Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc11g0005270 Simmondsia chinensis HOM05D003877 ORTHO05D004647 6.8e-298 1026.5 511 100.0
Hund13891 Selenicereus undatus HOM05D003877 ORTHO05D004647 3.4e-209 731.9 454 77.3
Hund15887 Selenicereus undatus HOM05D003877 ORTHO05D004647 5.5e-207 724.5 477 73.0
AUR62022935 Chenopodium quinoa HOM05D003877 ORTHO05D004647 1.8e-205 719.5 465 75.3
GSVIVG01032758001 Vitis vinifera HOM05D003877 ORTHO05D004647 3.3e-204 715.3 472 72.0
AUR62012296 Chenopodium quinoa HOM05D003877 ORTHO05D004647 4.4e-204 714.9 460 75.4
Dinv10589 Davidia involucrata HOM05D003877 ORTHO05D004647 1.4e-199 699.9 488 68.4
Duzib106G1591 Durio zibethinus HOM05D003877 ORTHO05D004647 1.9e-199 699.5 467 70.4
Thecc.10G011300 Theobroma cacao HOM05D003877 ORTHO05D004647 1.6e-198 696.4 468 69.9
TWI73G0349 Tripterygium wilfordii HOM05D003877 ORTHO05D004647 1.8e-197 693.0 464 70.7
EL10Ac2g04887 Beta vulgaris HOM05D003877 ORTHO05D004647 5.2e-197 691.4 469 71.9
Nn7g35848 Nelumbo nucifera HOM05D003877 ORTHO05D004647 1.1e-196 690.3 464 72.2
TAR623G0028 Trochodendron aralioides HOM05D003877 ORTHO05D004647 4.4e-196 688.3 466 71.9
TWI09G1304 Tripterygium wilfordii HOM05D003877 ORTHO05D004647 7.4e-196 687.6 453 71.1
Ciclev10031326m.g Citrus clementina HOM05D003877 ORTHO05D004647 2.2e-195 686.0 469 69.7
Aqoxy1G01313 Aquilegia oxysepala HOM05D003877 ORTHO05D004647 2.8e-195 685.6 451 71.8
Ca_15152_v3 Cicer arietinum L. HOM05D003877 ORTHO05D004647 2.8e-195 685.6 462 72.1
GSVIVG01032757001 Vitis vinifera HOM05D003877 ORTHO05D004647 1.1e-194 683.7 465 70.3
Glyma.18G024700 Glycine max HOM05D003877 ORTHO05D004647 1.8e-194 682.9 464 71.6
Manes.10G009000 Manihot esculenta HOM05D003877 ORTHO05D004647 4.1e-194 681.8 463 71.1
MD01G1157500 Malus domestica HOM05D003877 ORTHO05D004647 9.1e-194 680.6 468 69.0
Medtr3g071580 Medicago truncatula HOM05D003877 ORTHO05D004647 1.2e-193 680.2 465 70.8
Aqoxy2G01450 Aquilegia oxysepala HOM05D003877 ORTHO05D004647 4.5e-193 678.3 467 69.6
CSS0042673 Camellia sinensis var. sinensis HOM05D003877 ORTHO05D004647 4.5e-193 678.3 460 70.7
Gorai.012G079000 Gossypium raimondii HOM05D003877 ORTHO05D004647 1.0e-192 677.2 471 68.2
Gorai.010G195300 Gossypium raimondii HOM05D003877 ORTHO05D004647 1.3e-192 676.8 466 66.3
Cpa.g.sc19.135 Carica papaya HOM05D003877 ORTHO05D004647 2.9e-192 675.6 447 70.2
Gohir.D04G070400 Gossypium hirsutum HOM05D003877 ORTHO05D004647 3.8e-192 675.2 463 68.0
vmacro17690 Vaccinium macrocarpon HOM05D003877 ORTHO05D004647 3.8e-192 675.2 465 68.0
