Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc11g0005570 Simmondsia chinensis HOM05D007596 ORTHO05D009672 1.2e-48 196.1 87 100.0
Sc11g0005890 Simmondsia chinensis HOM05D007596 ORTHO05D009672 1.5e-43 179.1 87 93.1
Sc04g0001910 Simmondsia chinensis HOM05D007596 ORTHO05D009672 3.9e-28 127.9 61 91.8
SGA_v2.0_scaffold90G27960 Striga asiatica HOM05D007596 ORTHO05D009672 4.9e-23 110.9 61 77.0
SGA_v2.0_scaffold90G27962 Striga asiatica HOM05D007596 ORTHO05D009672 4.9e-23 110.9 61 77.0
Lsat_1_v5_gn_4_73100 Lactuca sativa HOM05D007596 ORTHO05D009672 1.1e-22 109.8 61 75.4
EL10Ac5g10784 Beta vulgaris HOM05D007596 ORTHO05D009672 1.4e-22 109.4 60 75.0
ECA232G2922 Erigeron canadensis HOM05D007596 ORTHO05D009672 1.9e-22 109.0 61 73.8
Nn4g22825 Nelumbo nucifera HOM05D007596 ORTHO05D009672 3.2e-22 108.2 59 72.9
Peaxi162Scf00689g00036 Petunia axillaris HOM05D007596 ORTHO05D009672 4.1e-22 107.8 58 77.6
Solyc06g071380.3 Solanum lycopersicum HOM05D007596 ORTHO05D009672 4.1e-22 107.8 58 77.6
Sopen06g027660 Solanum pennellii HOM05D007596 ORTHO05D009672 4.1e-22 107.8 58 77.6
HanXRQChr16g0503661 Helianthus annuus HOM05D007596 ORTHO05D009672 5.4e-22 107.5 61 73.8
TAR374G1438 Trochodendron aralioides HOM05D007596 ORTHO05D009672 5.4e-22 107.5 59 74.6
Dinv20674 Davidia involucrata HOM05D007596 ORTHO05D009672 9.2e-22 106.7 59 71.2
Nitab4.5_0007803g0020 Nicotiana tabacum HOM05D007596 ORTHO05D009672 9.2e-22 106.7 58 75.9
PGSC0003DMG400027097 Solanum tuberosum HOM05D007596 ORTHO05D009672 9.2e-22 106.7 58 75.9
MSTRG.11436 Avicennia marina HOM05D007596 ORTHO05D009672 1.2e-21 106.3 59 76.3
Nitab4.5_0000003g0490 Nicotiana tabacum HOM05D007596 ORTHO05D009672 1.2e-21 106.3 58 74.1
Hund02735 Selenicereus undatus HOM05D007596 ORTHO05D009672 1.2e-21 106.3 60 71.7
Cc04_g12800 Coffea canephora HOM05D007596 ORTHO05D009672 2.1e-21 105.5 59 71.2
SalBow5G3112 Salvia bowleyana HOM05D007596 ORTHO05D009672 2.1e-21 105.5 72 65.3
MBI15_g31109_MAGBIO Magnolia biondii HOM05D007596 ORTHO05D009672 2.7e-21 105.1 58 74.1
Oeu041561.1 Olea europaea HOM05D007596 ORTHO05D009672 2.7e-21 105.1 59 72.9
ATR0691G114 Amborella trichopoda HOM05D007596 ORTHO05D009672 4.6e-21 104.4 59 71.2
Migut.I00032 Erythranthe guttata HOM05D007596 ORTHO05D009672 4.6e-21 104.4 61 72.1
CSS0015692 Camellia sinensis var. sinensis HOM05D007596 ORTHO05D009672 7.8e-21 103.6 61 67.2
Lj9A451T97 Lonicera japonica HOM05D007596 ORTHO05D009672 1.7e-20 102.4 58 70.7
Aqoxy3G00967 Aquilegia oxysepala HOM05D007596 ORTHO05D009672 3.0e-20 101.7 59 72.9
