Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc11g0005450 Simmondsia chinensis HOM05D000475 ORTHO05D011666 2.0e-142 509.2 286 100.0
Dinv21798 Davidia involucrata HOM05D000475 ORTHO05D000343 2.8e-27 126.7 259 39.0
CSS0035168 Camellia sinensis var. sinensis HOM05D000475 ORTHO05D000343 2.5e-23 113.6 261 37.2
Cc02_g05890 Coffea canephora HOM05D000475 ORTHO05D000343 1.2e-22 111.3 133 45.1
Actinidia33894 Actinidia chinensis HOM05D000475 ORTHO05D000343 1.0e-21 108.2 269 34.9
Rhsim03G0148200 Rhododendron simsii HOM05D000475 ORTHO05D000343 1.0e-21 108.2 253 36.4
vmacro06936 Vaccinium macrocarpon HOM05D000475 ORTHO05D000343 1.5e-20 104.4 122 49.2
Rhsim03G0148100 Rhododendron simsii HOM05D000475 ORTHO05D014148 1.3e-19 101.3 243 36.6
TAR633G1711 Trochodendron aralioides HOM05D000475 ORTHO05D000343 1.8e-18 97.4 138 44.9
HanXRQChr14g0458941 Helianthus annuus HOM05D000475 ORTHO05D000343 3.1e-18 96.7 127 48.0
Rhsim09G0080000 Rhododendron simsii HOM05D000475 ORTHO05D000343 4.1e-18 96.3 139 42.4
Thecc.09G230200 Theobroma cacao HOM05D000475 ORTHO05D000343 5.4e-18 95.9 285 33.0
Manes.09G112000 Manihot esculenta HOM05D000475 ORTHO05D000343 7.0e-18 95.5 137 40.1
EL10Ac2g04912 Beta vulgaris HOM05D000475 ORTHO05D000343 1.2e-17 94.7 117 48.7
QL08p064006 Quercus lobata HOM05D000475 ORTHO05D000343 2.0e-17 94.0 122 45.1
Actinidia11548 Actinidia chinensis HOM05D000475 ORTHO05D000343 3.5e-17 93.2 165 38.2
GSVIVG01032736001 Vitis vinifera HOM05D000475 ORTHO05D000343 1.3e-16 91.3 185 37.3
Potri.008G074200 Populus trichocarpa HOM05D000475 ORTHO05D000343 1.7e-16 90.9 131 42.7
Gohir.A09G168100 Gossypium hirsutum HOM05D000475 ORTHO05D000343 2.2e-16 90.5 174 36.2
Gohir.D09G164100 Gossypium hirsutum HOM05D000475 ORTHO05D000343 2.2e-16 90.5 137 38.0
AUR62012320 Chenopodium quinoa HOM05D000475 ORTHO05D000343 2.9e-16 90.1 129 42.6
TWI77G0406 Tripterygium wilfordii HOM05D000475 ORTHO05D000343 2.9e-16 90.1 150 41.3
AUR62022960 Chenopodium quinoa HOM05D000475 ORTHO05D000343 3.8e-16 89.7 129 42.6
SGA_v2.0_scaffold60G20952 Striga asiatica HOM05D000475 ORTHO05D000343 3.8e-16 89.7 119 42.9
Dinv12172 Davidia involucrata HOM05D000475 ORTHO05D014148 5.0e-16 89.4 141 41.1
Migut.F00623 Erythranthe guttata HOM05D000475 ORTHO05D000343 5.0e-16 89.4 134 41.0
Dinv35407 Davidia involucrata HOM05D000475 ORTHO05D000343 6.5e-16 89.0 145 38.6
Gorai.006G185700 Gossypium raimondii HOM05D000475 ORTHO05D000343 6.5e-16 89.0 137 37.2
TWI38G2109 Tripterygium wilfordii HOM05D000475 ORTHO05D000343 1.1e-15 88.2 137 43.1
Duzib128G1179 Durio zibethinus HOM05D000475 ORTHO05D000343 1.5e-15 87.8 173 34.7
Nitab4.5_0002854g0040 Nicotiana tabacum HOM05D000475 ORTHO05D000343 1.5e-15 87.8 229 30.1