Glyma.05G080100 Glycine max HOM05D003877 ORTHO05D004647 1.1e-191 673.7 459 71.2
Actinidia29719 Actinidia chinensis HOM05D003877 ORTHO05D004647 1.9e-191 672.9 464 69.2
TAR633G0464 Trochodendron aralioides HOM05D003877 ORTHO05D004647 3.2e-191 672.2 470 68.9
Gohir.D06G167400 Gossypium hirsutum HOM05D003877 ORTHO05D004647 4.2e-191 671.8 466 65.9
Nitab4.5_0003391g0120 Nicotiana tabacum HOM05D003877 ORTHO05D004647 7.2e-191 671.0 468 68.2
Rhsim03G0146600 Rhododendron simsii HOM05D003877 ORTHO05D004647 1.2e-190 670.2 468 67.3
arahy.Tifrunner.gnm1.ann1.EHZF9M Arachis hypogaea HOM05D003877 ORTHO05D004647 1.6e-190 669.8 459 69.7
Gohir.A06G161800 Gossypium hirsutum HOM05D003877 ORTHO05D004647 1.6e-190 669.8 466 65.9
QL08p063706 Quercus lobata HOM05D003877 ORTHO05D004647 4.7e-190 668.3 482 67.0
RcHm_v2.0_Chr1g0370931 Rosa chinensis HOM05D003877 ORTHO05D004647 1.0e-189 667.2 475 66.9
Haze_17269 Corylus avellana HOM05D003877 ORTHO05D004647 2.3e-189 666.0 450 70.0
Lj6g0018000 Lotus japonicus HOM05D003877 ORTHO05D004647 4.0e-189 665.2 459 69.3
Ah.10g036260 Amaranthus hybridus HOM05D003877 ORTHO05D004647 5.2e-189 664.8 551 61.5
FAN01G0819 Fragaria x ananassa HOM05D003877 ORTHO05D004647 6.7e-189 664.5 473 66.6
FAN10G2809 Fragaria x ananassa HOM05D003877 ORTHO05D004647 6.7e-189 664.5 473 66.6
Manes.07G134500 Manihot esculenta HOM05D003877 ORTHO05D004647 6.7e-189 664.5 459 69.3
arahy.Tifrunner.gnm1.ann1.ZCM4RK Arachis hypogaea HOM05D003877 ORTHO05D004647 1.2e-188 663.7 464 69.0
FvH4_7g25060 Fragaria vesca HOM05D003877 ORTHO05D004647 2.0e-188 662.9 473 66.6
FAN06G1542 Fragaria x ananassa HOM05D003877 ORTHO05D004647 7.5e-188 661.0 473 66.4
Nitab4.5_0000789g0120 Nicotiana tabacum HOM05D003877 ORTHO05D004647 7.5e-188 661.0 462 68.2
arahy.Tifrunner.gnm1.ann1.EJG72V Arachis hypogaea HOM05D003877 ORTHO05D004647 1.3e-187 660.2 464 68.5
VMungo0540G0037 Vigna mungo HOM05D003877 ORTHO05D004647 1.7e-187 659.8 450 70.2
Eucgr.G03086 Eucalyptus grandis HOM05D003877 ORTHO05D004647 2.2e-187 659.4 464 66.8
Lalb_Chr08g0231521 Lupinus albus HOM05D003877 ORTHO05D004647 2.2e-187 659.4 440 70.9
Sopen05g031010 Solanum pennellii HOM05D003877 ORTHO05D004647 6.3e-187 657.9 500 64.4
FAN03G0426 Fragaria x ananassa HOM05D003877 ORTHO05D004647 8.2e-187 657.5 473 66.2
CiPaw.02G195400 Carya illinoinensis HOM05D003877 ORTHO05D004647 1.4e-186 656.8 462 68.2
Phvul.006G048800 Phaseolus vulgaris HOM05D003877 ORTHO05D004647 3.1e-186 655.6 471 69.0