GSVIVG01007788001 Vitis vinifera HOM05D007596 ORTHO05D009672 3.9e-20 101.3 61 70.5
DCAR_026124 Daucus carota HOM05D007596 ORTHO05D009672 5.1e-20 100.9 58 72.4
Ah.13g077910 Amaranthus hybridus HOM05D007596 ORTHO05D004562 1.5e-19 99.4 52 76.9
PSO832G1789 Papaver somniferum HOM05D007596 ORTHO05D009672 1.5e-19 99.4 58 69.0
Rhsim12G0163300 Rhododendron simsii HOM05D007596 ORTHO05D009672 1.5e-19 99.4 61 63.9
TWI15G1048 Tripterygium wilfordii HOM05D007596 ORTHO05D009672 1.9e-19 99.0 61 68.9
Hma1.2p1_0701F.1_g205970 Hydrangea macrophylla HOM05D007596 ORTHO05D009672 2.5e-19 98.6 61 68.9
Prupe.5G176300 Prunus persica HOM05D007596 ORTHO05D009672 3.3e-19 98.2 58 70.7
PSO063G6591 Papaver somniferum HOM05D007596 ORTHO05D009672 4.3e-19 97.8 58 69.0
CANSAT80G2510 Cannabis sativa HOM05D007596 ORTHO05D009672 5.6e-19 97.4 58 67.2
Haze_07490 Corylus avellana HOM05D007596 ORTHO05D009672 5.6e-19 97.4 61 65.6
vmacro16599 Vaccinium macrocarpon HOM05D007596 ORTHO05D009672 7.3e-19 97.1 61 65.6
HPP92_019181 Vanilla planifolia HOM05D007596 ORTHO05D009672 7.3e-19 97.1 53 75.5
Atru.chr9.2439 Acer truncatum HOM05D007596 ORTHO05D009672 3.6e-18 94.7 53 71.7
CiPaw.11G029100 Carya illinoinensis HOM05D007596 ORTHO05D009672 3.6e-18 94.7 61 63.9
Psat4g056920 Pisum sativum HOM05D007596 ORTHO05D009672 3.6e-18 94.7 53 71.7
QL10p012241 Quercus lobata HOM05D007596 ORTHO05D009672 4.7e-18 94.4 61 60.7
Ca_21906_v3 Cicer arietinum L. HOM05D007596 ORTHO05D009672 6.2e-18 94.0 53 69.8
Ca_21924_v3 Cicer arietinum L. HOM05D007596 ORTHO05D009672 6.2e-18 94.0 53 69.8
SMO347G0014 Selaginella moellendorffii HOM05D007596 ORTHO05D009672 6.2e-18 94.0 59 61.0
Eucgr.K02859 Eucalyptus grandis HOM05D007596 ORTHO05D009672 8.1e-18 93.6 54 72.2
unitig_26.g8797 Utricularia gibba HOM05D007596 ORTHO05D009672 8.1e-18 93.6 50 76.0
RcHm_v2.0_Chr7g0193891 Rosa chinensis HOM05D007596 ORTHO05D009672 1.1e-17 93.2 53 69.8
Duzib205G0154 Durio zibethinus HOM05D007596 ORTHO05D009672 1.4e-17 92.8 61 62.3
MD06G1177600 Malus domestica HOM05D007596 ORTHO05D009672 1.4e-17 92.8 58 65.5
COL.COLO4_34057 Corchorus olitorius HOM05D007596 ORTHO05D009672 2.4e-17 92.0 54 66.7
FvH4_5g05110 Fragaria vesca HOM05D007596 ORTHO05D009672 2.4e-17 92.0 53 69.8
FAN04G0664 Fragaria x ananassa HOM05D007596 ORTHO05D009672 2.4e-17 92.0 53 69.8
FAN08G2413 Fragaria x ananassa HOM05D007596 ORTHO05D009672 2.4e-17 92.0 53 69.8
FAN13G0067 Fragaria x ananassa HOM05D007596 ORTHO05D009672 2.4e-17 92.0 53 69.8
FAN18G0106 Fragaria x ananassa HOM05D007596 ORTHO05D009672 2.4e-17 92.0 53 69.8
