Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc11g0005320 Simmondsia chinensis HOM05D004070 ORTHO05D004904 0.0e+00 1101.3 521 100.0
Dinv10587 Davidia involucrata HOM05D004070 ORTHO05D004904 1.4e-197 693.3 536 62.3
GSVIVG01032751001 Vitis vinifera HOM05D004070 ORTHO05D004904 6.9e-197 691.0 535 61.1
CSS0045603 Camellia sinensis var. sinensis HOM05D004070 ORTHO05D004904 2.9e-195 685.6 532 62.2
Lj8A62T48 Lonicera japonica HOM05D004070 ORTHO05D004904 3.9e-192 675.2 523 60.0
Lj1A961T78 Lonicera japonica HOM05D004070 ORTHO05D004904 8.7e-192 674.1 536 60.1
Cc02_g06030 Coffea canephora HOM05D004070 ORTHO05D004904 7.3e-191 671.0 532 61.8
TAR623G0471 Trochodendron aralioides HOM05D004070 ORTHO05D004904 2.6e-188 662.5 545 60.0
EL10Ac2g04896 Beta vulgaris HOM05D004070 ORTHO05D004904 3.4e-188 662.1 528 59.8
QL08p063798 Quercus lobata HOM05D004070 ORTHO05D004904 1.4e-186 656.8 526 59.7
Rhsim03G0147100 Rhododendron simsii HOM05D004070 ORTHO05D004904 3.5e-185 652.1 522 59.6
AUR62022946 Chenopodium quinoa HOM05D004070 ORTHO05D004904 4.6e-185 651.7 525 57.7
vmacro06948 Vaccinium macrocarpon HOM05D004070 ORTHO05D004904 6.0e-185 651.4 549 57.9
DCAR_011846 Daucus carota HOM05D004070 ORTHO05D004904 1.8e-184 649.8 525 58.5
Thecc.10G010900 Theobroma cacao HOM05D004070 ORTHO05D004904 1.8e-184 649.8 524 58.2
Prupe.2G256300 Prunus persica HOM05D004070 ORTHO05D004904 1.1e-183 647.1 533 58.5
Duzib128G0764 Durio zibethinus HOM05D004070 ORTHO05D004904 1.5e-183 646.7 528 57.8
MD01G1158000 Malus domestica HOM05D004070 ORTHO05D004904 1.9e-183 646.4 532 59.6
Nitab4.5_0003710g0040 Nicotiana tabacum HOM05D004070 ORTHO05D004904 2.5e-183 646.0 530 58.1
Sopen06g016660 Solanum pennellii HOM05D004070 ORTHO05D004904 2.5e-183 646.0 531 58.8
Solyc06g050930.3 Solanum lycopersicum HOM05D004070 ORTHO05D004904 4.3e-183 645.2 531 58.6
Manes.10G008700 Manihot esculenta HOM05D004070 ORTHO05D004904 2.8e-182 642.5 527 57.9
Nitab4.5_0000058g0090 Nicotiana tabacum HOM05D004070 ORTHO05D004904 3.7e-182 642.1 530 57.4
Sabra10G0141400 Salix brachista HOM05D004070 ORTHO05D004904 3.7e-182 642.1 535 58.5
AUR62012305 Chenopodium quinoa HOM05D004070 ORTHO05D004904 4.8e-182 641.7 527 57.3
Potri.010G184200 Populus trichocarpa HOM05D004070 ORTHO05D004904 6.2e-182 641.3 535 57.8
CAN.G19.7 Capsicum annuum HOM05D004070 ORTHO05D004904 3.4e-180 635.6 532 57.5
PSO765G0033 Papaver somniferum HOM05D004070 ORTHO05D004904 1.7e-179 633.3 541 55.8
Eucgr.J00174 Eucalyptus grandis HOM05D004070 ORTHO05D004904 2.9e-179 632.5 551 56.3
ECA238G2061 Erigeron canadensis HOM05D004070 ORTHO05D004904 3.8e-179 632.1 525 57.5
Peaxi162Scf00284g00526 Petunia axillaris HOM05D004070 ORTHO05D004904 4.9e-179 631.7 529 57.1
MD07G1226700 Malus domestica HOM05D004070 ORTHO05D004904 3.2e-178 629.0 531 58.0
