Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc11g0004790 Simmondsia chinensis HOM05D004935 ORTHO05D005676 3.9e-107 391.7 235 100.0
Sc11g0004530 Simmondsia chinensis HOM05D004935 ORTHO05D005676 3.6e-89 332.0 235 89.8
Hund13074 Selenicereus undatus HOM05D004935 ORTHO05D005676 1.7e-54 216.9 242 55.8
Hma1.2p1_0034F.1_g021280 Hydrangea macrophylla HOM05D004935 ORTHO05D005676 1.8e-48 196.8 231 53.2
Duzib138G1863 Durio zibethinus HOM05D004935 ORTHO05D005676 4.5e-47 192.2 203 56.2
Potri.004G082300 Populus trichocarpa HOM05D004935 ORTHO05D005676 1.7e-46 190.3 191 58.1
Thecc.04G001700 Theobroma cacao HOM05D004935 ORTHO05D005676 2.2e-46 189.9 195 57.4
FAN28G0886 Fragaria x ananassa HOM05D004935 ORTHO05D005676 1.5e-45 187.2 194 56.7
FvH4_1g28640 Fragaria vesca HOM05D004935 ORTHO05D005676 2.5e-45 186.4 194 56.7
CSS0027542 Camellia sinensis var. sinensis HOM05D004935 ORTHO05D005676 1.6e-44 183.7 198 54.0
Rhsim10G0182800 Rhododendron simsii HOM05D004935 ORTHO05D005676 2.1e-44 183.3 224 50.4
Ciclev10029179m.g Citrus clementina HOM05D004935 ORTHO05D005676 4.7e-44 182.2 230 52.6
Dinv19063 Davidia involucrata HOM05D004935 ORTHO05D005676 6.1e-44 181.8 180 55.6
Duzib133G0236 Durio zibethinus HOM05D004935 ORTHO05D005676 6.1e-44 181.8 192 55.2
MD09G1265200 Malus domestica HOM05D004935 ORTHO05D005676 1.4e-43 180.6 227 51.5
Prupe.3G163400 Prunus persica HOM05D004935 ORTHO05D005676 1.8e-43 180.3 227 50.7
RcHm_v2.0_Chr3g0492651 Rosa chinensis HOM05D004935 ORTHO05D005676 1.8e-43 180.3 194 56.7
Actinidia01601 Actinidia chinensis HOM05D004935 ORTHO05D005676 2.3e-43 179.9 193 54.4
Nitab4.5_0002465g0010 Nicotiana tabacum HOM05D004935 ORTHO05D005676 2.3e-43 179.9 239 48.5
Nitab4.5_0001088g0190 Nicotiana tabacum HOM05D004935 ORTHO05D005676 4.0e-43 179.1 237 48.9
vmacro20490 Vaccinium macrocarpon HOM05D004935 ORTHO05D005676 4.0e-43 179.1 218 50.9
Eucgr.J01625 Eucalyptus grandis HOM05D004935 ORTHO05D005676 5.2e-43 178.7 200 51.0
Oeu032311.1 Olea europaea HOM05D004935 ORTHO05D005676 6.7e-43 178.3 209 51.2
Sabra04G0054800 Salix brachista HOM05D004935 ORTHO05D005676 1.5e-42 177.2 212 49.1
CANSAT78G0803 Cannabis sativa HOM05D004935 ORTHO05D005676 2.0e-42 176.8 222 52.3
CiPaw.03G075500 Carya illinoinensis HOM05D004935 ORTHO05D005676 2.0e-42 176.8 227 49.8
Lj4A255T23 Lonicera japonica HOM05D004935 ORTHO05D005676 2.0e-42 176.8 217 49.8
Aqoxy3G04045 Aquilegia oxysepala HOM05D004935 ORTHO05D005676 2.6e-42 176.4 189 54.5
MD17G1261400 Malus domestica HOM05D004935 ORTHO05D005676 7.5e-42 174.9 227 51.1