Hma1.2p1_0501F.1_g167350 Hydrangea macrophylla HOM05D000475 ORTHO05D000343 1.9e-15 87.4 133 38.3
Lj1A962T107 Lonicera japonica HOM05D000475 ORTHO05D000343 1.9e-15 87.4 179 35.8
DCAR_028563 Daucus carota HOM05D000475 ORTHO05D000343 3.2e-15 86.7 184 34.8
Cpa.g.sc5.240 Carica papaya HOM05D000475 ORTHO05D000343 4.2e-15 86.3 166 34.9
CiPaw.10G160700 Carya illinoinensis HOM05D000475 ORTHO05D000343 4.2e-15 86.3 154 37.0
COL.COLO4_24866 Corchorus olitorius HOM05D000475 ORTHO05D000343 4.2e-15 86.3 185 33.5
Haze_21089 Corylus avellana HOM05D000475 ORTHO05D000343 4.2e-15 86.3 134 41.8
Haze_17294 Corylus avellana HOM05D000475 ORTHO05D000343 1.6e-14 84.3 255 33.3
CANSAT56G0883 Cannabis sativa HOM05D000475 ORTHO05D000343 2.1e-14 84.0 134 39.6
Duzib093G0789 Durio zibethinus HOM05D000475 ORTHO05D000343 2.8e-14 83.6 125 39.2
Sc01g0005730 Simmondsia chinensis HOM05D000475 ORTHO05D000343 4.7e-14 82.8 127 40.9
Gohir.A07G164778 Gossypium hirsutum HOM05D000475 ORTHO05D011666 6.1e-14 82.4 134 38.8
Migut.L02045 Erythranthe guttata HOM05D000475 ORTHO05D000343 8.0e-14 82.0 135 36.3
Nitab4.5_0000355g0200 Nicotiana tabacum HOM05D000475 ORTHO05D000343 8.0e-14 82.0 131 37.4
TWI63G0323 Tripterygium wilfordii HOM05D000475 ORTHO05D000343 8.0e-14 82.0 137 41.6
Ciclev10011220m.g Citrus clementina HOM05D000475 ORTHO05D000343 1.4e-13 81.3 138 38.4
MBI15_g28858_MAGBIO Magnolia biondii HOM05D000475 ORTHO05D000343 1.4e-13 81.3 168 36.9
Peaxi162Scf00284g00231 Petunia axillaris HOM05D000475 ORTHO05D000343 1.4e-13 81.3 207 33.8
Aqoxy3G02092 Aquilegia oxysepala HOM05D000475 ORTHO05D000343 1.8e-13 80.9 138 37.0
GSVIVG01030266001 Vitis vinifera HOM05D000475 ORTHO05D000343 1.8e-13 80.9 182 33.0
Sabra16G0130800 Salix brachista HOM05D000475 ORTHO05D000343 2.3e-13 80.5 138 35.5
PGR031G2393 Punica granatum HOM05D000475 ORTHO05D000343 3.0e-13 80.1 155 33.5
arahy.Tifrunner.gnm1.ann1.VSZX8Y Arachis hypogaea HOM05D000475 ORTHO05D000343 4.0e-13 79.7 147 37.4
Lj2A66G60 Lonicera japonica HOM05D000475 ORTHO05D000343 4.0e-13 79.7 161 34.8
arahy.Tifrunner.gnm1.ann1.LAF8WM Arachis hypogaea HOM05D000475 ORTHO05D000343 5.2e-13 79.3 147 37.4
CiPaw.09G215600 Carya illinoinensis HOM05D000475 ORTHO05D000343 5.2e-13 79.3 128 37.5
ECA238G4258 Erigeron canadensis HOM05D000475 ORTHO05D000343 5.2e-13 79.3 136 38.2
Peaxi162Scf00264g00858 Petunia axillaris HOM05D000001 ORTHO05D000003 5.2e-13 79.3 120 39.2
Glyma.18G207500 Glycine max HOM05D000475 ORTHO05D000343 6.8e-13 79.0 130 37.7
Cfa001257 Carpinus fangiana HOM05D000475 ORTHO05D000343 1.2e-12 78.2 250 32.0
Sopen06g016160 Solanum pennellii HOM05D000475 ORTHO05D000343 1.5e-12 77.8 234 28.6
arahy.Tifrunner.gnm1.ann1.BL5G13 Arachis hypogaea HOM05D000475 ORTHO05D000343 2.6e-12 77.0 124 37.9
Nitab4.5_0000047g0200 Nicotiana tabacum HOM05D000475 ORTHO05D000343 3.4e-12 76.6 122 38.5