PSO349G0044 Papaver somniferum HOM05D004070 ORTHO05D004904 7.1e-178 627.9 541 55.5
Glyma.11G232700 Glycine max HOM05D004070 ORTHO05D004904 1.2e-177 627.1 524 58.4
Gorai.011G290600 Gossypium raimondii HOM05D004070 ORTHO05D004904 2.7e-177 625.9 524 57.3
Gohir.A10G238300 Gossypium hirsutum HOM05D004070 ORTHO05D004904 3.5e-177 625.5 524 56.9
Rhsim03G0146900 Rhododendron simsii HOM05D004070 ORTHO05D004904 7.9e-177 624.4 546 56.4
Aqoxy1G01303 Aquilegia oxysepala HOM05D004070 ORTHO05D004904 1.3e-176 623.6 540 55.9
Ciclev10031026m.g Citrus clementina HOM05D004070 ORTHO05D004904 1.3e-176 623.6 528 57.0
CiPaw.02G195800 Carya illinoinensis HOM05D004070 ORTHO05D004904 1.8e-176 623.2 524 58.2
TWI73G0078 Tripterygium wilfordii HOM05D004070 ORTHO05D004904 1.8e-176 623.2 534 56.7
Gohir.D10G250200 Gossypium hirsutum HOM05D004070 ORTHO05D004904 3.0e-176 622.5 523 57.2
Phvul.001G245900 Phaseolus vulgaris HOM05D004070 ORTHO05D004904 3.0e-176 622.5 537 57.2
CiPaw.12G018900 Carya illinoinensis HOM05D004070 ORTHO05D004904 3.9e-176 622.1 524 57.8
VMungo1383G0354 Vigna mungo HOM05D004070 ORTHO05D004904 1.5e-175 620.2 527 57.9
Ciclev10030777m.g Citrus clementina HOM05D004070 ORTHO05D004904 2.5e-175 619.4 532 56.2
Gorai.012G079500 Gossypium raimondii HOM05D004070 ORTHO05D004904 3.3e-175 619.0 545 54.9
RcHm_v2.0_Chr1g0370971 Rosa chinensis HOM05D004070 ORTHO05D004904 3.3e-175 619.0 533 57.6
Oeu043174.1 Olea europaea HOM05D004070 ORTHO05D004904 2.8e-174 615.9 563 54.9
MSTRG.8925 Avicennia marina HOM05D004070 ORTHO05D004904 1.4e-173 613.6 533 56.1
FvH4_7g25120 Fragaria vesca HOM05D004070 ORTHO05D004904 1.4e-173 613.6 529 57.1
Ca_15154_v3 Cicer arietinum L. HOM05D004070 ORTHO05D004904 1.8e-173 613.2 528 56.4
Lalb_Chr08g0231511 Lupinus albus HOM05D004070 ORTHO05D004904 2.4e-173 612.8 527 57.1
Gohir.A05G332000 Gossypium hirsutum HOM05D004070 ORTHO05D004904 3.1e-173 612.5 545 54.5
SalBow3G0248 Salvia bowleyana HOM05D004070 ORTHO05D004904 4.0e-173 612.1 531 56.5
SalBow3G2100 Salvia bowleyana HOM05D004070 ORTHO05D004904 1.2e-172 610.5 531 56.5
Lj6g0014816 Lotus japonicus HOM05D004070 ORTHO05D004904 3.4e-172 609.0 528 56.8
PGR044G0681 Punica granatum HOM05D004070 ORTHO05D004904 1.0e-171 607.4 516 55.6
Glyma.14G056500 Glycine max HOM05D004070 ORTHO05D004904 1.3e-171 607.1 534 56.4
Lsat_1_v5_gn_2_125521 Lactuca sativa HOM05D004070 ORTHO05D004904 1.3e-171 607.1 522 56.9
Medtr3g071610 Medicago truncatula HOM05D004070 ORTHO05D004904 2.2e-171 606.3 529 56.0
Potri.010G184300 Populus trichocarpa HOM05D004070 ORTHO05D004904 3.8e-171 605.5 536 55.4
Migut.F00635 Erythranthe guttata HOM05D004070 ORTHO05D004904 6.5e-171 604.7 527 56.5
Psat5g130680 Pisum sativum HOM05D004070 ORTHO05D004904 8.4e-171 604.4 529 56.5
Glyma.18G024300 Glycine max HOM05D004070 ORTHO05D004904 2.5e-170 602.8 527 56.9
Ah.16g103890 Amaranthus hybridus HOM05D004070 ORTHO05D004904 7.1e-170 601.3 521 57.2