Glyma.18G042900 Glycine max HOM05D004935 ORTHO05D005676 1.7e-41 173.7 195 54.4
Manes.02G079800 Manihot esculenta HOM05D004935 ORTHO05D005676 2.2e-41 173.3 192 55.2
Dinv28224 Davidia involucrata HOM05D004935 ORTHO05D005676 3.7e-41 172.6 233 47.2
Oeu029081.1 Olea europaea HOM05D004935 ORTHO05D005676 4.8e-41 172.2 208 53.8
TPR.G12527 Trifolium pratense HOM05D004935 ORTHO05D005676 4.8e-41 172.2 187 52.9
SGA_v2.0_scaffold45G17134 Striga asiatica HOM05D004935 ORTHO05D005676 6.3e-41 171.8 263 43.3
CiPaw.04G048500 Carya illinoinensis HOM05D004935 ORTHO05D005676 8.2e-41 171.4 226 49.1
Nn4g24526 Nelumbo nucifera HOM05D004935 ORTHO05D005676 8.2e-41 171.4 234 49.6
Medtr5g091900 Medicago truncatula HOM05D004935 ORTHO05D005676 1.4e-40 170.6 210 50.5
Actinidia17180 Actinidia chinensis HOM05D004935 ORTHO05D005676 2.4e-40 169.9 191 51.8
Migut.K01110 Erythranthe guttata HOM05D004935 ORTHO05D005676 3.1e-40 169.5 221 48.4
Gohir.D07G078500 Gossypium hirsutum HOM05D004935 ORTHO05D005676 3.1e-40 169.5 190 54.2
Hma1.2p1_0158F.1_g069850 Hydrangea macrophylla HOM05D004935 ORTHO05D005676 3.1e-40 169.5 222 46.8
Lj6g0018793 Lotus japonicus HOM05D004935 ORTHO05D005676 3.1e-40 169.5 195 52.3
FAN26G0615 Fragaria x ananassa HOM05D004935 ORTHO05D005676 4.1e-40 169.1 212 51.4
COL.COLO4_19777 Corchorus olitorius HOM05D004935 ORTHO05D005676 5.3e-40 168.7 202 52.0
Phvul.001G228000 Phaseolus vulgaris HOM05D004935 ORTHO05D005676 5.3e-40 168.7 194 51.0
Manes.01G121800 Manihot esculenta HOM05D004935 ORTHO05D005676 7.0e-40 168.3 205 52.7
arahy.Tifrunner.gnm1.ann1.5XP26J Arachis hypogaea HOM05D004935 ORTHO05D005676 9.1e-40 167.9 192 50.5
Cc07_g13020 Coffea canephora HOM05D004935 ORTHO05D005676 1.2e-39 167.5 192 63.0
Gohir.A07G073800 Gossypium hirsutum HOM05D004935 ORTHO05D005676 1.2e-39 167.5 190 51.1
Gohir.A11G169300 Gossypium hirsutum HOM05D004935 ORTHO05D005676 1.6e-39 167.2 190 53.2
Peaxi162Scf00078g00178 Petunia axillaris HOM05D004935 ORTHO05D005676 1.6e-39 167.2 239 46.4
Actinidia28792 Actinidia chinensis HOM05D004935 ORTHO05D005676 2.0e-39 166.8 200 49.5
Glyma.11G213800 Glycine max HOM05D004935 ORTHO05D005676 3.5e-39 166.0 195 51.3
Gorai.001G082900 Gossypium raimondii HOM05D004935 ORTHO05D005676 1.0e-38 164.5 192 53.6
Gorai.007G188100 Gossypium raimondii HOM05D004935 ORTHO05D005676 1.0e-38 164.5 190 52.6
PGSC0003DMG400013258 Solanum tuberosum HOM05D004935 ORTHO05D005676 1.0e-38 164.5 232 45.7
Ca_06292_v3 Cicer arietinum L. HOM05D004935 ORTHO05D005676 1.7e-38 163.7 196 50.5
