Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc11g0004590 Simmondsia chinensis HOM05D006674 ORTHO05D007954 5.9e-298 1026.9 584 100.0
Nn4g24371 Nelumbo nucifera HOM05D006674 ORTHO05D007954 2.4e-137 493.4 552 58.5
Dinv28183 Davidia involucrata HOM05D006674 ORTHO05D007954 4.9e-135 485.7 557 58.9
MD17G1268600 Malus domestica HOM05D006674 ORTHO05D007954 4.6e-133 479.2 572 57.5
EL10Ac2g03314 Beta vulgaris HOM05D006674 ORTHO05D007954 3.3e-131 473.0 513 60.2
Actinidia28801 Actinidia chinensis HOM05D006674 ORTHO05D007954 2.8e-130 469.9 559 56.0
TWI77G1007 Tripterygium wilfordii HOM05D006674 ORTHO05D007954 8.4e-127 458.4 560 56.1
Lj6g0000042 Lotus japonicus HOM05D006674 ORTHO05D007954 1.4e-126 457.6 517 60.0
Eucgr.F02873 Eucalyptus grandis HOM05D006674 ORTHO05D007954 1.9e-126 457.2 495 58.6
Lalb_Chr15g0084971 Lupinus albus HOM05D006674 ORTHO05D007954 1.0e-124 451.4 515 58.8
GSVIVG01030703001 Vitis vinifera HOM05D006674 ORTHO05D007954 2.3e-124 450.3 547 56.3
Duzib133G1445 Durio zibethinus HOM05D006674 ORTHO05D007954 2.5e-123 446.8 562 55.3
CSS0023224 Camellia sinensis var. sinensis HOM05D006674 ORTHO05D007954 5.6e-123 445.7 556 56.3
Glyma.18G041200 Glycine max HOM05D006674 ORTHO05D007954 5.6e-123 445.7 516 59.3
Glyma.11G215400 Glycine max HOM05D006674 ORTHO05D007954 4.8e-122 442.6 520 58.3
FvH4_1g30190 Fragaria vesca HOM05D006674 ORTHO05D007954 1.5e-120 437.6 509 57.2
RcHm_v2.0_Chr3g0491391 Rosa chinensis HOM05D006674 ORTHO05D007954 2.6e-120 436.8 507 57.2
Phvul.001G229300 Phaseolus vulgaris HOM05D006674 ORTHO05D007954 1.1e-118 431.4 499 58.1
Cc07_g13280 Coffea canephora HOM05D006674 ORTHO05D007954 2.4e-118 430.3 509 58.2
Thecc.04G053800 Theobroma cacao HOM05D006674 ORTHO05D007954 9.3e-118 428.3 564 55.3
Thhalv10027712m.g Eutrema salsugineum HOM05D006674 ORTHO05D007954 2.7e-117 426.8 516 56.2
Atru.chr1.1984 Acer truncatum HOM05D006674 ORTHO05D007954 4.6e-117 426.0 555 55.0
TPR.G24904 Trifolium pratense HOM05D006674 ORTHO05D007954 1.8e-116 424.1 532 56.4
BcaC02g09589 Brassica carinata HOM05D006674 ORTHO05D007954 5.6e-115 419.1 554 52.3
AUR62042219 Chenopodium quinoa HOM05D006674 ORTHO05D007954 7.4e-115 418.7 489 51.3
BcaB06g27104 Brassica carinata HOM05D006674 ORTHO05D007954 1.3e-114 417.9 556 52.9
Prupe.3G166300 Prunus persica HOM05D006674 ORTHO05D007954 1.3e-114 417.9 428 62.9
CiPaw.03G073400 Carya illinoinensis HOM05D006674 ORTHO05D007954 9.0e-113 411.8 476 58.0
Potri.004G085200 Populus trichocarpa HOM05D006674 ORTHO05D007954 7.6e-112 408.7 558 51.1
VMungo1383G3322 Vigna mungo HOM05D006674 ORTHO05D007954 1.4e-110 404.4 569 43.8
