Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc11g0004600 Simmondsia chinensis HOM05D004924 ORTHO05D005896 9.8e-123 443.4 205 100.0
Manes.01G120100 Manihot esculenta HOM05D004924 ORTHO05D005896 7.4e-62 241.1 134 76.1
Hma1.2p1_0158F.1_g070040 Hydrangea macrophylla HOM05D004924 ORTHO05D005896 8.2e-61 237.7 135 74.1
Oeu062710.1 Olea europaea HOM05D004924 ORTHO05D005896 5.3e-60 235.0 133 73.7
Cc07_g13240 Coffea canephora HOM05D004924 ORTHO05D005896 6.9e-60 234.6 131 76.3
Potri.017G131900 Populus trichocarpa HOM05D004924 ORTHO05D005896 1.5e-59 233.4 132 73.5
RcHm_v2.0_Chr3g0491661 Rosa chinensis HOM05D004924 ORTHO05D005896 1.5e-59 233.4 135 74.1
TAR622G1008 Trochodendron aralioides HOM05D004924 ORTHO05D005896 3.4e-59 232.3 131 74.8
HanXRQChr14g0444631 Helianthus annuus HOM05D004924 ORTHO05D005896 4.5e-59 231.9 132 72.7
Oeu062709.1 Olea europaea HOM05D004924 ORTHO05D005896 4.5e-59 231.9 133 71.4
TWI53G1907 Tripterygium wilfordii HOM05D004924 ORTHO05D005896 4.5e-59 231.9 133 71.4
Actinidia28798 Actinidia chinensis HOM05D004924 ORTHO05D005896 5.9e-59 231.5 134 71.6
Eucgr.F02876 Eucalyptus grandis HOM05D004924 ORTHO05D005896 5.9e-59 231.5 135 70.4
FvH4_1g30100 Fragaria vesca HOM05D004924 ORTHO05D005896 1.3e-58 230.3 135 71.9
Cpa.g.sc116.75 Carica papaya HOM05D004924 ORTHO05D005896 1.7e-58 229.9 139 71.9
CSS0001998 Camellia sinensis var. sinensis HOM05D004924 ORTHO05D005896 2.2e-58 229.6 128 76.6
RcHm_v2.0_Chr3g0491901 Rosa chinensis HOM05D004924 ORTHO05D005896 2.9e-58 229.2 135 71.9
ECA238G2739 Erigeron canadensis HOM05D004924 ORTHO05D005896 5.0e-58 228.4 132 68.9
QL02p059388 Quercus lobata HOM05D004924 ORTHO05D005896 5.0e-58 228.4 129 74.4
MSTRG.11286 Avicennia marina HOM05D004924 ORTHO05D005896 6.5e-58 228.0 162 62.3
Ca_17087_v3 Cicer arietinum L. HOM05D004924 ORTHO05D005896 6.5e-58 228.0 133 73.7
Duzib133G0699 Durio zibethinus HOM05D004924 ORTHO05D005896 6.5e-58 228.0 132 71.2
FAN16G2823 Fragaria x ananassa HOM05D004924 ORTHO05D005896 8.5e-58 227.6 135 71.1
Thecc.04G063500 Theobroma cacao HOM05D004924 ORTHO05D005896 8.5e-58 227.6 137 67.9
Atru.chr1.1951 Acer truncatum HOM05D004924 ORTHO05D005896 1.1e-57 227.3 129 73.6
Lj6g0022987 Lotus japonicus HOM05D004924 ORTHO05D005896 1.4e-57 226.9 140 70.7
Psat5g120000 Pisum sativum HOM05D004924 ORTHO05D005896 1.4e-57 226.9 130 76.2
Cfa007788 Carpinus fangiana HOM05D004924 ORTHO05D005896 1.9e-57 226.5 132 73.5
COL.COLO4_17898 Corchorus olitorius HOM05D004924 ORTHO05D005896 1.9e-57 226.5 139 66.2
CiPaw.03G074000 Carya illinoinensis HOM05D004924 ORTHO05D005896 2.5e-57 226.1 135 70.4