Gohir.D11G175500 Gossypium hirsutum HOM05D004935 ORTHO05D005676 1.7e-38 163.7 190 52.6
Sopen11g006600 Solanum pennellii HOM05D004935 ORTHO05D005676 1.7e-38 163.7 233 46.8
arahy.Tifrunner.gnm1.ann1.63R0A2 Arachis hypogaea HOM05D004935 ORTHO05D005676 2.2e-38 163.3 195 54.9
Solyc11g011760.3 Solanum lycopersicum HOM05D004935 ORTHO05D005676 2.9e-38 162.9 234 47.0
VMungo1383G0526 Vigna mungo HOM05D004935 ORTHO05D005676 3.8e-38 162.5 190 51.6
arahy.Tifrunner.gnm1.ann1.8KIW52 Arachis hypogaea HOM05D004935 ORTHO05D005676 5.0e-38 162.2 195 49.7
SalBow3G4475 Salvia bowleyana HOM05D004935 ORTHO05D005676 6.5e-38 161.8 201 49.3
TAR622G0462 Trochodendron aralioides HOM05D004935 ORTHO05D005676 6.5e-38 161.8 232 45.3
Atru.chr1.1949 Acer truncatum HOM05D004935 ORTHO05D005676 8.5e-38 161.4 163 57.7
Lalb_Chr10g0104161 Lupinus albus HOM05D004935 ORTHO05D005676 1.1e-37 161.0 197 49.7
Lalb_Chr17g0345951 Lupinus albus HOM05D004935 ORTHO05D005676 1.5e-37 160.6 194 50.0
LjContig00141g0002036 Lotus japonicus HOM05D004935 ORTHO05D005676 3.2e-37 159.5 223 48.4
QL02p059972 Quercus lobata HOM05D004935 ORTHO05D005676 3.2e-37 159.5 234 45.7
Cfa007772 Carpinus fangiana HOM05D004935 ORTHO05D005676 3.6e-36 156.0 291 41.9
MELO3C025122.2 Cucumis melo HOM05D004935 ORTHO05D005676 3.6e-36 156.0 227 42.7
Lalb_Chr18g0053611 Lupinus albus HOM05D004935 ORTHO05D005676 8.0e-36 154.8 195 47.2
CsaV3_5G024270 Cucumis sativus L. HOM05D004935 ORTHO05D005676 1.0e-35 154.5 227 42.3
MSTRG.3688 Avicennia marina HOM05D004935 ORTHO05D005676 1.4e-35 154.1 225 45.8
Lj2A514G44 Lonicera japonica HOM05D004935 ORTHO05D005676 3.0e-35 152.9 253 41.1
THA.LOC104820912 Tarenaya hassleriana HOM05D004935 ORTHO05D005676 3.0e-35 152.9 219 47.5
PSO170G5471 Papaver somniferum HOM05D004935 ORTHO05D005676 6.8e-35 151.8 219 44.3
EL10Ac2g03209 Beta vulgaris HOM05D004935 ORTHO05D005676 8.8e-35 151.4 165 60.0
MBI13_g35399_MAGBIO Magnolia biondii HOM05D004935 ORTHO05D005676 8.8e-35 151.4 225 44.0
TWI53G1040 Tripterygium wilfordii HOM05D004935 ORTHO05D005676 8.8e-35 151.4 194 50.5
PGR042G3611 Punica granatum HOM05D004935 ORTHO05D005676 4.4e-34 149.1 211 44.5
ClCG01G008740 Citrullus lanatus HOM05D004935 ORTHO05D005676 5.7e-34 148.7 227 42.7
AL6G27510 Arabidopsis lyrata HOM05D004935 ORTHO05D005676 7.5e-34 148.3 192 49.0
unitig_748.g8451 Utricularia gibba HOM05D004935 ORTHO05D005676 7.5e-34 148.3 217 45.6
HPP92_017642 Vanilla planifolia HOM05D004935 ORTHO05D005676 1.3e-33 147.5 188 48.4
