 72.0
Prupe.2G106800 Prunus persica HOM05D006927 ORTHO05D009065 2.4e-120 436.0 311 69.1
Eucgr.D01080 Eucalyptus grandis HOM05D006927 ORTHO05D009065 3.1e-120 435.6 282 72.0
Aqoxy1G00986 Aquilegia oxysepala HOM05D006927 ORTHO05D009065 5.3e-120 434.9 304 69.1
Sp6g26550 Schrenkiella parvula HOM05D006927 ORTHO05D009065 6.9e-120 434.5 317 67.2
THA.LOC104820815 Tarenaya hassleriana HOM05D006927 ORTHO05D009065 6.9e-120 434.5 286 72.4
Thecc.05G234500 Theobroma cacao HOM05D006927 ORTHO05D009065 2.0e-119 433.0 285 70.9
AL6G28760 Arabidopsis lyrata HOM05D006927 ORTHO05D009065 3.4e-119 432.2 302 68.9
Duzib177G0162 Durio zibethinus HOM05D006927 ORTHO05D009065 6.4e-118 427.9 313 65.8
Carub.0006s1591 Capsella rubella HOM05D006927 ORTHO05D009065 8.4e-118 427.6 317 66.9
TAR629G3441 Trochodendron aralioides HOM05D006927 ORTHO05D009065 1.1e-117 427.2 281 71.2
BcaC03g13532 Brassica carinata HOM05D006927 ORTHO05D009065 7.1e-117 424.5 316 65.5
FvH4_7g08340 Fragaria vesca HOM05D006927 ORTHO05D009065 7.1e-117 424.5 312 66.3
SalBow5G1207 Salvia bowleyana HOM05D006927 ORTHO05D009065 7.1e-117 424.5 288 69.4
Thhalv10014137m.g Eutrema salsugineum HOM05D006927 ORTHO05D009065 1.2e-116 423.7 318 66.4
FAN03G0521 Fragaria x ananassa HOM05D006927 ORTHO05D009065 1.6e-116 423.3 310 67.1
RcHm_v2.0_Chr1g0340711 Rosa chinensis HOM05D006927 ORTHO05D009065 1.6e-116 423.3 306 67.0
CSS0031880 Camellia sinensis var. sinensis HOM05D006927 ORTHO05D009065 2.1e-116 422.9 290 68.3
CSS0044270 Camellia sinensis var. sinensis HOM05D006927 ORTHO05D009065 2.1e-116 422.9 290 69.3
Gorai.007G250200 Gossypium raimondii HOM05D006927 ORTHO05D009065 2.1e-116 422.9 317 65.9
A02p04400 Brassica napus HOM05D006927 ORTHO05D009065 3.5e-116 422.2 317 65.6
Lj1g0006598 Lotus japonicus HOM05D006927 ORTHO05D009065 3.5e-116 422.2 311 67.2
AT5G17670 Arabidopsis thaliana HOM05D006927 ORTHO05D009065 4.6e-116 421.8 302 68.2
Ah.16g104050 Amaranthus hybridus HOM05D006927 ORTHO05D009065 6.0e-116 421.4 311 68.8
DCAR_001906 Daucus carota HOM05D006927 ORTHO05D009065 6.0e-116 421.4 285 69.1
Ciclev10032190m.g Citrus clementina HOM05D006927 ORTHO05D009065 7.9e-116 421.0 286 69.2
MD07G1081500 Malus domestica HOM05D006927 ORTHO05D009065 1.0e-115 420.6 279 70.6
Gohir.A11G224222 Gossypium hirsutum HOM05D006927 ORTHO05D009065 1.7e-115 419.9 297 67.3
Cpa.g.sc73.27 Carica papaya HOM05D006927 ORTHO05D009065 3.9e-115 418.7 312 65.4
Migut.B01420 Erythranthe guttata HOM05D006927 ORTHO05D009065 2.5e-114 416.0 300 64.7
C02p09230 Brassica napus HOM05D006927 ORTHO05D009065 3.3e-114 415.6 319 65.5
Haze_15787 Corylus avellana HOM05D006927 ORTHO05D009065 3.3e-114 415.6 314 68.5
ATR0568G108 Amborella trichopoda HOM05D006927 ORTHO05D009065 4.3e-114 415.2 283 69.6
FAN10G1940 Fragaria x ananassa HOM05D006927 ORTHO05D009065 4.3e-114 415.2 312 64.7
Atru.chr2.1634 Acer truncatum HOM05D006927 ORTHO05D009065 5.6e-114 414.8 328 61.9
MELO3C022480.2 Cucumis melo HOM05D006927 ORTHO05D009065 1.3e-113 413.7 285 68.8
HanXRQChr01g0018481 Helianthus annuus HOM05D006927 ORTHO05D009065 1.3e-113 413.7 301 65.8
Lj9A617T58 Lonicera japonica HOM05D006927 ORTHO05D009065 1.6e-113 413.3 278 69.8