CsaV3_3G017830 Cucumis sativus L. HOM05D006674 ORTHO05D007954 1.9e-110 404.1 550 52.4
Psat5g120320 Pisum sativum HOM05D006674 ORTHO05D007954 3.2e-110 403.3 538 54.6
Sp7g04510 Schrenkiella parvula HOM05D006674 ORTHO05D007954 7.1e-110 402.1 530 53.2
Manes.01G119600 Manihot esculenta HOM05D006674 ORTHO05D007954 9.3e-110 401.7 546 53.8
vmacro18526 Vaccinium macrocarpon HOM05D006674 ORTHO05D007954 1.8e-108 397.5 561 52.6
arahy.Tifrunner.gnm1.ann1.M54V7M Arachis hypogaea HOM05D006674 ORTHO05D007954 3.0e-108 396.7 517 54.0
Nitab4.5_0001650g0150 Nicotiana tabacum HOM05D006674 ORTHO05D007954 3.0e-108 396.7 567 51.0
Haze_14280 Corylus avellana HOM05D006674 ORTHO05D007954 4.3e-107 392.9 432 62.7
Medtr3g065220 Medicago truncatula HOM05D006674 ORTHO05D007954 9.6e-107 391.7 518 54.2
Sed0023155 Sechium edule HOM05D006674 ORTHO05D007954 2.8e-106 390.2 550 52.5
THA.LOC104805245 Tarenaya hassleriana HOM05D006674 ORTHO05D007954 9.0e-105 385.2 534 52.8
Migut.H02229 Erythranthe guttata HOM05D006674 ORTHO05D007954 7.6e-104 382.1 546 50.7
Lsat_1_v5_gn_1_78040 Lactuca sativa HOM05D006674 ORTHO05D007954 6.5e-103 379.0 488 55.5
Gohir.A07G073700 Gossypium hirsutum HOM05D006674 ORTHO05D007954 1.9e-102 377.5 562 50.7
Solyc11g011390.3 Solanum lycopersicum HOM05D006674 ORTHO05D007954 9.3e-102 375.2 553 49.5
Nitab4.5_0009806g0010 Nicotiana tabacum HOM05D006674 ORTHO05D007954 2.1e-101 374.0 554 50.4
ECA236G3280 Erigeron canadensis HOM05D006674 ORTHO05D007954 2.7e-101 373.6 482 54.6
FAN26G0259 Fragaria x ananassa HOM05D006674 ORTHO05D007954 3.5e-101 373.2 525 51.4
Aa31LG9G17490 Aethionema arabicum HOM05D006674 ORTHO05D007954 1.8e-100 370.9 560 47.7
PGR004G1202 Punica granatum HOM05D006674 ORTHO05D007954 1.5e-99 367.9 506 44.3
CDE06G1904 Ceratophyllum demersum HOM05D006674 ORTHO05D007954 4.3e-99 366.3 518 51.9
A04p10750 Brassica napus HOM05D006674 ORTHO05D007954 1.6e-98 364.4 564 48.9
AL7G46330 Arabidopsis lyrata HOM05D006674 ORTHO05D007954 4.8e-98 362.8 516 51.7
BolC4t26017H Brassica oleracea HOM05D006674 ORTHO05D007954 3.1e-97 360.1 565 48.7
BraA04t16739Z Brassica rapa HOM05D006674 ORTHO05D007954 6.9e-97 359.0 564 48.6
MELO3C031718.2 Cucumis melo HOM05D006674 ORTHO05D007954 6.9e-97 359.0 451 57.0
arahy.Tifrunner.gnm1.ann1.V27PH4 Arachis hypogaea HOM05D006674 ORTHO05D007954 2.0e-96 357.5 506 52.6
Sopen11g006190 Solanum pennellii HOM05D006674 ORTHO05D007954 5.9e-96 355.9 588 46.6
Aqoxy5G02269 Aquilegia oxysepala HOM05D006674 ORTHO05D007954 7.7e-96 355.5 560 50.2
Sabra04G0056300 Salix brachista HOM05D006674 ORTHO05D007954 1.0e-95 355.1 558 48.2
