Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc11g0004530 Simmondsia chinensis HOM05D004935 ORTHO05D005676 1.1e-90 337.0 235 100.0
Sc11g0004790 Simmondsia chinensis HOM05D004935 ORTHO05D005676 3.3e-90 335.5 235 89.8
Hund13074 Selenicereus undatus HOM05D004935 ORTHO05D005676 7.5e-42 174.9 242 49.6
Hma1.2p1_0034F.1_g021280 Hydrangea macrophylla HOM05D004935 ORTHO05D005676 1.2e-34 151.0 231 45.5
Duzib138G1863 Durio zibethinus HOM05D004935 ORTHO05D005676 9.8e-34 147.9 203 47.8
Thecc.04G001700 Theobroma cacao HOM05D004935 ORTHO05D005676 4.8e-33 145.6 195 49.2
Ciclev10029179m.g Citrus clementina HOM05D004935 ORTHO05D005676 6.3e-33 145.2 230 46.5
FAN28G0886 Fragaria x ananassa HOM05D004935 ORTHO05D005676 2.4e-32 143.3 194 47.4
Potri.004G082300 Populus trichocarpa HOM05D004935 ORTHO05D005676 3.1e-32 142.9 191 48.2
FvH4_1g28640 Fragaria vesca HOM05D004935 ORTHO05D005676 4.1e-32 142.5 194 47.4
Oeu029081.1 Olea europaea HOM05D004935 ORTHO05D005676 7.0e-32 141.7 159 57.9
CSS0027542 Camellia sinensis var. sinensis HOM05D004935 ORTHO05D005676 1.6e-31 140.6 198 45.5
CiPaw.03G075500 Carya illinoinensis HOM05D004935 ORTHO05D005676 1.6e-31 140.6 227 43.6
Duzib133G0236 Durio zibethinus HOM05D004935 ORTHO05D005676 2.7e-31 139.8 192 47.4
Rhsim10G0182800 Rhododendron simsii HOM05D004935 ORTHO05D005676 3.5e-31 139.4 224 43.3
Dinv19063 Davidia involucrata HOM05D004935 ORTHO05D005676 4.5e-31 139.0 180 46.7
MD09G1265200 Malus domestica HOM05D004935 ORTHO05D005676 5.9e-31 138.7 227 44.5
EL10Ac2g03209 Beta vulgaris HOM05D004935 ORTHO05D005676 7.7e-31 138.3 155 58.7
MD17G1261400 Malus domestica HOM05D004935 ORTHO05D005676 7.7e-31 138.3 227 44.5
Nitab4.5_0002465g0010 Nicotiana tabacum HOM05D004935 ORTHO05D005676 1.3e-30 137.5 239 42.3
CANSAT78G0803 Cannabis sativa HOM05D004935 ORTHO05D005676 1.7e-30 137.1 222 45.0
Prupe.3G163400 Prunus persica HOM05D004935 ORTHO05D005676 1.7e-30 137.1 227 43.2
Nitab4.5_0001088g0190 Nicotiana tabacum HOM05D004935 ORTHO05D005676 2.2e-30 136.7 237 42.6
Oeu032311.1 Olea europaea HOM05D004935 ORTHO05D005676 2.2e-30 136.7 209 43.1
RcHm_v2.0_Chr3g0492651 Rosa chinensis HOM05D004935 ORTHO05D005676 2.2e-30 136.7 194 47.9
Actinidia01601 Actinidia chinensis HOM05D004935 ORTHO05D005676 5.0e-30 135.6 193 45.6
Eucgr.J01625 Eucalyptus grandis HOM05D004935 ORTHO05D005676 6.5e-30 135.2 200 43.5
Sabra04G0054800 Salix brachista HOM05D004935 ORTHO05D005676 8.5e-30 134.8 212 41.0
Gohir.D07G078500 Gossypium hirsutum HOM05D004935 ORTHO05D005676 1.9e-29 133.7 190 48.4
vmacro20490 Vaccinium macrocarpon HOM05D004935 ORTHO05D005676 1.9e-29 133.7 218 42.7
TPR.G12527 Trifolium pratense HOM05D004935 ORTHO05D005676 2.5e-29 133.3 187 44.9
Aqoxy3G04045 Aquilegia oxysepala HOM05D004935 ORTHO05D005676 4.2e-29 132.5 189 46.0
Gohir.A07G073800 Gossypium hirsutum HOM05D004935 ORTHO05D005676 7.2e-29 131.7 190 45.3
Medtr5g091900 Medicago truncatula HOM05D004935 ORTHO05D005676 9.5e-29 131.3 210 43.3
Glyma.18G042900 Glycine max HOM05D004935 ORTHO05D005676 1.2e-28 131.0 195 45.6
Cfa007772 Carpinus fangiana HOM05D004935 ORTHO05D005676 1.6e-28 130.6 168 55.4
Dinv28224 Davidia involucrata HOM05D004935 ORTHO05D005676 1.6e-28 130.6 233 40.3