CsaV3_6G006390 Cucumis sativus L. HOM05D006927 ORTHO05D009065 2.8e-113 412.5 307 65.5
Lsat_1_v5_gn_1_89341 Lactuca sativa HOM05D006927 ORTHO05D009065 2.8e-113 412.5 289 68.2
FAN06G3009 Fragaria x ananassa HOM05D006927 ORTHO05D009065 3.6e-113 412.1 330 62.7
TWI34G1327 Tripterygium wilfordii HOM05D006927 ORTHO05D009065 8.1e-113 411.0 301 66.1
Medtr3g118320 Medicago truncatula HOM05D006927 ORTHO05D009065 1.1e-112 410.6 306 67.3
Glyma.06G001500 Glycine max HOM05D006927 ORTHO05D009065 1.4e-112 410.2 305 66.9
Sed0018978 Sechium edule HOM05D006927 ORTHO05D009065 2.4e-112 409.5 310 64.2
MBI04_g06278_MAGBIO Magnolia biondii HOM05D006927 ORTHO05D009065 3.1e-112 409.1 279 68.8
Os02g0129900 Oryza sativa ssp. japonica HOM05D006927 ORTHO05D009065 3.1e-112 409.1 303 65.0
PGSC0003DMG400031110 Solanum tuberosum HOM05D006927 ORTHO05D009065 9.0e-112 407.5 290 65.2
Nitab4.5_0006785g0060 Nicotiana tabacum HOM05D006927 ORTHO05D009065 1.2e-111 407.1 297 64.6
Rhsim07G0047700 Rhododendron simsii HOM05D006927 ORTHO05D009065 1.2e-111 407.1 311 64.6
Cc02_g26470 Coffea canephora HOM05D006927 ORTHO05D009065 2.0e-111 406.4 297 65.3
PGR083G0610 Punica granatum HOM05D006927 ORTHO05D009065 4.5e-111 405.2 291 66.3
Solyc01g081480.3 Solanum lycopersicum HOM05D006927 ORTHO05D009065 9.9e-111 404.1 290 65.2
Aa31LG11G11960 Aethionema arabicum HOM05D006927 ORTHO05D009065 1.7e-110 403.3 333 61.3
CANSAT25G2771 Cannabis sativa HOM05D006927 ORTHO05D009065 1.7e-110 403.3 281 68.3
Nitab4.5_0000792g0130 Nicotiana tabacum HOM05D006927 ORTHO05D009065 1.7e-110 403.3 299 64.5
Peaxi162Scf00907g00025 Petunia axillaris HOM05D006927 ORTHO05D009065 1.7e-110 403.3 297 65.3
Sopen01g033040 Solanum pennellii HOM05D006927 ORTHO05D009065 2.2e-110 402.9 290 65.2
Phvul.002G317100 Phaseolus vulgaris HOM05D006927 ORTHO05D009065 6.4e-110 401.4 301 63.8
Zm00001eb208940 Zea mays HOM05D006927 ORTHO05D009065 1.1e-109 400.6 313 64.9
PSO675G5316 Papaver somniferum HOM05D006927 ORTHO05D009065 7.1e-109 397.9 325 61.2
TPR.G38566 Trifolium pratense HOM05D006927 ORTHO05D009065 9.3e-109 397.5 308 64.6
ECA248G1152 Erigeron canadensis HOM05D006927 ORTHO05D009065 2.7e-108 396.0 283 66.1
arahy.Tifrunner.gnm1.ann1.DTN3WJ Arachis hypogaea HOM05D006927 ORTHO05D009065 4.6e-108 395.2 290 65.5
VMungo0251G3349 Vigna mungo HOM05D006927 ORTHO05D009065 6.0e-108 394.8 310 62.9
arahy.Tifrunner.gnm1.ann1.A7PVHI Arachis hypogaea HOM05D006927 ORTHO05D009065 5.1e-107 391.7 290 65.2
CAN.G992.25 Capsicum annuum HOM05D006927 ORTHO05D009065 8.7e-107 391.0 297 63.3
Ca_15418_v3 Cicer arietinum L. HOM05D006927 ORTHO05D009065 8.7e-107 391.0 265 69.8
COL.COLO4_21417 Corchorus olitorius HOM05D006927 ORTHO05D009065 5.6e-106 388.3 278 68.0
ClCG06G000620 Citrullus lanatus HOM05D006927 ORTHO05D009065 2.1e-105 386.3 328 59.8
vmacro13598 Vaccinium macrocarpon HOM05D006927 ORTHO05D009065 1.7e-102 376.7 438 48.6
SGA_v2.0_scaffold98G29375 Striga asiatica HOM05D006927 ORTHO05D009065 4.6e-100 368.6 286 61.9
CDE02G0279 Ceratophyllum demersum HOM05D006927 ORTHO05D009065 1.3e-99 367.1 291 61.2
Lalb_Chr08g0246751 Lupinus albus HOM05D006927 ORTHO05D009065 1.4e-93 347.1 301 56.1
AagrBONN_evm.TU.Sc2ySwM_228.4179 Anthoceros agrestis HOM05D006927 ORTHO05D009065 5.5e-93 345.1 299 54.8