Zm00001eb179280 Zea mays HOM05D004935 ORTHO05D005676 2.8e-33 146.4 223 42.6
PSO407G0171 Papaver somniferum HOM05D004935 ORTHO05D005676 3.7e-33 146.0 231 42.4
Psat2g014520 Pisum sativum HOM05D004935 ORTHO05D005676 3.7e-33 146.0 182 52.2
Zm00001eb041900 Zea mays HOM05D004935 ORTHO05D005676 4.8e-33 145.6 223 42.2
AT5G16550 Arabidopsis thaliana HOM05D004935 ORTHO05D005676 1.4e-32 144.1 217 45.2
BcaC03g18499 Brassica carinata HOM05D004935 ORTHO05D005676 4.1e-32 142.5 223 47.1
Medtr5g077280 Medicago truncatula HOM05D004935 ORTHO05D005676 4.1e-32 142.5 195 46.7
Psat2g044600 Pisum sativum HOM05D004935 ORTHO05D005676 4.1e-32 142.5 215 44.2
A02p03620 Brassica napus HOM05D004935 ORTHO05D005676 5.4e-32 142.1 216 48.6
A10p22660 Brassica napus HOM05D004935 ORTHO05D005676 1.2e-31 141.0 183 51.9
BraA10t44327Z Brassica rapa HOM05D004935 ORTHO05D005676 1.2e-31 141.0 183 51.9
Sp6g27610 Schrenkiella parvula HOM05D004935 ORTHO05D005676 1.6e-31 140.6 193 59.6
BcaC03g18497 Brassica carinata HOM05D004935 ORTHO05D005676 2.0e-31 140.2 190 56.8
C02p08410 Brassica napus HOM05D004935 ORTHO05D005676 2.0e-31 140.2 190 56.8
BolC2t06759H Brassica oleracea HOM05D004935 ORTHO05D005676 2.0e-31 140.2 190 56.8
BolC3t13402H Brassica oleracea HOM05D004935 ORTHO05D005676 2.0e-31 140.2 221 42.5
TPR.G9990 Trifolium pratense HOM05D004935 ORTHO05D005676 2.0e-31 140.2 223 43.0
Carub.0006s1475 Capsella rubella HOM05D004935 ORTHO05D005676 2.7e-31 139.8 192 45.8
BcaB08g36840 Brassica carinata HOM05D004935 ORTHO05D005676 1.0e-30 137.9 218 45.0
C03p09070 Brassica napus HOM05D004935 ORTHO05D005676 1.3e-30 137.5 221 42.1
arahy.Tifrunner.gnm1.ann1.PKWW5Q Arachis hypogaea HOM05D004935 ORTHO05D005676 1.7e-30 137.1 163 52.1
Thhalv10014473m.g Eutrema salsugineum HOM05D004935 ORTHO05D005676 3.8e-30 136.0 192 56.2
BraA02t05331Z Brassica rapa HOM05D004935 ORTHO05D005676 6.5e-30 135.2 216 46.8
Glyma.02G242200 Glycine max HOM05D004935 ORTHO05D005676 8.5e-30 134.8 218 42.2
Phvul.008G238800 Phaseolus vulgaris HOM05D004935 ORTHO05D005676 8.5e-30 134.8 195 46.2
TAR629G3076 Trochodendron aralioides HOM05D004935 ORTHO05D005676 1.5e-29 134.0 235 50.2
C09p60610 Brassica napus HOM05D004935 ORTHO05D005676 1.9e-29 133.7 171 50.9
BolC9t58894H Brassica oleracea HOM05D004935 ORTHO05D005676 1.9e-29 133.7 171 50.9
Lsat_1_v5_gn_8_111520 Lactuca sativa HOM05D004935 ORTHO05D005676 1.9e-29 133.7 221 43.0
BcaB01g04976 Brassica carinata HOM05D004935 ORTHO05D005676 9.5e-29 131.3 175 48.0
BcaC04g18869 Brassica carinata HOM05D004935 ORTHO05D005676 4.7e-28 129.0 233 41.2
