Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc11g0004740 Simmondsia chinensis HOM05D006982 ORTHO05D008909 1.1e-89 333.2 163 100.0
Hma1.2p1_1813F.1_g303760 Hydrangea macrophylla HOM05D006982 ORTHO05D008909 4.1e-71 271.6 154 83.1
Potri.017G090400 Populus trichocarpa HOM05D006982 ORTHO05D008909 9.0e-71 270.4 162 79.6
Hma1.2p1_3044F.1_g332060 Hydrangea macrophylla HOM05D006982 ORTHO05D008909 1.2e-70 270.0 154 82.5
Dinv11484 Davidia involucrata HOM05D006982 ORTHO05D008909 2.0e-70 269.2 151 84.1
Atru.chr8.390 Acer truncatum HOM05D006982 ORTHO05D008909 3.4e-70 268.5 151 84.1
GSVIVG01011493001 Vitis vinifera HOM05D006982 ORTHO05D008909 2.2e-69 265.8 157 79.0
Manes.01G098700 Manihot esculenta HOM05D006982 ORTHO05D008909 1.1e-68 263.5 156 78.2
VMungo0464G0061 Vigna mungo HOM05D006982 ORTHO05D008909 1.1e-68 263.5 158 79.7
Rhsim10G0045300 Rhododendron simsii HOM05D006982 ORTHO05D008909 1.4e-68 263.1 149 83.9
Lj2g0023544 Lotus japonicus HOM05D006982 ORTHO05D008909 2.5e-68 262.3 159 77.4
QL02p039506 Quercus lobata HOM05D006982 ORTHO05D008909 2.5e-68 262.3 157 80.3
CiPaw.03G091200 Carya illinoinensis HOM05D006982 ORTHO05D008909 4.2e-68 261.5 158 79.1
Haze_14468 Corylus avellana HOM05D006982 ORTHO05D008909 5.5e-68 261.2 158 77.8
Nn4g23351 Nelumbo nucifera HOM05D006982 ORTHO05D008909 9.4e-68 260.4 163 74.2
Glyma.13G058700 Glycine max HOM05D006982 ORTHO05D008909 1.2e-67 260.0 159 77.4
Duzib187G0332 Durio zibethinus HOM05D006982 ORTHO05D008909 2.7e-67 258.8 156 76.9
Phvul.004G033900 Phaseolus vulgaris HOM05D006982 ORTHO05D008909 2.7e-67 258.8 158 78.5
A06p40000 Brassica napus HOM05D006982 ORTHO05D008909 3.6e-67 258.5 151 80.8
TPR.G26172 Trifolium pratense HOM05D006982 ORTHO05D008909 3.6e-67 258.5 158 77.2
Eucgr.I01983 Eucalyptus grandis HOM05D006982 ORTHO05D008909 6.1e-67 257.7 156 77.6
Aa31LG2G3980 Aethionema arabicum HOM05D006982 ORTHO05D008909 1.4e-66 256.5 151 78.8
MELO3C014935.2 Cucumis melo HOM05D006982 ORTHO05D008909 2.3e-66 255.8 157 75.8
Thhalv10005014m.g Eutrema salsugineum HOM05D006982 ORTHO05D008909 2.3e-66 255.8 153 77.1
Psat1g070160 Pisum sativum HOM05D006982 ORTHO05D008909 2.3e-66 255.8 156 76.3
TWI60G0050 Tripterygium wilfordii HOM05D006982 ORTHO05D008909 2.3e-66 255.8 158 78.5
PGR004G0184 Punica granatum HOM05D006982 ORTHO05D008909 3.0e-66 255.4 160 74.4
CsaV3_3G026330 Cucumis sativus L. HOM05D006982 ORTHO05D008909 3.9e-66 255.0 157 75.8
Thecc.04G091200 Theobroma cacao HOM05D006982 ORTHO05D008909 3.9e-66 255.0 156 76.9
Carub.0005s0799 Capsella rubella HOM05D006982 ORTHO05D008909 5.1e-66 254.6 153 77.8
Sp2g17880 Schrenkiella parvula HOM05D006982 ORTHO05D008909 5.1e-66 254.6 153 77.8
Sed0004734 Sechium edule HOM05D006982 ORTHO05D008909 5.1e-66 254.6 155 76.8
AT3G29280 Arabidopsis thaliana HOM05D006982 ORTHO05D008909 6.7e-66 254.2 151 78.8
A02p36510 Brassica napus HOM05D006982 ORTHO05D008909 8.8e-66 253.8 149 79.2
BraA02t08647Z Brassica rapa HOM05D006982 ORTHO05D008909 8.8e-66 253.8 149 79.2
CARHR292480 Cardamine hirsuta HOM05D006982 ORTHO05D008909 1.1e-65 253.4 153 77.1
CANSAT64G0008 Cannabis sativa HOM05D006982 ORTHO05D008909 1.5e-65 253.1 156 76.3
Glyma.19G027800 Glycine max HOM05D006982 ORTHO05D008909 1.5e-65 253.1 156 76.9