CAN.G1268.9 Capsicum annuum HOM05D003877 ORTHO05D004647 7.0e-186 654.4 463 66.5
Lalb_Chr23g0277091 Lupinus albus HOM05D003877 ORTHO05D004647 9.1e-186 654.1 457 69.1
Prupe.2G255400 Prunus persica HOM05D003877 ORTHO05D004647 9.1e-186 654.1 464 67.9
Cc02_g06060 Coffea canephora HOM05D003877 ORTHO05D004647 1.2e-185 653.7 493 64.3
PGR142G4288 Punica granatum HOM05D003877 ORTHO05D004647 1.2e-185 653.7 454 68.3
Peaxi162Scf00284g00528 Petunia axillaris HOM05D003877 ORTHO05D004647 5.9e-185 651.4 462 65.8
CANSAT56G2949 Cannabis sativa HOM05D003877 ORTHO05D004647 7.7e-185 651.0 487 65.1
Lj1C785G15 Lonicera japonica HOM05D003877 ORTHO05D004647 1.0e-184 650.6 453 66.9
THA.LOC104810121 Tarenaya hassleriana HOM05D003877 ORTHO05D004647 1.3e-184 650.2 454 67.6
Potri.008G072600 Populus trichocarpa HOM05D003877 ORTHO05D004647 1.7e-184 649.8 464 67.7
Potri.010G184600 Populus trichocarpa HOM05D003877 ORTHO05D004647 2.9e-184 649.0 468 66.7
PGSC0003DMG400030038 Solanum tuberosum HOM05D003877 ORTHO05D004647 6.5e-184 647.9 481 63.8
DCAR_011841 Daucus carota HOM05D003877 ORTHO05D004647 1.5e-183 646.7 455 67.3
Solyc06g050990.3 Solanum lycopersicum HOM05D003877 ORTHO05D004647 1.2e-182 643.7 460 65.9
Gohir.A05G331800 Gossypium hirsutum HOM05D003877 ORTHO05D004647 3.6e-182 642.1 464 65.3
PSO801G0566 Papaver somniferum HOM05D003877 ORTHO05D004647 8.0e-182 641.0 466 65.0
Lsat_1_v5_gn_9_123441 Lactuca sativa HOM05D003877 ORTHO05D004647 1.8e-181 639.8 468 63.9
HanXRQChr08g0221971 Helianthus annuus HOM05D003877 ORTHO05D004647 2.3e-181 639.4 477 65.2
Sopen06g016790 Solanum pennellii HOM05D003877 ORTHO05D004647 2.3e-181 639.4 460 65.4
THA.LOC104824338 Tarenaya hassleriana HOM05D003877 ORTHO05D004647 6.8e-181 637.9 467 63.8
Dinv21772 Davidia involucrata HOM05D003877 ORTHO05D004647 8.8e-181 637.5 424 72.2
Peaxi162Scf01149g00319 Petunia axillaris HOM05D003877 ORTHO05D004647 8.8e-181 637.5 432 67.1
Sp1g08500 Schrenkiella parvula HOM05D003877 ORTHO05D004647 3.7e-179 632.1 460 65.0
Carub.0001s0925 Capsella rubella HOM05D003877 ORTHO05D004647 4.8e-179 631.7 460 65.0
SGA_v2.0_scaffold2G01375 Striga asiatica HOM05D003877 ORTHO05D004647 3.1e-178 629.0 459 65.4
ECA233G0637 Erigeron canadensis HOM05D003877 ORTHO05D004647 4.1e-178 628.6 441 66.9
AT1G09870 Arabidopsis thaliana HOM05D003877 ORTHO05D004647 9.1e-178 627.5 460 64.3
AL1G20470 Arabidopsis lyrata HOM05D003877 ORTHO05D004647 1.6e-177 626.7 460 64.6
Nitab4.5_0005049g0030 Nicotiana tabacum HOM05D003877 ORTHO05D004647 2.7e-177 625.9 488 62.3