Haze_14284 Corylus avellana HOM05D004924 ORTHO05D005896 3.2e-57 225.7 132 73.5
vmacro18525 Vaccinium macrocarpon HOM05D004924 ORTHO05D005896 3.2e-57 225.7 132 71.2
Cfa007789 Carpinus fangiana HOM05D004924 ORTHO05D005896 4.2e-57 225.3 132 72.7
DCAR_011635 Daucus carota HOM05D004924 ORTHO05D005896 4.2e-57 225.3 132 70.5
Sopen11g006240 Solanum pennellii HOM05D004924 ORTHO05D005896 5.5e-57 224.9 132 71.2
GSVIVG01021786001 Vitis vinifera HOM05D004924 ORTHO05D005896 5.5e-57 224.9 132 73.5
Thhalv10016053m.g Eutrema salsugineum HOM05D004924 ORTHO05D005896 7.2e-57 224.6 132 69.7
PSO017G6719 Papaver somniferum HOM05D004924 ORTHO05D005896 7.2e-57 224.6 132 71.2
PGR004G0557 Punica granatum HOM05D004924 ORTHO05D005896 7.2e-57 224.6 135 71.1
MD09G1269800 Malus domestica HOM05D004924 ORTHO05D005896 9.3e-57 224.2 135 68.1
RcHm_v2.0_Chr3g0491731 Rosa chinensis HOM05D004924 ORTHO05D005896 9.3e-57 224.2 135 70.4
Eucgr.F02877 Eucalyptus grandis HOM05D004924 ORTHO05D005896 1.2e-56 223.8 135 67.4
Phvul.001G229100 Phaseolus vulgaris HOM05D004924 ORTHO05D005896 1.2e-56 223.8 133 71.4
Prupe.3G165600 Prunus persica HOM05D004924 ORTHO05D005896 1.6e-56 223.4 132 69.7
Solyc11g011450.2 Solanum lycopersicum HOM05D004924 ORTHO05D005896 1.6e-56 223.4 132 70.5
PGSC0003DMG400013239 Solanum tuberosum HOM05D004924 ORTHO05D005896 1.6e-56 223.4 132 70.5
CARHR196230 Cardamine hirsuta HOM05D004924 ORTHO05D005896 2.1e-56 223.0 132 69.7
FAN19G2011 Fragaria x ananassa HOM05D004924 ORTHO05D005896 2.1e-56 223.0 133 69.2
FAN23G2495 Fragaria x ananassa HOM05D004924 ORTHO05D005896 2.1e-56 223.0 135 70.4
Glyma.18G041500 Glycine max HOM05D004924 ORTHO05D005896 2.1e-56 223.0 133 72.2
AL6G27940 Arabidopsis lyrata HOM05D004924 ORTHO05D005896 2.7e-56 222.6 132 69.7
Cfa007787 Carpinus fangiana HOM05D004924 ORTHO05D005896 3.6e-56 222.2 132 72.0
Medtr3g065140 Medicago truncatula HOM05D004924 ORTHO05D005896 3.6e-56 222.2 132 71.2
SalBow3G4470 Salvia bowleyana HOM05D004924 ORTHO05D005896 3.6e-56 222.2 133 69.9
THA.LOC104820884 Tarenaya hassleriana HOM05D004924 ORTHO05D005896 3.6e-56 222.2 129 71.3
CiPaw.03G073900 Carya illinoinensis HOM05D004924 ORTHO05D005896 4.6e-56 221.9 135 68.1
Potri.017G132500 Populus trichocarpa HOM05D004924 ORTHO05D005896 4.6e-56 221.9 136 69.1
MSTRG.11290 Avicennia marina HOM05D004924 ORTHO05D005896 6.1e-56 221.5 135 69.6
VMungo1383G1490 Vigna mungo HOM05D004924 ORTHO05D005896 6.1e-56 221.5 134 70.1
FvH4_1g27730 Fragaria vesca HOM05D004924 ORTHO05D005896 7.9e-56 221.1 132 68.9