BcaB07g30087 Brassica carinata HOM05D006982 ORTHO05D008909 2.0e-65 252.7 153 77.1
C02p55480 Brassica napus HOM05D006982 ORTHO05D008909 2.5e-65 252.3 149 79.9
BolC2t11604H Brassica oleracea HOM05D006982 ORTHO05D008909 2.5e-65 252.3 149 79.9
BolC7t44339H Brassica oleracea HOM05D006982 ORTHO05D008909 3.3e-65 251.9 153 77.1
THA.LOC104805498 Tarenaya hassleriana HOM05D006982 ORTHO05D008909 3.3e-65 251.9 155 74.2
vmacro05662 Vaccinium macrocarpon HOM05D006982 ORTHO05D008909 3.3e-65 251.9 153 79.1
BcaC03g17569 Brassica carinata HOM05D006982 ORTHO05D008909 4.3e-65 251.5 149 78.5
AL5G19280 Arabidopsis lyrata HOM05D006982 ORTHO05D008909 5.7e-65 251.1 153 75.8
EL10Ac2g03084 Beta vulgaris HOM05D006982 ORTHO05D008909 7.4e-65 250.8 161 75.2
Ciclev10012958m.g Citrus clementina HOM05D006982 ORTHO05D008909 7.4e-65 250.8 155 76.8
Cc07_g04010 Coffea canephora HOM05D006982 ORTHO05D008909 2.8e-64 248.8 158 74.1
SGA_v2.0_scaffold4G02409 Striga asiatica HOM05D006982 ORTHO05D008909 3.7e-64 248.4 154 72.7
AUR62042567 Chenopodium quinoa HOM05D006982 ORTHO05D008909 6.3e-64 247.7 158 75.3
HanXRQChr07g0199461 Helianthus annuus HOM05D006982 ORTHO05D008909 8.2e-64 247.3 158 73.4
TAR629G3328 Trochodendron aralioides HOM05D006982 ORTHO05D008909 8.2e-64 247.3 158 72.2
MSTRG.3019 Avicennia marina HOM05D006982 ORTHO05D008909 1.4e-63 246.5 158 72.2
SalBow1G5236 Salvia bowleyana HOM05D006982 ORTHO05D008909 1.4e-63 246.5 154 73.4
Gorai.006G012000 Gossypium raimondii HOM05D006982 ORTHO05D008909 4.1e-63 245.0 156 73.7
Nitab4.5_0005196g0040 Nicotiana tabacum HOM05D006982 ORTHO05D008909 4.1e-63 245.0 158 73.4
Lalb_Chr02g0159031 Lupinus albus HOM05D006982 ORTHO05D008909 5.3e-63 244.6 161 71.4
ClCG05G014130 Citrullus lanatus HOM05D006982 ORTHO05D008909 9.1e-63 243.8 157 72.6
Gohir.D09G010400 Gossypium hirsutum HOM05D006982 ORTHO05D008909 9.1e-63 243.8 156 73.1
Aqoxy3G00454 Aquilegia oxysepala HOM05D006982 ORTHO05D008909 1.5e-62 243.0 157 73.2
RcHm_v2.0_Chr2g0166491 Rosa chinensis HOM05D006982 ORTHO05D008909 1.5e-62 243.0 156 75.0
Sabra17G0079600 Salix brachista HOM05D006982 ORTHO05D008909 1.5e-62 243.0 198 61.6
ECA238G0675 Erigeron canadensis HOM05D006982 ORTHO05D008909 2.0e-62 242.7 158 71.5
Migut.H00650 Erythranthe guttata HOM05D006982 ORTHO05D008909 2.0e-62 242.7 152 75.0
FvH4_6g47420 Fragaria vesca HOM05D006982 ORTHO05D008909 4.5e-62 241.5 156 73.7
FAN14G3321 Fragaria x ananassa HOM05D006982 ORTHO05D008909 4.5e-62 241.5 156 73.7
Nitab4.5_0001637g0060 Nicotiana tabacum HOM05D006982 ORTHO05D008909 5.9e-62 241.1 158 72.2
Lsat_1_v5_gn_2_87800 Lactuca sativa HOM05D006982 ORTHO05D008909 7.7e-62 240.7 154 72.1
MD09G1061600 Malus domestica HOM05D006982 ORTHO05D008909 7.7e-62 240.7 156 72.4
RcHm_v2.0_Chr2g0166501 Rosa chinensis HOM05D006982 ORTHO05D008909 7.7e-62 240.7 156 73.1
FAN09G4389 Fragaria x ananassa HOM05D006982 ORTHO05D008909 2.2e-61 239.2 156 72.4
BraA06t26915Z Brassica rapa HOM05D006982 ORTHO05D008909 3.8e-61 238.4 139 81.3
Actinidia07827 Actinidia chinensis HOM05D006982 ORTHO05D008909 8.5e-61 237.3 134 81.3
CAN.G734.5 Capsicum annuum HOM05D006982 ORTHO05D008909 8.5e-61 237.3 158 71.5
FAN02G3418 Fragaria x ananassa HOM05D006982 ORTHO05D008909 1.9e-60 236.1 154 73.4
Cpa.g.sc14.148 Carica papaya HOM05D006982 ORTHO05D008909 2.5e-60 235.7 138 79.0