Sabra10G0141800 Salix brachista HOM05D003877 ORTHO05D004647 4.5e-177 625.2 501 61.7
Nitab4.5_0000058g0130 Nicotiana tabacum HOM05D003877 ORTHO05D004647 5.9e-177 624.8 493 61.9
Thhalv10007485m.g Eutrema salsugineum HOM05D003877 ORTHO05D004647 2.2e-176 622.9 460 64.6
CARHR009900 Cardamine hirsuta HOM05D003877 ORTHO05D004647 5.0e-176 621.7 455 65.1
Aa31LG1G5020 Aethionema arabicum HOM05D003877 ORTHO05D004647 1.5e-175 620.2 457 63.7
Sed0008918 Sechium edule HOM05D003877 ORTHO05D004647 2.5e-175 619.4 465 64.5
BraA09t41875Z Brassica rapa HOM05D003877 ORTHO05D004647 5.5e-175 618.2 452 64.4
A09p65300 Brassica napus HOM05D003877 ORTHO05D004647 9.5e-175 617.5 452 64.4
BraA06t23872Z Brassica rapa HOM05D003877 ORTHO05D004647 2.1e-174 616.3 484 61.0
CsaV3_5G010390 Cucumis sativus L. HOM05D003877 ORTHO05D004647 2.1e-174 616.3 456 64.5
MSTRG.8927 Avicennia marina HOM05D003877 ORTHO05D004647 2.8e-174 615.9 457 65.2
BcaC07g41857 Brassica carinata HOM05D003877 ORTHO05D004647 3.6e-174 615.5 452 64.2
C08p49240 Brassica napus HOM05D003877 ORTHO05D004647 3.6e-174 615.5 452 64.2
BolC8t52459H Brassica oleracea HOM05D003877 ORTHO05D004647 3.6e-174 615.5 452 64.2
PSO349G0168 Papaver somniferum HOM05D003877 ORTHO05D004647 3.6e-174 615.5 445 65.2
ATR0068G102 Amborella trichopoda HOM05D003877 ORTHO05D004647 4.7e-174 615.1 473 61.9
SGA_v2.0_scaffold60G20966 Striga asiatica HOM05D003877 ORTHO05D004647 8.0e-174 614.4 499 60.5
Oeu056656.1 Olea europaea HOM05D003877 ORTHO05D004647 1.0e-173 614.0 462 63.2
CSS0004354 Camellia sinensis var. sinensis HOM05D003877 ORTHO05D004647 4.0e-173 612.1 403 71.5
MELO3C018375.2 Cucumis melo HOM05D003877 ORTHO05D004647 6.8e-173 611.3 464 63.4
SGA_v2.0_scaffold85G26692 Striga asiatica HOM05D003877 ORTHO05D004647 1.2e-172 610.5 490 61.0
Migut.F00639 Erythranthe guttata HOM05D003877 ORTHO05D004647 1.5e-172 610.1 463 64.6
CDE04G1002 Ceratophyllum demersum HOM05D003877 ORTHO05D004647 3.4e-172 609.0 469 63.3
vmacro10004 Vaccinium macrocarpon HOM05D003877 ORTHO05D004647 3.4e-172 609.0 552 55.1
PSO339G0345 Papaver somniferum HOM05D003877 ORTHO05D004647 7.5e-172 607.8 444 64.9
BolC5t29551H Brassica oleracea HOM05D003877 ORTHO05D004647 1.7e-171 606.7 466 62.0
A06p06580 Brassica napus HOM05D003877 ORTHO05D004647 2.8e-171 605.9 484 60.1
Sabra08G0053900 Salix brachista HOM05D003877 ORTHO05D004647 8.3e-171 604.4 524 58.0
C05p07990 Brassica napus HOM05D003877 ORTHO05D004647 5.4e-170 601.7 466 61.6
vmacro17691 Vaccinium macrocarpon HOM05D003877 ORTHO05D004647 7.0e-170 601.3 491 60.5