TPR.G27736 Trifolium pratense HOM05D004070 ORTHO05D004904 3.5e-169 599.0 524 55.5
SGA_v2.0_scaffold60G20962 Striga asiatica HOM05D004070 ORTHO05D004904 6.1e-169 598.2 524 56.9
FAN03G3092 Fragaria x ananassa HOM05D004070 ORTHO05D004904 7.9e-169 597.8 542 56.1
Glyma.14G056600 Glycine max HOM05D004070 ORTHO05D004904 3.0e-168 595.9 530 55.8
CANSAT56G1738 Cannabis sativa HOM05D004070 ORTHO05D004904 5.7e-167 591.7 525 54.9
Glyma.02G262300 Glycine max HOM05D004070 ORTHO05D004904 1.6e-166 590.1 532 54.3
VMungo0647G1128 Vigna mungo HOM05D004070 ORTHO05D004904 2.2e-166 589.7 536 54.1
Atru.chr12.102 Acer truncatum HOM05D004070 ORTHO05D004904 4.8e-166 588.6 513 55.2
FAN06G4674 Fragaria x ananassa HOM05D004070 ORTHO05D004904 8.2e-166 587.8 569 53.3
HanXRQChr17g0536301 Helianthus annuus HOM05D004070 ORTHO05D004904 3.1e-165 585.9 525 53.1
Haze_17281 Corylus avellana HOM05D004070 ORTHO05D004904 2.0e-164 583.2 525 55.8
FAN01G1500 Fragaria x ananassa HOM05D004070 ORTHO05D004904 1.7e-163 580.1 552 54.5
Migut.F01473 Erythranthe guttata HOM05D004070 ORTHO05D004904 2.7e-161 572.8 526 54.9
Manes.10G008500 Manihot esculenta HOM05D004070 ORTHO05D004904 3.6e-161 572.4 560 52.1
Haze_17272 Corylus avellana HOM05D004070 ORTHO05D004904 2.8e-158 562.8 525 54.1
Sp6g37380 Schrenkiella parvula HOM05D004070 ORTHO05D004904 5.3e-157 558.5 531 50.1
Sed0002479 Sechium edule HOM05D004070 ORTHO05D004904 5.3e-157 558.5 538 52.6
ATR0174G011 Amborella trichopoda HOM05D004070 ORTHO05D004904 6.9e-157 558.1 545 52.3
CsaV3_5G010510 Cucumis sativus L. HOM05D004070 ORTHO05D004904 2.2e-155 553.1 535 50.5
BcaB01g05761 Brassica carinata HOM05D004070 ORTHO05D004904 2.9e-155 552.7 529 50.7
Aa31LG3G4060 Aethionema arabicum HOM05D004070 ORTHO05D004904 5.0e-155 552.0 530 52.8
Thhalv10012879m.g Eutrema salsugineum HOM05D004070 ORTHO05D004904 8.5e-155 551.2 528 49.8
AT5G05460 Arabidopsis thaliana HOM05D004070 ORTHO05D004904 1.4e-154 550.4 532 50.2
Sp3g09370 Schrenkiella parvula HOM05D004070 ORTHO05D004904 1.9e-154 550.1 532 51.1
A03p02310 Brassica napus HOM05D004070 ORTHO05D004904 3.2e-154 549.3 529 50.9
Carub.0006s0436 Capsella rubella HOM05D004070 ORTHO05D004904 7.2e-154 548.1 529 50.9
CARHR207790 Cardamine hirsuta HOM05D004070 ORTHO05D004904 9.4e-154 547.7 532 50.2
BraA03t09594Z Brassica rapa HOM05D004070 ORTHO05D004904 1.2e-153 547.4 526 51.0
THA.LOC104816686 Tarenaya hassleriana HOM05D004070 ORTHO05D004904 1.6e-153 547.0 540 49.6
arahy.Tifrunner.gnm1.ann1.L3EDXB Arachis hypogaea HOM05D004070 ORTHO05D004904 7.9e-153 544.7 526 53.6
AL6G15350 Arabidopsis lyrata HOM05D004070 ORTHO05D004904 1.0e-152 544.3 532 49.6
arahy.Tifrunner.gnm1.ann1.T4ULTV Arachis hypogaea HOM05D004070 ORTHO05D004904 3.0e-152 542.7 532 53.4
Duzib106G0498 Durio zibethinus HOM05D004070 ORTHO05D004904 5.1e-152 542.0 528 50.2