Lsat_1_v5_gn_2_68260 Lactuca sativa HOM05D004924 ORTHO05D005896 7.9e-56 221.1 130 69.2
SGA_v2.0_scaffold108G30967 Striga asiatica HOM05D004924 ORTHO05D005896 7.9e-56 221.1 133 72.2
BcaB01g04965 Brassica carinata HOM05D004924 ORTHO05D005896 1.0e-55 220.7 135 67.4
CAN.G222.65 Capsicum annuum HOM05D004924 ORTHO05D005896 1.0e-55 220.7 132 68.9
Nitab4.5_0001650g0010 Nicotiana tabacum HOM05D004924 ORTHO05D005896 1.0e-55 220.7 132 70.5
Psat5g119920 Pisum sativum HOM05D004924 ORTHO05D005896 1.0e-55 220.7 130 73.8
A03p08080 Brassica napus HOM05D004924 ORTHO05D005896 1.3e-55 220.3 132 68.2
BraA03t10133Z Brassica rapa HOM05D004924 ORTHO05D005896 1.3e-55 220.3 132 68.2
Aa31LG11G12660 Aethionema arabicum HOM05D004924 ORTHO05D005896 1.8e-55 219.9 132 68.2
AT5G16940 Arabidopsis thaliana HOM05D004924 ORTHO05D005896 1.8e-55 219.9 132 68.2
Carub.0006s1515 Capsella rubella HOM05D004924 ORTHO05D005896 1.8e-55 219.9 132 67.4
BcaB01g05238 Brassica carinata HOM05D004924 ORTHO05D005896 3.0e-55 219.2 131 68.7
FAN10G2899 Fragaria x ananassa HOM05D004924 ORTHO05D005896 3.0e-55 219.2 135 68.9
Nn3g18375 Nelumbo nucifera HOM05D004924 ORTHO05D005896 3.0e-55 219.2 132 67.4
QL02p059397 Quercus lobata HOM05D004924 ORTHO05D005896 3.0e-55 219.2 129 72.1
Glyma.18G041600 Glycine max HOM05D004924 ORTHO05D005896 3.9e-55 218.8 143 69.2
TPR.G23209 Trifolium pratense HOM05D004924 ORTHO05D005896 6.7e-55 218.0 132 72.7
C03p09350 Brassica napus HOM05D004924 ORTHO05D005896 1.1e-54 217.2 131 67.9
ClCG08G009070 Citrullus lanatus HOM05D004924 ORTHO05D005896 1.1e-54 217.2 131 69.5
Ciclev10013082m.g Citrus clementina HOM05D004924 ORTHO05D005896 1.1e-54 217.2 131 67.9
arahy.Tifrunner.gnm1.ann1.FH3EPN Arachis hypogaea HOM05D004924 ORTHO05D005896 1.5e-54 216.9 133 69.9
Gohir.A08G229800 Gossypium hirsutum HOM05D004924 ORTHO05D005896 1.5e-54 216.9 135 68.1
Migut.H02231 Erythranthe guttata HOM05D004924 ORTHO05D005896 1.9e-54 216.5 131 69.5
Gorai.004G266800 Gossypium raimondii HOM05D004924 ORTHO05D005896 1.9e-54 216.5 135 68.1
Gohir.A08G229900 Gossypium hirsutum HOM05D004924 ORTHO05D005896 2.5e-54 216.1 133 68.4
Lalb_Chr15g0085011 Lupinus albus HOM05D004924 ORTHO05D005896 2.5e-54 216.1 130 67.7
Peaxi162Scf00464g00014 Petunia axillaris HOM05D004924 ORTHO05D005896 2.5e-54 216.1 132 68.9
unitig_699.g19298 Utricularia gibba HOM05D004924 ORTHO05D005896 2.5e-54 216.1 129 69.8
MELO3C026504.2 Cucumis melo HOM05D004924 ORTHO05D005896 3.3e-54 215.7 135 67.4
Gohir.D08G250200 Gossypium hirsutum HOM05D004924 ORTHO05D005896 3.3e-54 215.7 135 68.1
Lj2C517G6 Lonicera japonica HOM05D004924 ORTHO05D005896 5.7e-54 214.9 123 73.2