Nitab4.5_0001226g0100 Nicotiana tabacum HOM05D000475 ORTHO05D000343 3.4e-12 76.6 122 38.5
CANSAT35G0609 Cannabis sativa HOM05D000475 ORTHO05D000343 4.4e-12 76.3 152 34.2
arahy.Tifrunner.gnm1.ann1.PI8N4R Arachis hypogaea HOM05D000475 ORTHO05D000343 1.3e-11 74.7 190 32.6
CiPaw.02G196700 Carya illinoinensis HOM05D000475 ORTHO05D000343 1.3e-11 74.7 134 35.8
DCAR_018667 Daucus carota HOM05D000475 ORTHO05D000343 1.3e-11 74.7 134 34.3
ECA238G4627 Erigeron canadensis HOM05D000475 ORTHO05D000343 1.3e-11 74.7 209 34.9
Aqoxy3G02479 Aquilegia oxysepala HOM05D000475 ORTHO05D000343 1.7e-11 74.3 138 33.3
FvH4_6g10591 Fragaria vesca HOM05D000475 ORTHO05D000343 1.7e-11 74.3 156 35.3
HanXRQChr16g0510201 Helianthus annuus HOM05D000475 ORTHO05D000343 1.7e-11 74.3 135 36.3
THA.LOC104816526 Tarenaya hassleriana HOM05D000475 ORTHO05D000343 1.7e-11 74.3 137 34.3
Aqoxy1G01279 Aquilegia oxysepala HOM05D000475 ORTHO05D000343 2.2e-11 73.9 138 36.2
Cc06_g00720 Coffea canephora HOM05D000475 ORTHO05D000343 2.2e-11 73.9 124 37.9
Nitab4.5_0001703g0060 Nicotiana tabacum HOM05D000475 ORTHO05D000343 2.8e-11 73.6 146 35.6
Peaxi162Scf00744g00336 Petunia axillaris HOM05D000475 ORTHO05D000343 2.8e-11 73.6 148 32.4
arahy.Tifrunner.gnm1.ann1.E8CB8M Arachis hypogaea HOM05D000475 ORTHO05D000343 3.7e-11 73.2 136 30.1
SGA_v2.0_scaffold240G44069 Striga asiatica HOM05D000475 ORTHO05D000343 3.7e-11 73.2 134 35.8
Eucgr.A00623 Eucalyptus grandis HOM05D000475 ORTHO05D000343 4.9e-11 72.8 120 36.7
Sopen10g027980 Solanum pennellii HOM05D001655 ORTHO05D000343 4.9e-11 72.8 118 37.3
arahy.Tifrunner.gnm1.ann1.RFF9M1 Arachis hypogaea HOM05D000475 ORTHO05D000343 6.3e-11 72.4 136 31.6
COL.COLO4_14448 Corchorus olitorius HOM05D000475 ORTHO05D000343 8.3e-11 72.0 143 34.3
Lalb_Chr03g0043501 Lupinus albus HOM05D000475 ORTHO05D000343 8.3e-11 72.0 234 27.8
Lj1g0000774 Lotus japonicus HOM05D000475 ORTHO05D000343 1.1e-10 71.6 118 33.9
Nn2g14564 Nelumbo nucifera HOM05D000475 ORTHO05D000343 1.1e-10 71.6 182 35.7
Nitab4.5_0003850g0020 Nicotiana tabacum HOM05D000475 ORTHO05D000343 1.1e-10 71.6 122 36.9
Nitab4.5_0004057g0020 Nicotiana tabacum HOM05D000475 ORTHO05D000343 1.4e-10 71.2 149 34.9
ClCG11G005960 Citrullus lanatus HOM05D000475 ORTHO05D000343 1.8e-10 70.9 91 45.1
Phvul.008G092000 Phaseolus vulgaris HOM05D000475 ORTHO05D000343 1.8e-10 70.9 130 33.1
Lalb_Chr23g0277141 Lupinus albus HOM05D000475 ORTHO05D000343 2.4e-10 70.5 198 32.3
TPR.G35832 Trifolium pratense HOM05D000475 ORTHO05D000343 3.1e-10 70.1 126 33.3
Lsat_1_v5_gn_2_125761 Lactuca sativa HOM05D000475 ORTHO05D000343 4.1e-10 69.7 81 46.9
PSO478G1812 Papaver somniferum HOM05D000475 ORTHO05D000343 4.1e-10 69.7 136 36.0