CDE11G1189 Ceratophyllum demersum HOM05D004935 ORTHO05D005676 1.4e-27 127.5 186 43.5
BraA03t10111Z Brassica rapa HOM05D000423 ORTHO05D005676 2.3e-27 126.7 169 50.3
VMungo0647G1435 Vigna mungo HOM05D004935 ORTHO05D005676 2.3e-27 126.7 223 41.3
Aa31LG11G13100 Aethionema arabicum HOM05D004935 ORTHO05D005676 5.2e-27 125.6 185 54.1
A03p07850 Brassica napus HOM05D004935 ORTHO05D005676 6.3e-25 118.6 130 56.9
CDE05G2820 Ceratophyllum demersum HOM05D004935 ORTHO05D005676 2.4e-24 116.7 184 42.9
Oeu014715.1 Olea europaea HOM05D004935 ORTHO05D005676 4.1e-24 115.9 130 51.5
HanXRQChr15g0489811 Helianthus annuus HOM05D004935 ORTHO05D005676 9.2e-24 114.8 216 44.9
GSVIVG01026318001 Vitis vinifera HOM05D004935 ORTHO05D005676 3.5e-23 112.8 105 64.8
AL3G36180 Arabidopsis lyrata HOM05D004935 ORTHO05D005676 1.6e-20 104.0 118 55.1
Sed0000771 Sechium edule HOM05D004935 ORTHO05D005676 2.8e-20 103.2 228 35.1
ECA246G1322 Erigeron canadensis HOM05D004935 ORTHO05D005676 1.8e-19 100.5 122 50.8
AL92U10070 Arabidopsis lyrata HOM05D004935 ORTHO05D005676 6.8e-19 98.6 147 49.0
Haze_14300 Corylus avellana HOM05D004935 ORTHO05D005676 2.9e-17 93.2 278 35.6
AagrBONN_evm.TU.Sc2ySwM_117.2252 Anthoceros agrestis HOM05D004935 ORTHO05D005676 1.1e-16 91.3 144 49.3
Mapoly0035s0070 Marchantia polymorpha HOM05D004935 ORTHO05D005676 4.6e-15 85.9 186 33.9
AL6G14310 Arabidopsis lyrata HOM05D000097 ORTHO05D005676 1.3e-14 84.3 112 52.7
Peaxi162Scf00085g00527 Petunia axillaris HOM05D004935 ORTHO05D005676 4.3e-13 79.3 91 46.2
DCAR_003418 Daucus carota HOM05D004935 ORTHO05D005676 1.2e-12 77.8 100 44.0
FAN19G0113 Fragaria x ananassa HOM05D004935 ORTHO05D005676 8.0e-12 75.1 74 55.4
Zm00001eb099130 Zea mays HOM05D004935 ORTHO05D005676 1.0e-11 74.7 89 49.4
CARHR196690 Cardamine hirsuta HOM05D004935 ORTHO05D005676 6.8e-11 72.0 97 49.5
Pp3c25_6290 Physcomitrium patens HOM05D004935 ORTHO05D005676 2.6e-10 70.1 172 31.4
CARHR196680 Cardamine hirsuta HOM05D004935 ORTHO05D005676 6.4e-09 65.5 61 63.9
EL10Ac2g03210 Beta vulgaris HOM05D004935 ORTHO05D005676 1.1e-08 64.7 49 61.2
Cpa.g.sc178.1 Carica papaya HOM05D004935 ORTHO05D005676 1.9e-08 63.9 105 39.0
Pp3c6_9570 Physcomitrium patens HOM05D004935 ORTHO05D005676 2.4e-08 63.5 138 29.0
Medtr5g077270 Medicago truncatula HOM05D007893 ORTHO05D010042 1.0e-06 58.2 82 43.9
CSS0034638 Camellia sinensis var. sinensis HOM05D004935 ORTHO05D005676 8.6e-06 55.1 44 52.3


User provided reference genes

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