PGSC0003DMG400027120 Solanum tuberosum HOM05D003877 ORTHO05D004647 2.7e-169 599.4 430 67.2
Psat5g130920 Pisum sativum HOM05D003877 ORTHO05D004647 5.9e-169 598.2 463 63.1
BcaC05g24837 Brassica carinata HOM05D003877 ORTHO05D004647 7.8e-169 597.8 441 63.5
ClCG07G004500 Citrullus lanatus HOM05D003877 ORTHO05D004647 2.3e-168 596.3 436 63.3
Os03g0818100 Oryza sativa ssp. japonica HOM05D003877 ORTHO05D004647 4.3e-167 592.0 489 59.3
CSS0043221 Camellia sinensis var. sinensis HOM05D003877 ORTHO05D004647 5.6e-167 591.7 378 72.5
CSS0044757 Camellia sinensis var. sinensis HOM05D003877 ORTHO05D004647 5.6e-167 591.7 378 72.5
Zm00001eb062330 Zea mays HOM05D003877 ORTHO05D004647 1.4e-165 587.0 470 61.1
ATR0681G014 Amborella trichopoda HOM05D003877 ORTHO05D004647 1.7e-160 570.1 435 64.6
Sed0009338 Sechium edule HOM05D003877 ORTHO05D004647 1.7e-160 570.1 478 59.0
Prupe.6G130900 Prunus persica HOM05D003877 ORTHO05D004647 3.0e-160 569.3 468 61.1
SalBow3G1521 Salvia bowleyana HOM05D003877 ORTHO05D004647 5.6e-159 565.1 603 49.8
Thhalv10002208m.g Eutrema salsugineum HOM05D003877 ORTHO05D004647 2.8e-158 562.8 402 65.2
Atru.chr12.96 Acer truncatum HOM05D003877 ORTHO05D004647 1.0e-157 560.8 428 65.2
Lsat_1_v5_gn_9_60880 Lactuca sativa HOM05D003877 ORTHO05D004647 1.4e-157 560.5 439 60.8
MELO3C034227.2 Cucumis melo HOM05D003877 ORTHO05D004647 2.3e-157 559.7 468 58.8
CsaV3_5G010430 Cucumis sativus L. HOM05D003877 ORTHO05D004647 6.8e-157 558.1 471 59.0
unitig_16.g32857 Utricularia gibba HOM05D003877 ORTHO05D004647 5.4e-138 495.4 504 50.6
CsaV3_5G010400 Cucumis sativus L. HOM05D003877 ORTHO05D004647 1.3e-136 490.7 456 53.9
Mapoly0029s0098 Marchantia polymorpha HOM05D003877 ORTHO05D004647 1.4e-133 480.7 474 49.4
CDE06G2086 Ceratophyllum demersum HOM05D003877 ORTHO05D004647 5.2e-133 478.8 448 54.7
Pp3c24_6790 Physcomitrium patens HOM05D003877 ORTHO05D004647 1.9e-130 470.3 460 50.9
CSS0003433 Camellia sinensis var. sinensis HOM05D003877 ORTHO05D004647 2.4e-130 469.9 400 59.5
Solyc05g052480.4 Solanum lycopersicum HOM05D003877 ORTHO05D004647 1.9e-127 460.3 346 66.8
SMO271G0017 Selaginella moellendorffii HOM05D003877 ORTHO05D004647 3.4e-124 449.5 467 48.4
Pp3c8_15050 Physcomitrium patens HOM05D003877 ORTHO05D004647 6.0e-121 438.7 404 52.5
AagrBONN_evm.TU.Sc2ySwM_344.2788 Anthoceros agrestis HOM05D003877 ORTHO05D004647 3.3e-111 406.4 510 44.7
HPP92_019712 Vanilla planifolia HOM05D003877 ORTHO05D004647 1.4e-109 401.0 307 62.5