Sopen03g016600 Solanum pennellii HOM05D006982 ORTHO05D008909 4.2e-60 235.0 158 68.4
PSO017G1487 Papaver somniferum HOM05D006982 ORTHO05D008909 9.4e-60 233.8 161 70.2
ATR0064G116 Amborella trichopoda HOM05D006982 ORTHO05D008909 6.1e-59 231.1 159 69.8
Solyc03g013250.4 Solanum lycopersicum HOM05D006982 ORTHO05D008909 7.9e-59 230.7 158 67.1
PSO478G0313 Papaver somniferum HOM05D006982 ORTHO05D008909 1.8e-58 229.6 158 70.3
Prupe.3G258600 Prunus persica HOM05D006982 ORTHO05D008909 5.1e-58 228.0 164 68.9
Os03g0257000 Oryza sativa ssp. japonica HOM05D006982 ORTHO05D008909 5.7e-57 224.6 154 63.6
Hund13166 Selenicereus undatus HOM05D006982 ORTHO05D008909 2.2e-56 222.6 151 72.2
Zm00001eb011170 Zea mays HOM05D006982 ORTHO05D008909 2.8e-56 222.2 151 65.6
Os03g0209700 Oryza sativa ssp. japonica HOM05D006982 ORTHO05D008909 3.7e-56 221.9 154 64.3
SEGI_41437 Sequoiadendron giganteum HOM05D006982 ORTHO05D008909 6.1e-51 204.5 153 62.7
Lj4A116T80 Lonicera japonica HOM05D006982 ORTHO05D008909 2.3e-50 202.6 126 77.8
Medtr6g013815 Medicago truncatula HOM05D006982 ORTHO05D008909 3.9e-50 201.8 122 76.2
Gohir.A09G011401 Gossypium hirsutum HOM05D006982 ORTHO05D008909 1.1e-49 200.3 167 61.1
SMO164G0193 Selaginella moellendorffii HOM05D006982 ORTHO05D008909 4.4e-49 198.4 149 59.7
CDE04G2259 Ceratophyllum demersum HOM05D006982 ORTHO05D008909 3.7e-48 195.3 128 70.3
Ah.10g031970 Amaranthus hybridus HOM05D006982 ORTHO05D008909 6.3e-48 194.5 177 58.2
COL.COLO4_21380 Corchorus olitorius HOM05D006982 ORTHO05D008909 1.4e-47 193.4 124 72.6
BolC2t11598H Brassica oleracea HOM05D006982 ORTHO05D008909 3.1e-47 192.2 132 70.5
Pp3c21_18720 Physcomitrium patens HOM05D006982 ORTHO05D008909 2.2e-45 186.0 157 55.4
Peaxi162Scf00451g00425 Petunia axillaris HOM05D006982 ORTHO05D008909 4.2e-44 181.8 158 60.1
unitig_899.g15159 Utricularia gibba HOM05D006982 ORTHO05D008909 1.4e-42 176.8 155 59.4
arahy.Tifrunner.gnm1.ann1.NGZQ86 Arachis hypogaea HOM05D006982 ORTHO05D008909 2.9e-37 159.1 156 53.8
arahy.Tifrunner.gnm1.ann1.84WVAW Arachis hypogaea HOM05D006982 ORTHO05D008909 7.2e-36 154.5 158 54.4
C07p38170 Brassica napus HOM05D006982 ORTHO05D008909 5.2e-34 148.3 108 65.7
SHI03750 Sapria himalayana HOM05D000002 ORTHO05D000001 4.5e-30 135.2 92 66.3
FAN05G3993 Fragaria x ananassa HOM05D006982 ORTHO05D008909 5.9e-30 134.8 89 75.3
C02p55410 Brassica napus HOM05D006982 ORTHO05D008909 7.7e-30 134.4 114 60.5
CSS0035536 Camellia sinensis var. sinensis HOM05D006982 ORTHO05D008909 9.5e-28 127.5 77 76.6
TPR.G3955 Trifolium pratense HOM05D006982 ORTHO05D008909 1.3e-24 117.1 58 91.4
AUR62018155 Chenopodium quinoa HOM05D006982 ORTHO05D008909 9.2e-15 84.3 50 80.0
Medtr6g013805 Medicago truncatula HOM05D006982 ORTHO05D008909 1.1e-10 70.9 44 72.7
CSS0038093 Camellia sinensis var. sinensis HOM05D006982 ORTHO05D008909 4.0e-10 68.9 33 90.9
AUR62006323 Chenopodium quinoa HOM05D003441 ORTHO05D044017 4.0e-10 68.9 65 52.3
Lj4A116T81 Lonicera japonica HOM05D006982 ORTHO05D008909 1.7e-08 63.5 33 81.8
PGSC0003DMG400033554 Solanum tuberosum HOM05D006982 ORTHO05D008909 4.9e-08 62.0 46 69.6
SHI03749 Sapria himalayana HOM05D006982 ORTHO05D000001 2.4e-07 59.7 32 75.0


User provided reference genes

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