Lj4A255T23 Lonicera japonica HOM05D004935 ORTHO05D005676 1.6e-28 130.6 217 41.5
FAN26G0615 Fragaria x ananassa HOM05D004935 ORTHO05D005676 2.1e-28 130.2 212 43.4
Lj6g0018793 Lotus japonicus HOM05D004935 ORTHO05D005676 2.1e-28 130.2 195 44.6
arahy.Tifrunner.gnm1.ann1.5XP26J Arachis hypogaea HOM05D004935 ORTHO05D005676 2.7e-28 129.8 192 43.2
arahy.Tifrunner.gnm1.ann1.63R0A2 Arachis hypogaea HOM05D004935 ORTHO05D005676 2.7e-28 129.8 195 48.2
CiPaw.04G048500 Carya illinoinensis HOM05D004935 ORTHO05D005676 3.6e-28 129.4 226 42.0
COL.COLO4_19777 Corchorus olitorius HOM05D004935 ORTHO05D005676 3.6e-28 129.4 202 44.1
Actinidia28792 Actinidia chinensis HOM05D004935 ORTHO05D005676 4.7e-28 129.0 200 42.0
Gorai.001G082900 Gossypium raimondii HOM05D004935 ORTHO05D005676 6.1e-28 128.6 192 47.9
Glyma.11G213800 Glycine max HOM05D004935 ORTHO05D005676 8.0e-28 128.3 195 43.6
Manes.02G079800 Manihot esculenta HOM05D004935 ORTHO05D005676 1.0e-27 127.9 192 45.8
Phvul.001G228000 Phaseolus vulgaris HOM05D004935 ORTHO05D005676 1.0e-27 127.9 194 42.8
SalBow3G4475 Salvia bowleyana HOM05D004935 ORTHO05D005676 1.0e-27 127.9 154 51.3
Gohir.A11G169300 Gossypium hirsutum HOM05D004935 ORTHO05D005676 1.4e-27 127.5 190 46.3
arahy.Tifrunner.gnm1.ann1.8KIW52 Arachis hypogaea HOM05D004935 ORTHO05D005676 1.8e-27 127.1 195 42.6
SGA_v2.0_scaffold45G17134 Striga asiatica HOM05D004935 ORTHO05D005676 2.3e-27 126.7 263 37.3
Cc07_g13020 Coffea canephora HOM05D004935 ORTHO05D005676 3.0e-27 126.3 192 55.2
Actinidia17180 Actinidia chinensis HOM05D004935 ORTHO05D005676 5.2e-27 125.6 191 42.9
Hma1.2p1_0158F.1_g069850 Hydrangea macrophylla HOM05D004935 ORTHO05D005676 5.2e-27 125.6 222 38.7
Nn4g24526 Nelumbo nucifera HOM05D004935 ORTHO05D005676 5.2e-27 125.6 234 41.9
Gorai.007G188100 Gossypium raimondii HOM05D004935 ORTHO05D005676 8.8e-27 124.8 190 45.8
arahy.Tifrunner.gnm1.ann1.PKWW5Q Arachis hypogaea HOM05D004935 ORTHO05D005676 1.2e-26 124.4 154 50.6
Gohir.D11G175500 Gossypium hirsutum HOM05D004935 ORTHO05D005676 1.5e-26 124.0 190 45.8
Ca_06292_v3 Cicer arietinum L. HOM05D004935 ORTHO05D005676 2.0e-26 123.6 196 42.3
Lalb_Chr17g0345951 Lupinus albus HOM05D004935 ORTHO05D005676 2.0e-26 123.6 194 42.3
VMungo1383G0526 Vigna mungo HOM05D004935 ORTHO05D005676 2.0e-26 123.6 190 43.7
Migut.K01110 Erythranthe guttata HOM05D004935 ORTHO05D005676 2.6e-26 123.2 221 40.3
Atru.chr1.1949 Acer truncatum HOM05D004935 ORTHO05D005676 3.4e-26 122.9 163 48.5
Manes.01G121800 Manihot esculenta HOM05D004935 ORTHO05D005676 3.4e-26 122.9 205 43.9
Peaxi162Scf00078g00178 Petunia axillaris HOM05D004935 ORTHO05D005676 3.4e-26 122.9 239 39.7
QL02p059972 Quercus lobata HOM05D004935 ORTHO05D005676 5.7e-26 122.1 234 39.3
Lalb_Chr10g0104161 Lupinus albus HOM05D004935 ORTHO05D005676 7.5e-26 121.7 197 42.1
PGSC0003DMG400013258 Solanum tuberosum HOM05D004935 ORTHO05D005676 1.7e-25 120.6 232 38.8
Sopen11g006600 Solanum pennellii HOM05D004935 ORTHO05D005676 2.2e-25 120.2 233 40.3
TAR622G0462 Trochodendron aralioides HOM05D004935 ORTHO05D005676 2.2e-25 120.2 232 38.8
Solyc11g011760.3 Solanum lycopersicum HOM05D004935 ORTHO05D005676 4.9e-25 119.0 234 40.2