SalBow3G0419 Salvia bowleyana HOM05D003877 ORTHO05D004647 1.2e-97 361.3 264 67.8
unitig_8.g4098 Utricularia gibba HOM05D003877 ORTHO05D004647 2.5e-82 310.5 296 52.0
SalBow3G3178 Salvia bowleyana HOM05D003877 ORTHO05D004647 9.7e-71 271.9 184 65.2
CsaV3_2G012250 Cucumis sativus L. HOM05D003877 ORTHO05D004647 1.7e-62 244.6 194 59.8
SGA_v2.0_scaffold85G26702 Striga asiatica HOM05D003877 ORTHO05D004647 3.1e-53 213.8 213 54.0
SEGI_29662 Sequoiadendron giganteum HOM05D003877 ORTHO05D004647 2.0e-47 194.5 159 58.5
CBR_g38028 Chara braunii HOM05D003877 ORTHO05D004647 2.3e-43 181.0 327 34.9
TPR.G10202 Trifolium pratense HOM05D003877 ORTHO05D004647 4.9e-38 163.3 106 70.8
Manes.09G077219 Manihot esculenta HOM05D003877 ORTHO05D004647 1.4e-37 161.8 100 77.0
Cre13.g568600 Chlamydomonas reinhardtii HOM05D003877 ORTHO05D004647 5.0e-35 153.3 438 29.5
TAR626G1532 Trochodendron aralioides HOM05D003877 ORTHO05D004647 2.0e-31 141.4 149 51.0
Lsat_1_v5_gn_5_175980 Lactuca sativa HOM05D003877 ORTHO05D004647 4.9e-30 136.7 113 57.5
Manes.18G042850 Manihot esculenta HOM05D003877 ORTHO05D004647 9.2e-29 132.5 112 61.6
Manes.06G044901 Manihot esculenta HOM05D003877 ORTHO05D004647 1.2e-28 132.1 116 61.2
CsaV3_2G012240 Cucumis sativus L. HOM05D003877 ORTHO05D004647 1.7e-27 128.3 86 69.8
SEGI_27537 Sequoiadendron giganteum HOM05D003877 ORTHO05D004647 4.3e-26 123.6 78 70.5
unitig_8.g4097 Utricularia gibba HOM05D003877 ORTHO05D004647 6.8e-24 116.3 99 54.5
Nn5g28638 Nelumbo nucifera HOM05D003877 ORTHO05D004647 1.1e-21 109.0 71 67.6
TPR.G5082 Trifolium pratense HOM05D003877 ORTHO05D004647 1.3e-19 102.1 71 63.4
Nn7g36267 Nelumbo nucifera HOM05D003877 ORTHO05D004647 2.5e-18 97.8 60 71.7
CSS0015783 Camellia sinensis var. sinensis HOM05D003877 ORTHO05D004647 1.2e-15 89.0 110 50.0
Carub.0003s0920 Capsella rubella HOM05D000468 ORTHO05D114682 2.9e-14 84.3 67 65.7
Manes.15G188901 Manihot esculenta HOM05D003877 ORTHO05D004647 4.3e-10 70.5 47 70.2
TPR.G5048 Trifolium pratense HOM05D003877 ORTHO05D004647 1.4e-08 65.5 45 64.4
MELO3C018376.2 Cucumis melo HOM05D003877 ORTHO05D004647 5.3e-08 63.5 49 59.2
TPR.G30156 Trifolium pratense HOM05D003877 ORTHO05D004647 9.0e-08 62.8 80 47.5
CSS0003201 Camellia sinensis var. sinensis HOM05D003877 ORTHO05D004647 2.0e-07 61.6 60 50.0
MELO3C033083.2 Cucumis melo HOM05D003877 ORTHO05D034944 1.3e-06 58.9 39 66.7
Lsat_1_v5_gn_6_23680 Lactuca sativa HOM05D001176 ORTHO05D014361 6.4e-06 56.6 59 52.5


User provided reference genes

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