C03p02630 Brassica napus HOM05D004070 ORTHO05D004904 1.1e-151 540.8 529 50.1
BcaB01g05950 Brassica carinata HOM05D004070 ORTHO05D004904 2.6e-151 539.7 529 50.1
BolC3t12817H Brassica oleracea HOM05D004070 ORTHO05D004904 2.6e-151 539.7 529 50.1
Gohir.D04G070700 Gossypium hirsutum HOM05D004070 ORTHO05D004904 3.3e-151 539.3 545 49.5
ClCG07G004560 Citrullus lanatus HOM05D004070 ORTHO05D004904 2.2e-150 536.6 538 50.0
AT3G11040 Arabidopsis thaliana HOM05D004070 ORTHO05D004904 1.4e-149 533.9 532 50.2
Carub.0003s1033 Capsella rubella HOM05D004070 ORTHO05D004904 4.1e-149 532.3 532 49.4
Thhalv10020200m.g Eutrema salsugineum HOM05D004070 ORTHO05D004904 2.6e-148 529.6 532 49.8
BcaB04g21158 Brassica carinata HOM05D004070 ORTHO05D004904 4.5e-148 528.9 534 50.6
Nn2g10988 Nelumbo nucifera HOM05D004070 ORTHO05D004904 5.9e-148 528.5 536 50.6
Sabra10G0141500 Salix brachista HOM05D004070 ORTHO05D004904 5.9e-148 528.5 700 42.7
CARHR085620 Cardamine hirsuta HOM05D004070 ORTHO05D004904 1.0e-147 527.7 532 49.6
FAN10G1680 Fragaria x ananassa HOM05D004070 ORTHO05D004904 1.9e-146 523.5 577 49.4
Aa31LG11G6530 Aethionema arabicum HOM05D004070 ORTHO05D004904 2.5e-146 523.1 531 48.8
BolC1t05338H Brassica oleracea HOM05D004070 ORTHO05D004904 3.2e-146 522.7 548 49.1
Os05g0346500 Oryza sativa ssp. japonica HOM05D004070 ORTHO05D004904 1.4e-144 517.3 534 47.8
AL3G22590 Arabidopsis lyrata HOM05D004070 ORTHO05D004904 2.3e-144 516.5 532 49.1
CDE06G0669 Ceratophyllum demersum HOM05D004070 ORTHO05D004904 2.6e-143 513.1 502 51.6
ClCG07G004550 Citrullus lanatus HOM05D004070 ORTHO05D004904 1.6e-140 503.8 531 49.0
Zm00001eb347620 Zea mays HOM05D004070 ORTHO05D004904 4.5e-140 502.3 533 48.0
arahy.Tifrunner.gnm1.ann1.PDR9Z8 Arachis hypogaea HOM05D004070 ORTHO05D004904 5.0e-139 498.8 574 48.3
arahy.Tifrunner.gnm1.ann1.DADU25 Arachis hypogaea HOM05D004070 ORTHO05D004904 1.1e-138 497.7 574 48.3
CsaV3_5G010500 Cucumis sativus L. HOM05D004070 ORTHO05D004904 1.6e-137 493.8 536 46.8
BcaC09g48150 Brassica carinata HOM05D004070 ORTHO05D004904 1.1e-133 481.1 453 51.7
PGR142G0892 Punica granatum HOM05D004070 ORTHO05D004904 2.7e-132 476.5 532 48.3
CANSAT56G2024 Cannabis sativa HOM05D004070 ORTHO05D004904 5.5e-130 468.8 527 47.8
AL467U10010 Arabidopsis lyrata HOM05D004070 ORTHO05D004904 9.8e-127 458.0 533 44.5
SEGI_36115 Sequoiadendron giganteum HOM05D004070 ORTHO05D004904 2.2e-126 456.8 585 41.9
MELO3C018386.2 Cucumis melo HOM05D004070 ORTHO05D004904 1.6e-124 450.7 537 44.9
unitig_32.g11775 Utricularia gibba HOM05D004070 ORTHO05D004904 2.1e-121 440.3 511 45.8
MELO3C018385.2 Cucumis melo HOM05D004070 ORTHO05D004904 8.0e-113 411.8 547 41.0
PSO478G2175 Papaver somniferum HOM05D004070 ORTHO05D004904 5.8e-111 405.6 260 68.8
HPP92_006774 Vanilla planifolia HOM05D004070 ORTHO05D004904 1.5e-103 380.9 530 40.4