Lalb_Chr13g0297881 Lupinus albus HOM05D007596 ORTHO05D009672 2.4e-17 92.0 53 67.9
Medtr4g106630 Medicago truncatula HOM05D007596 ORTHO05D009672 3.1e-17 91.7 53 69.8
Thecc.03G008700 Theobroma cacao HOM05D007596 ORTHO05D009672 3.1e-17 91.7 61 60.7
Ciclev10021737m.g Citrus clementina HOM05D007596 ORTHO05D009672 4.0e-17 91.3 53 69.8
CsaV3_1G008350 Cucumis sativus L. HOM05D007596 ORTHO05D009672 4.0e-17 91.3 53 67.9
Gorai.006G187000 Gossypium raimondii HOM05D007596 ORTHO05D009672 4.0e-17 91.3 53 69.8
Sed0010804 Sechium edule HOM05D007596 ORTHO05D009672 5.2e-17 90.9 53 66.0
TPR.G37562 Trifolium pratense HOM05D007596 ORTHO05D009672 5.2e-17 90.9 53 69.8
ClCG01G013000 Citrullus lanatus HOM05D007596 ORTHO05D009672 6.8e-17 90.5 53 64.2
Glyma.05G036200 Glycine max HOM05D007596 ORTHO05D009672 6.8e-17 90.5 53 69.8
Gohir.A09G169500 Gossypium hirsutum HOM05D007596 ORTHO05D009672 1.2e-16 89.7 53 67.9
arahy.Tifrunner.gnm1.ann1.3E9X4W Arachis hypogaea HOM05D007596 ORTHO05D009672 1.5e-16 89.4 53 69.8
Gohir.D09G165200 Gossypium hirsutum HOM05D007596 ORTHO05D009672 1.5e-16 89.4 53 67.9
Manes.06G103100 Manihot esculenta HOM05D007596 ORTHO05D009672 1.5e-16 89.4 51 70.6
Sabra12G0056400 Salix brachista HOM05D007596 ORTHO05D009672 2.0e-16 89.0 53 67.9
Lj4g0018893 Lotus japonicus HOM05D007596 ORTHO05D009672 2.6e-16 88.6 53 66.0
COL.COLO4_33480 Corchorus olitorius HOM05D007596 ORTHO05D009672 4.4e-16 87.8 54 64.8
arahy.Tifrunner.gnm1.ann1.8F9XT7 Arachis hypogaea HOM05D007596 ORTHO05D009672 7.6e-16 87.0 53 67.9
Potri.012G078600 Populus trichocarpa HOM05D007596 ORTHO05D009672 7.6e-16 87.0 53 66.0
VMungo1215G2651 Vigna mungo HOM05D007596 ORTHO05D009672 7.6e-16 87.0 53 62.3
Phvul.003G198900 Phaseolus vulgaris HOM05D007596 ORTHO05D009672 1.3e-15 86.3 53 64.2
Psat4g101560 Pisum sativum HOM05D007596 ORTHO05D009672 2.2e-15 85.5 53 66.0
PGR044G0668 Punica granatum HOM05D007596 ORTHO05D009672 2.9e-15 85.1 59 61.0
Os04g0465800 Oryza sativa ssp. japonica HOM05D007596 ORTHO05D009672 9.2e-14 80.1 54 63.0
Zm00001eb080350 Zea mays HOM05D007596 ORTHO05D009672 6.0e-13 77.4 55 61.8
FAN18G0038 Fragaria x ananassa HOM05D007596 ORTHO05D009672 1.3e-10 69.7 45 62.2
FvH4_5g16630 Fragaria vesca HOM05D007596 ORTHO05D009672 1.4e-09 66.2 51 51.0
FAN18G2080 Fragaria x ananassa HOM05D007596 ORTHO05D009672 1.4e-09 66.2 51 51.0
SGA_v2.0_scaffold90G27974 Striga asiatica HOM05D001155 ORTHO05D001080 1.4e-09 66.2 58 53.4
Cpa.g.c40406 Carica papaya HOM05D007596 ORTHO05D009672 5.3e-09 64.3 42 61.9


User provided reference genes

Program Settings