C04p44470 Brassica napus HOM05D006674 ORTHO05D007954 3.8e-95 353.2 566 48.4
HanXRQChr09g0259811 Helianthus annuus HOM05D006674 ORTHO05D007954 1.1e-94 351.7 479 54.7
COL.COLO4_13419 Corchorus olitorius HOM05D006674 ORTHO05D007954 1.6e-93 347.8 486 54.1
Lj4C259T11 Lonicera japonica HOM05D006674 ORTHO05D007954 6.1e-93 345.9 324 58.6
PGSC0003DMG400013236 Solanum tuberosum HOM05D006674 ORTHO05D007954 1.8e-92 344.4 468 53.4
Carub.0007s3275 Capsella rubella HOM05D006674 ORTHO05D007954 2.3e-92 344.0 492 52.2
Rhsim08G0019400 Rhododendron simsii HOM05D006674 ORTHO05D007954 6.7e-92 342.4 375 62.9
Gorai.001G082800 Gossypium raimondii HOM05D006674 ORTHO05D007954 4.8e-90 336.3 562 47.2
Gohir.D07G078400 Gossypium hirsutum HOM05D006674 ORTHO05D007954 4.5e-88 329.7 562 46.6
SGA_v2.0_scaffold108G30962 Striga asiatica HOM05D006674 ORTHO05D007954 1.1e-86 325.1 551 45.4
DCAR_016695 Daucus carota HOM05D006674 ORTHO05D007954 1.6e-85 321.2 309 68.9
Ciclev10011395m.g Citrus clementina HOM05D006674 ORTHO05D007954 7.9e-85 318.9 559 46.9
Peaxi162Scf00562g00218 Petunia axillaris HOM05D006674 ORTHO05D007954 3.0e-84 317.0 342 62.9
CARHR215300 Cardamine hirsuta HOM05D006674 ORTHO05D007954 1.8e-76 291.2 331 48.9
Ca_17090_v3 Cicer arietinum L. HOM05D006674 ORTHO05D007954 2.0e-75 287.7 302 53.0
unitig_27.g24984 Utricularia gibba HOM05D006674 ORTHO05D007954 2.4e-73 280.8 475 43.8
ClCG05G010650 Citrullus lanatus HOM05D006674 ORTHO05D007954 3.5e-72 276.9 317 48.9
CAN.G222.57 Capsicum annuum HOM05D006674 ORTHO05D007954 1.7e-63 248.1 271 49.4
AT5G37590 Arabidopsis thaliana HOM05D006674 ORTHO05D007954 2.0e-59 234.6 516 42.2
Os04g0278200 Oryza sativa ssp. japonica HOM05D006674 ORTHO05D007954 7.7e-56 222.6 239 69.5
Sabra04G0094200 Salix brachista HOM05D002338 ORTHO05D006102 7.2e-54 216.1 429 34.7
ATR0753G123 Amborella trichopoda HOM05D006674 ORTHO05D007954 1.6e-53 214.9 267 46.1
PSO017G4728 Papaver somniferum HOM05D006674 ORTHO05D007954 1.4e-49 201.8 275 59.3
PSO478G0741 Papaver somniferum HOM05D006674 ORTHO05D007954 1.6e-48 198.4 276 59.4
QL02p059277 Quercus lobata HOM05D006674 ORTHO05D007954 1.1e-41 175.6 180 49.4
SMO170G0006 Selaginella moellendorffii HOM05D005601 ORTHO05D007265 3.5e-40 170.6 443 39.1
CAN.G222.56 Capsicum annuum HOM05D006674 ORTHO05D007954 4.3e-38 163.7 271 56.1
ATR0753G105 Amborella trichopoda HOM05D006674 ORTHO05D007954 1.4e-36 158.7 129 59.7
ClCG05G010660 Citrullus lanatus HOM05D006674 ORTHO05D007954 1.8e-36 158.3 183 49.2
HPP92_002281 Vanilla planifolia HOM05D006674 ORTHO05D007954 8.9e-36 156.0 391 43.5