Prupe.6G285100 Prunus persica HOM05D000475 ORTHO05D000343 4.1e-10 69.7 147 35.4
AUR62036403 Chenopodium quinoa HOM05D000475 ORTHO05D000343 5.4e-10 69.3 190 31.1
CAN.G629.5 Capsicum annuum HOM05D000475 ORTHO05D000343 7.0e-10 68.9 260 28.5
Potri.016G127600 Populus trichocarpa HOM05D000475 ORTHO05D000343 7.0e-10 68.9 273 25.6
PGSC0003DMG400011861 Solanum tuberosum HOM05D000475 ORTHO05D000343 7.0e-10 68.9 147 30.6
Lalb_Chr01g0023371 Lupinus albus HOM05D000475 ORTHO05D000343 9.2e-10 68.6 140 32.9
AUR62030756 Chenopodium quinoa HOM05D000475 ORTHO05D000343 1.6e-09 67.8 115 39.1
Aqoxy3G02296 Aquilegia oxysepala HOM05D000475 ORTHO05D000343 2.0e-09 67.4 138 29.7
Nitab4.5_0001106g0120 Nicotiana tabacum HOM05D000475 ORTHO05D000343 3.5e-09 66.6 120 37.5
Ca_07698_v3 Cicer arietinum L. HOM05D000475 ORTHO05D000343 4.5e-09 66.2 93 38.7
VMungo1383G1412 Vigna mungo HOM05D000475 ORTHO05D000343 4.5e-09 66.2 112 40.2
Lsat_1_v5_gn_8_104940 Lactuca sativa HOM05D000475 ORTHO05D000343 5.9e-09 65.9 124 35.5
Lj2g0010150 Lotus japonicus HOM05D000475 ORTHO05D000343 7.8e-09 65.5 228 27.6
Psat3g124320 Pisum sativum HOM05D000475 ORTHO05D000343 7.8e-09 65.5 125 34.4
EL10Ac5g12479 Beta vulgaris HOM05D000475 ORTHO05D000343 1.0e-08 65.1 155 32.9
Hund10892 Selenicereus undatus HOM05D000475 ORTHO05D000343 1.0e-08 65.1 131 31.3
CAN.G756.29 Capsicum annuum HOM05D000222 ORTHO05D012343 1.3e-08 64.7 88 43.2
Carub.0006s0017 Capsella rubella HOM05D000475 ORTHO05D000343 1.7e-08 64.3 137 32.8
CAN.G1225.6 Capsicum annuum HOM05D000475 ORTHO05D000343 2.3e-08 63.9 117 33.3
MD12G1180200 Malus domestica HOM05D000475 ORTHO05D000343 2.3e-08 63.9 156 34.6
PGSC0003DMG400011621 Solanum tuberosum HOM05D000475 ORTHO05D000343 2.3e-08 63.9 124 37.9
ATR0594G100 Amborella trichopoda HOM05D000475 ORTHO05D000343 2.9e-08 63.5 188 30.9
CARHR212020 Cardamine hirsuta HOM05D000475 ORTHO05D000343 3.8e-08 63.2 128 32.8
Haze_17377 Corylus avellana HOM05D000475 ORTHO05D000343 3.8e-08 63.2 84 41.7
Eucgr.G03101 Eucalyptus grandis HOM05D000475 ORTHO05D011666 3.8e-08 63.2 185 31.4
Sopen09g008410 Solanum pennellii HOM05D000475 ORTHO05D000343 3.8e-08 63.2 147 35.4
Thhalv10012920m.g Eutrema salsugineum HOM05D000475 ORTHO05D000343 5.0e-08 62.8 133 34.6
Sed0026269 Sechium edule HOM05D000475 ORTHO05D000343 5.0e-08 62.8 128 35.2
ECA236G0948 Erigeron canadensis HOM05D000475 ORTHO05D000343 6.6e-08 62.4 128 35.2
HanXRQChr01g0007041 Helianthus annuus HOM05D000475 ORTHO05D000343 6.6e-08 62.4 140 32.9
Oeu038716.1 Olea europaea HOM05D000475 ORTHO05D000343 6.6e-08 62.4 87 42.5
TPR.G4429 Trifolium pratense HOM05D000475 ORTHO05D000343 6.6e-08 62.4 133 30.8
BcaC06g31955 Brassica carinata HOM05D000389 ORTHO05D000287 8.6e-08 62.0 145 32.4
BcaC06g31981 Brassica carinata HOM05D000475 ORTHO05D000343 8.6e-08 62.0 145 32.4