RcHm_v2.0_Chr3g0491691 Rosa chinensis HOM05D004924 ORTHO05D005896 5.7e-54 214.9 135 67.4
BolC3t13429H Brassica oleracea HOM05D004924 ORTHO05D005896 1.3e-53 213.8 131 67.2
Sed0017700 Sechium edule HOM05D004924 ORTHO05D005896 1.3e-53 213.8 131 65.6
CsaV3_6G036070 Cucumis sativus L. HOM05D004924 ORTHO05D005896 1.6e-53 213.4 134 67.2
Glyma.11G215100 Glycine max HOM05D004924 ORTHO05D005896 3.7e-53 212.2 122 73.8
EL10Ac3g05220 Beta vulgaris HOM05D004924 ORTHO05D005896 6.3e-53 211.5 134 66.4
Aqoxy2G04179 Aquilegia oxysepala HOM05D004924 ORTHO05D005896 1.4e-52 210.3 128 70.3
CANSAT64G2411 Cannabis sativa HOM05D004924 ORTHO05D005896 1.8e-52 209.9 130 69.2
AUR62035584 Chenopodium quinoa HOM05D004924 ORTHO05D005896 3.1e-52 209.1 133 66.2
Pp3c3_1640 Physcomitrium patens HOM05D004924 ORTHO05D005896 3.1e-52 209.1 131 67.9
MD09G1269600 Malus domestica HOM05D004924 ORTHO05D005896 4.1e-52 208.8 135 64.4
AUR62006044 Chenopodium quinoa HOM05D004924 ORTHO05D005896 5.3e-52 208.4 133 66.2
Gohir.D08G250300 Gossypium hirsutum HOM05D004924 ORTHO05D005896 5.3e-52 208.4 119 71.4
MBI19_g44856_MAGBIO Magnolia biondii HOM05D004924 ORTHO05D005896 5.3e-52 208.4 129 68.2
SEGI_33705 Sequoiadendron giganteum HOM05D004924 ORTHO05D005896 6.9e-52 208.0 134 64.9
Ah.13g070610 Amaranthus hybridus HOM05D004924 ORTHO05D005896 1.2e-51 207.2 139 61.9
Sabra17G0109900 Salix brachista HOM05D004924 ORTHO05D005896 2.6e-51 206.1 122 70.5
Psat5g119960 Pisum sativum HOM05D004924 ORTHO05D005896 3.4e-51 205.7 130 70.0
Potri.017G132000 Populus trichocarpa HOM05D004924 ORTHO05D005896 7.7e-51 204.5 125 68.8
Sabra17G0109800 Salix brachista HOM05D004924 ORTHO05D005896 1.7e-50 203.4 118 73.7
ATR0753G109 Amborella trichopoda HOM05D004924 ORTHO05D005896 2.9e-50 202.6 133 63.2
Os09g0397700 Oryza sativa ssp. japonica HOM05D004924 ORTHO05D005896 5.0e-50 201.8 129 68.2
Zm00001eb099200 Zea mays HOM05D004924 ORTHO05D005896 1.1e-49 200.7 129 68.2
MD17G1267700 Malus domestica HOM05D004924 ORTHO05D005896 1.4e-49 200.3 119 70.6
Gorai.004G267000 Gossypium raimondii HOM05D004924 ORTHO05D005896 1.9e-49 199.9 119 69.7
MELO3C022822.2 Cucumis melo HOM05D004924 ORTHO05D005896 2.5e-49 199.5 120 70.0
Lsat_1_v5_gn_3_63921 Lactuca sativa HOM05D004924 ORTHO05D005896 3.2e-49 199.1 127 65.4
Peaxi162Scf00464g00013 Petunia axillaris HOM05D004924 ORTHO05D005896 7.2e-49 198.0 171 54.4
ClCG03G008860 Citrullus lanatus HOM05D004924 ORTHO05D005896 2.1e-48 196.4 120 67.5
HanXRQChr15g0482911 Helianthus annuus HOM05D004924 ORTHO05D005896 3.9e-47 192.2 121 65.3