CSS0022976 Camellia sinensis var. sinensis HOM05D006674 ORTHO05D007954 5.1e-31 140.2 98 64.3
Mapoly0177s0018 Marchantia polymorpha HOM05D006674 ORTHO05D007954 2.1e-29 134.8 505 25.1
Zm00001eb221050 Zea mays HOM05D006674 ORTHO05D007954 7.6e-27 126.3 126 48.4
Cpa.g.sc340.5 Carica papaya HOM05D006674 ORTHO05D007954 6.4e-26 123.2 175 43.4
Pp3c16_20720 Physcomitrium patens HOM05D006674 ORTHO05D007954 4.1e-25 120.6 121 52.9
FAN26G0614 Fragaria x ananassa HOM05D006674 ORTHO05D007954 4.7e-21 107.1 127 48.8
Hund13087 Selenicereus undatus HOM05D006674 ORTHO05D007954 6.2e-21 106.7 141 44.0
SalBow1G3838 Salvia bowleyana HOM05D006674 ORTHO05D007954 1.4e-20 105.5 175 40.6
CBR_g12189 Chara braunii HOM05D000019 ORTHO05D000002 1.8e-20 105.1 135 40.0
arahy.Tifrunner.gnm1.ann1.EIPD4W Arachis hypogaea HOM05D006674 ORTHO05D007954 2.9e-18 97.8 100 54.0
Hma1.2p1_1214F.1_g267580 Hydrangea macrophylla HOM05D006674 ORTHO05D007954 1.9e-17 95.1 194 36.1
Glyma.08G281500 Glycine max HOM05D006674 ORTHO05D007954 7.8e-16 89.7 68 66.2
CAN.G691.5 Capsicum annuum HOM05D006674 ORTHO05D007954 1.3e-15 89.0 149 36.2
SEGI_15610 Sequoiadendron giganteum HOM05D006674 ORTHO05D007954 8.7e-15 86.3 83 56.6
QL02p059314 Quercus lobata HOM05D006674 ORTHO05D007954 4.3e-14 84.0 169 37.3
MCO08G049 Micromonas commoda HOM05D006674 ORTHO05D007954 1.6e-13 82.0 358 34.9
CSS0039398 Camellia sinensis var. sinensis HOM05D006674 ORTHO05D007954 2.4e-12 78.2 48 75.0
arahy.Tifrunner.gnm1.ann1.UE2S4S Arachis hypogaea HOM05D006674 ORTHO05D007954 2.0e-11 75.1 118 37.3
Zm00001eb221070 Zea mays HOM05D006674 ORTHO05D007954 2.0e-11 75.1 210 26.2
QL02p059287 Quercus lobata HOM05D006674 ORTHO05D007954 9.9e-11 72.8 45 80.0
CAN.G222.66 Capsicum annuum HOM05D006674 ORTHO05D007954 2.4e-09 68.2 293 23.9
Peaxi162Scf00562g00214 Petunia axillaris HOM05D006674 ORTHO05D007954 5.4e-09 67.0 80 42.5
Oeu058058.1 Olea europaea HOM05D013212 ORTHO05D007954 9.3e-09 66.2 123 35.0
CSS0023659 Camellia sinensis var. sinensis HOM05D006674 ORTHO05D007954 4.6e-08 63.9 42 73.8
arahy.Tifrunner.gnm1.ann1.MX1HDN Arachis hypogaea HOM05D006674 ORTHO05D007954 3.0e-07 61.2 48 56.2
arahy.Tifrunner.gnm1.ann1.PS0MXP Arachis hypogaea HOM05D006674 ORTHO05D007954 3.0e-07 61.2 48 56.2
arahy.Tifrunner.gnm1.ann1.ZN5I3T Arachis hypogaea HOM05D000189 ORTHO05D007954 1.5e-06 58.9 59 45.8
arahy.Tifrunner.gnm1.ann1.N9UN2I Arachis hypogaea HOM05D000138 ORTHO05D000078 1.9e-06 58.5 48 54.2
arahy.Tifrunner.gnm1.ann1.2ASK5S Arachis hypogaea HOM05D000068 ORTHO05D026879 2.5e-06 58.2 49 53.1


User provided reference genes

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