Aa31LG1G23280 Aethionema arabicum HOM05D000475 ORTHO05D000343 1.5e-07 61.2 136 30.9
ECA248G1682 Erigeron canadensis HOM05D000475 ORTHO05D000343 1.5e-07 61.2 141 32.6
Solyc09g015120.4 Solanum lycopersicum HOM05D000475 ORTHO05D000343 1.5e-07 61.2 147 34.7
Zm00001eb282100 Zea mays HOM05D000475 ORTHO05D000343 1.5e-07 61.2 140 31.4
AL6G10390 Arabidopsis lyrata HOM05D000475 ORTHO05D000343 1.9e-07 60.8 257 26.1
Os01g0165200 Oryza sativa ssp. japonica HOM05D000475 ORTHO05D000343 1.9e-07 60.8 118 33.1
CsaV3_3G033400 Cucumis sativus L. HOM05D000475 ORTHO05D000343 2.5e-07 60.5 126 34.1
HanXRQChr16g0510221 Helianthus annuus HOM05D000475 ORTHO05D000343 2.5e-07 60.5 120 34.2
QL07p033892 Quercus lobata HOM05D000475 ORTHO05D000343 2.5e-07 60.5 47 57.4
Sp6g40920 Schrenkiella parvula HOM05D000475 ORTHO05D000343 2.5e-07 60.5 174 28.2
HanXRQChr16g0510211 Helianthus annuus HOM05D000475 ORTHO05D000343 3.3e-07 60.1 134 35.8
MD04G1166900 Malus domestica HOM05D000475 ORTHO05D000343 5.6e-07 59.3 127 33.1
A10p33760 Brassica napus HOM05D000475 ORTHO05D000343 7.3e-07 58.9 129 34.1
BraA10t45406Z Brassica rapa HOM05D000475 ORTHO05D000343 7.3e-07 58.9 129 34.1
ClCG10G022460 Citrullus lanatus HOM05D000475 ORTHO05D000343 7.3e-07 58.9 133 33.8
THA.LOC104816176 Tarenaya hassleriana HOM05D000475 ORTHO05D000343 7.3e-07 58.9 143 31.5
BcaNung03297 Brassica carinata HOM05D000475 ORTHO05D000343 9.5e-07 58.5 144 29.9
BolC9t60202H Brassica oleracea HOM05D000475 ORTHO05D000343 9.5e-07 58.5 144 29.9
Atru.chr8.2340 Acer truncatum HOM05D000475 ORTHO05D000343 1.6e-06 57.8 99 37.4
AT5G01660 Arabidopsis thaliana HOM05D000475 ORTHO05D000343 1.6e-06 57.8 131 34.4
C09p74700 Brassica napus HOM05D000475 ORTHO05D000343 1.6e-06 57.8 146 30.8
Peaxi162Scf00009g01231 Petunia axillaris HOM05D000475 ORTHO05D000343 1.6e-06 57.8 89 43.8
Sed0000701 Sechium edule HOM05D000475 ORTHO05D000343 1.6e-06 57.8 185 30.8
Os05g0164900 Oryza sativa ssp. japonica HOM05D000475 ORTHO05D000343 2.1e-06 57.4 118 30.5
QL05p049129 Quercus lobata HOM05D000475 ORTHO05D000343 2.1e-06 57.4 47 55.3
RcHm_v2.0_Chr3g0461581 Rosa chinensis HOM05D000475 ORTHO05D000343 2.8e-06 57.0 162 30.9
Aqoxy1G01277 Aquilegia oxysepala HOM05D000475 ORTHO05D000343 3.6e-06 56.6 138 31.2
CAN.G1363.5 Capsicum annuum HOM05D000222 ORTHO05D011666 3.6e-06 56.6 47 55.3
CAN.G6.22 Capsicum annuum HOM05D000475 ORTHO05D011666 3.6e-06 56.6 59 44.1
MELO3C008322.2 Cucumis melo HOM05D000475 ORTHO05D000343 3.6e-06 56.6 132 34.1
Ah.12g059110 Amaranthus hybridus HOM05D000475 ORTHO05D000343 4.7e-06 56.2 165 30.3
Rhsim03G0110100 Rhododendron simsii HOM05D000475 ORTHO05D011666 6.1e-06 55.8 51 51.0


User provided reference genes

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