FAN01G0804 Fragaria x ananassa HOM05D006927 ORTHO05D009065 2.3e-91 339.7 306 58.8
MD02G1231900 Malus domestica HOM05D006927 ORTHO05D009065 9.7e-90 334.3 252 64.7
Sabra13G0061600 Salix brachista HOM05D006927 ORTHO05D009065 2.8e-89 332.8 352 52.3
Mapoly0110s0034 Marchantia polymorpha HOM05D006927 ORTHO05D009065 2.4e-88 329.7 307 53.4
Pp3c20_10810 Physcomitrium patens HOM05D006927 ORTHO05D009065 2.4e-88 329.7 297 53.2
Psat5g000960 Pisum sativum HOM05D006927 ORTHO05D009065 9.7e-82 307.8 246 64.2
SMO141G0137 Selaginella moellendorffii HOM05D006927 ORTHO05D009065 2.4e-80 303.1 277 55.2
Nn1g09344 Nelumbo nucifera HOM05D006927 ORTHO05D009065 2.0e-74 283.5 196 68.9
BolC2t06832H Brassica oleracea HOM05D006927 ORTHO05D009065 1.7e-73 280.4 194 69.6
BraA02t05404Z Brassica rapa HOM05D006927 ORTHO05D009065 3.7e-73 279.3 191 70.7
Dinv43521 Davidia involucrata HOM05D006927 ORTHO05D009065 1.8e-72 276.9 170 74.1
Oeu034881.1 Olea europaea HOM05D006927 ORTHO05D009065 5.3e-72 275.4 176 71.0
Actinidia31733 Actinidia chinensis HOM05D006927 ORTHO05D009065 1.6e-68 263.8 181 68.0
CiPaw.02G047300 Carya illinoinensis HOM05D006927 ORTHO05D009065 2.1e-68 263.5 162 75.3
Cre07.g313550 Chlamydomonas reinhardtii HOM05D006927 ORTHO05D009065 2.4e-64 250.0 284 44.0
Aqoxy116s007 Aquilegia oxysepala HOM05D006927 ORTHO05D009065 9.1e-64 248.1 270 51.5
MCO09G674 Micromonas commoda HOM05D006927 ORTHO05D009065 2.7e-63 246.5 276 44.6
HPP92_025548 Vanilla planifolia HOM05D006927 ORTHO05D009065 6.1e-60 235.3 182 60.4
PRCOL_00002784 Prasinoderma coloniale HOM05D006927 ORTHO05D009065 7.5e-58 228.4 308 41.9
CARHR195510 Cardamine hirsuta HOM05D006927 ORTHO05D009065 1.3e-57 227.6 165 66.7
Gohir.D11G237100 Gossypium hirsutum HOM05D006927 ORTHO05D009065 2.0e-47 193.7 144 66.7
unitig_26.g8847 Utricularia gibba HOM05D006927 ORTHO05D009065 8.0e-44 181.8 119 67.2
unitig_26.g8846 Utricularia gibba HOM05D006927 ORTHO05D009065 1.4e-32 144.4 97 67.0
PRCOL_00000683 Prasinoderma coloniale HOM05D006927 ORTHO05D009065 5.0e-30 136.0 298 34.6
Cre01.g025150 Chlamydomonas reinhardtii HOM05D006927 ORTHO05D044296 3.6e-28 129.8 351 29.6
Actinidia34774 Actinidia chinensis HOM05D006927 ORTHO05D009065 4.7e-28 129.4 81 67.9
Thecc.05G234900 Theobroma cacao HOM05D006927 ORTHO05D009065 5.2e-27 125.9 60 90.0
MCO02G275 Micromonas commoda HOM05D006927 ORTHO05D044296 4.4e-26 122.9 350 30.0
SEGI_38351 Sequoiadendron giganteum HOM05D006927 ORTHO05D009065 6.4e-25 119.0 81 65.4
BcaB08g36753 Brassica carinata HOM05D006927 ORTHO05D009065 1.6e-20 104.4 141 44.7
HPP92_025520 Vanilla planifolia HOM05D006927 ORTHO05D009065 6.6e-14 82.4 117 44.4
AagrBONN_evm.TU.Sc2ySwM_368.1936 Anthoceros agrestis HOM05D006927 ORTHO05D071668 1.1e-11 75.1 236 25.4
MCO12G090 Micromonas commoda HOM05D006927 ORTHO05D049054 6.9e-11 72.4 344 24.7
CBR_g4745 Chara braunii HOM05D000019 ORTHO05D000002 1.2e-10 71.6 68 47.1
PRCOL_00002844 Prasinoderma coloniale HOM05D006927 ORTHO05D049054 3.8e-09 66.6 157 34.4
C09p59490 Brassica napus HOM05D000005 ORTHO05D040849 1.0e-06 58.5 109 38.5


User provided reference genes

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