Ciclev10013505m.g Citrus clementina HOM05D004924 ORTHO05D005896 6.7e-47 191.4 118 67.8
Mapoly0175s0005 Marchantia polymorpha HOM05D004924 ORTHO05D005896 1.5e-46 190.3 133 60.2
Zm00001eb099210 Zea mays HOM05D004924 ORTHO05D005896 2.0e-46 189.9 139 61.2
MD17G1267500 Malus domestica HOM05D004924 ORTHO05D005896 3.3e-46 189.1 119 66.4
AagrBONN_evm.TU.Sc2ySwM_117.508 Anthoceros agrestis HOM05D004924 ORTHO05D005896 7.4e-46 188.0 131 61.1
SMO134G0286 Selaginella moellendorffii HOM05D004924 ORTHO05D005896 3.7e-45 185.7 130 60.8
CsaV3_5G023900 Cucumis sativus L. HOM05D004924 ORTHO05D005896 1.8e-44 183.3 112 69.6
Gohir.A10G199166 Gossypium hirsutum HOM05D004924 ORTHO05D005896 2.9e-42 176.0 135 55.6
SMO182G0004 Selaginella moellendorffii HOM05D004924 ORTHO05D005896 2.9e-42 176.0 130 59.2
Zm00001eb099170 Zea mays HOM05D004924 ORTHO05D005896 1.2e-40 170.6 107 66.4
SMO134G0172 Selaginella moellendorffii HOM05D004924 ORTHO05D005896 1.6e-40 170.2 130 57.7
Gohir.A04G085566 Gossypium hirsutum HOM05D004924 ORTHO05D005896 2.1e-40 169.9 135 58.5
Zm00001eb099190 Zea mays HOM05D004924 ORTHO05D005896 2.7e-40 169.5 101 69.3
Ah.13g070620 Amaranthus hybridus HOM05D004924 ORTHO05D005896 1.0e-39 167.5 120 61.7
Thecc.K0008300 Theobroma cacao HOM05D004924 ORTHO05D005896 1.8e-39 166.8 103 67.0
AUR62006043 Chenopodium quinoa HOM05D004924 ORTHO05D005896 2.3e-39 166.4 117 61.5
AUR62035585 Chenopodium quinoa HOM05D004924 ORTHO05D005896 7.4e-38 161.4 122 57.4
Glyma.11G214900 Glycine max HOM05D004924 ORTHO05D005896 3.7e-37 159.1 134 59.0
Lj2C517T7 Lonicera japonica HOM05D004924 ORTHO05D005896 2.6e-35 152.9 96 70.8
MD09G1269100 Malus domestica HOM05D004924 ORTHO05D005896 3.2e-33 146.0 100 61.0
Gorai.004G266900 Gossypium raimondii HOM05D004924 ORTHO05D005896 5.5e-33 145.2 86 70.9
PRCOL_00006023 Prasinoderma coloniale HOM05D004924 ORTHO05D005896 2.0e-30 136.7 141 44.7
Nitab4.5_0006562g0060 Nicotiana tabacum HOM05D004924 ORTHO05D005896 2.2e-29 133.3 75 74.7
FAN28G0301 Fragaria x ananassa HOM05D004924 ORTHO05D005896 1.0e-26 124.4 74 70.3
Lj1P958T70 Lonicera japonica HOM05D004924 ORTHO05D005896 6.1e-24 115.2 74 68.9
Gohir.D06G065233 Gossypium hirsutum HOM05D004924 ORTHO05D005896 1.1e-20 104.4 78 57.7
Gohir.A06G089850 Gossypium hirsutum HOM05D004924 ORTHO05D005896 1.4e-20 104.0 108 47.2
Gohir.D08G250250 Gossypium hirsutum HOM05D004924 ORTHO05D005896 1.8e-20 103.6 63 69.8
Zm00001eb099180 Zea mays HOM05D004924 ORTHO05D005896 3.5e-19 99.4 80 56.2


User provided reference genes

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