SGA_v2.0_scaffold395G50725 Striga asiatica HOM05D004070 ORTHO05D004904 9.8e-103 378.3 394 46.7
Glyma.02G262251 Glycine max HOM05D004070 ORTHO05D004904 5.4e-101 372.5 404 47.8
BraA01t04204Z Brassica rapa HOM05D004070 ORTHO05D004904 2.3e-99 367.1 460 42.8
COL.COLO4_25787 Corchorus olitorius HOM05D004070 ORTHO05D004904 1.1e-93 348.2 523 40.3
Dinv21779 Davidia involucrata HOM05D004070 ORTHO05D004904 7.1e-93 345.5 194 79.4
Mapoly0073s0082 Marchantia polymorpha HOM05D004070 ORTHO05D004904 3.1e-88 330.1 579 35.1
Pp3c4_19160 Physcomitrium patens HOM05D004070 ORTHO05D004904 1.6e-81 307.8 538 35.9
AagrBONN_evm.TU.Sc2ySwM_362.570 Anthoceros agrestis HOM05D004070 ORTHO05D004904 2.1e-81 307.4 541 34.2
SMO351G0021 Selaginella moellendorffii HOM05D004070 ORTHO05D004904 2.4e-77 293.9 286 50.7
PGSC0003DMG400023947 Solanum tuberosum HOM05D004070 ORTHO05D004904 1.0e-75 288.5 326 45.4
BcaC09g48154 Brassica carinata HOM05D004070 ORTHO05D004904 1.1e-72 278.5 186 67.2
CBR_g6382 Chara braunii HOM05D004070 ORTHO05D004904 9.3e-61 238.8 309 41.4
Cpa.g.sc19.130 Carica papaya HOM05D004070 ORTHO05D004904 7.6e-55 219.2 239 46.9
SGA_v2.0_scaffold395G50724 Striga asiatica HOM05D004070 ORTHO05D004904 1.2e-52 211.8 128 72.7
Cre13.g582250 Chlamydomonas reinhardtii HOM05D004070 ORTHO05D004904 6.9e-48 196.1 217 44.2
Cpa.g.sc19.132 Carica papaya HOM05D004070 ORTHO05D004904 3.7e-41 173.7 252 40.5
MELO3C034437.2 Cucumis melo HOM05D004070 ORTHO05D004904 1.4e-40 171.8 148 56.8
AT3G61010 Arabidopsis thaliana HOM05D004070 ORTHO05D004904 4.5e-39 166.8 382 32.5
Sopen01g021300 Solanum pennellii HOM05D004070 ORTHO05D004904 2.1e-36 157.9 210 38.6
arahy.Tifrunner.gnm1.ann1.0XTL3F Arachis hypogaea HOM05D004070 ORTHO05D004904 6.3e-33 146.4 135 50.4
Dinv21778 Davidia involucrata HOM05D004070 ORTHO05D004904 2.1e-28 131.3 295 31.2
BraA01t04203Z Brassica rapa HOM05D000053 ORTHO05D000035 2.7e-28 131.0 249 34.1
Atru.chr12.101 Acer truncatum HOM05D004070 ORTHO05D004904 1.3e-25 122.1 177 37.9
BolC1t05337H Brassica oleracea HOM05D000053 ORTHO05D000035 1.3e-25 122.1 251 33.1
BcaB07g33013 Brassica carinata HOM05D004070 ORTHO05D004904 1.7e-25 121.7 180 38.3
Sabra08G0054200 Salix brachista HOM05D004070 ORTHO05D004904 5.7e-18 96.7 230 29.1
BcaB03g16457 Brassica carinata HOM05D004070 ORTHO05D032257 8.3e-17 92.8 59 66.1
BcaB07g33265 Brassica carinata HOM05D004070 ORTHO05D032257 4.0e-11 73.9 48 62.5
BcaB07g33267 Brassica carinata HOM05D004070 ORTHO05D032257 4.0e-11 73.9 48 62.5
arahy.Tifrunner.gnm1.ann1.JYP4ZT Arachis hypogaea HOM05D004070 ORTHO05D004904 4.4e-10 70.5 143 29.4
Potri.008G073001 Populus trichocarpa HOM05D004070 ORTHO05D004904 5.7e-10 70.1 37 78.4
Potri.008G072901 Populus trichocarpa HOM05D004070 ORTHO05D004904 3.7e-09 67.4 142 28.9


User provided reference genes

Program Settings