TAR629G3076 Trochodendron aralioides HOM05D004935 ORTHO05D005676 1.4e-24 117.5 235 51.1
BraA03t10111Z Brassica rapa HOM05D000423 ORTHO05D005676 1.8e-24 117.1 157 49.7
MELO3C025122.2 Cucumis melo HOM05D004935 ORTHO05D005676 3.1e-24 116.3 227 36.1
CsaV3_5G024270 Cucumis sativus L. HOM05D004935 ORTHO05D005676 4.1e-24 115.9 227 35.7
PSO170G5471 Papaver somniferum HOM05D004935 ORTHO05D005676 4.1e-24 115.9 219 38.8
MBI13_g35399_MAGBIO Magnolia biondii HOM05D004935 ORTHO05D005676 9.2e-24 114.8 225 38.2
Psat2g014520 Pisum sativum HOM05D004935 ORTHO05D005676 9.2e-24 114.8 119 59.7
BolC3t13402H Brassica oleracea HOM05D004935 ORTHO05D005676 1.2e-23 114.4 152 48.0
PGR042G3611 Punica granatum HOM05D004935 ORTHO05D005676 1.2e-23 114.4 146 49.3
Sp6g27610 Schrenkiella parvula HOM05D004935 ORTHO05D005676 1.2e-23 114.4 119 59.7
TWI53G1040 Tripterygium wilfordii HOM05D004935 ORTHO05D005676 1.2e-23 114.4 194 42.8
MSTRG.3688 Avicennia marina HOM05D004935 ORTHO05D005676 1.6e-23 114.0 225 39.1
BcaB08g36840 Brassica carinata HOM05D004935 ORTHO05D005676 2.7e-23 113.2 142 52.8
Thhalv10014473m.g Eutrema salsugineum HOM05D004935 ORTHO05D005676 3.5e-23 112.8 117 59.0
THA.LOC104820912 Tarenaya hassleriana HOM05D004935 ORTHO05D005676 3.5e-23 112.8 145 53.8
AL6G27510 Arabidopsis lyrata HOM05D004935 ORTHO05D005676 5.9e-23 112.1 192 42.2
C03p09070 Brassica napus HOM05D004935 ORTHO05D005676 5.9e-23 112.1 152 47.4
ClCG01G008740 Citrullus lanatus HOM05D004935 ORTHO05D005676 5.9e-23 112.1 227 36.1
LjContig00141g0002036 Lotus japonicus HOM05D004935 ORTHO05D005676 7.7e-23 111.7 223 39.5
Lj2A514G44 Lonicera japonica HOM05D004935 ORTHO05D005676 1.0e-22 111.3 253 35.6
Lalb_Chr18g0053611 Lupinus albus HOM05D004935 ORTHO05D005676 1.0e-22 111.3 195 37.9
BcaC03g18499 Brassica carinata HOM05D004935 ORTHO05D005676 1.7e-22 110.5 162 50.6
A10p22660 Brassica napus HOM05D004935 ORTHO05D005676 2.3e-22 110.2 118 59.3
BraA10t44327Z Brassica rapa HOM05D004935 ORTHO05D005676 2.3e-22 110.2 118 59.3
PSO407G0171 Papaver somniferum HOM05D004935 ORTHO05D005676 2.3e-22 110.2 231 37.2
unitig_748.g8451 Utricularia gibba HOM05D004935 ORTHO05D005676 2.3e-22 110.2 217 39.2
HPP92_017642 Vanilla planifolia HOM05D004935 ORTHO05D005676 2.9e-22 109.8 188 41.5
A03p07850 Brassica napus HOM05D004935 ORTHO05D005676 5.0e-22 109.0 118 56.8
A02p03620 Brassica napus HOM05D004935 ORTHO05D005676 6.6e-22 108.6 155 51.0
C09p60610 Brassica napus HOM05D004935 ORTHO05D005676 6.6e-22 108.6 117 58.1
BolC9t58894H Brassica oleracea HOM05D004935 ORTHO05D005676 6.6e-22 108.6 117 58.1
BraA02t05331Z Brassica rapa HOM05D004935 ORTHO05D005676 6.6e-22 108.6 155 51.0
BcaC03g18497 Brassica carinata HOM05D004935 ORTHO05D005676 8.6e-22 108.2 122 56.6
C02p08410 Brassica napus HOM05D004935 ORTHO05D005676 8.6e-22 108.2 122 56.6
BolC2t06759H Brassica oleracea HOM05D004935 ORTHO05D005676 8.6e-22 108.2 122 56.6
AT5G16550 Arabidopsis thaliana HOM05D004935 ORTHO05D005676 1.1e-21 107.8 217 39.2
Aa31LG11G13100 Aethionema arabicum HOM05D004935 ORTHO05D005676 1.5e-21 107.5 117 57.3
Medtr5g077280 Medicago truncatula HOM05D004935 ORTHO05D005676 4.3e-21 105.9 195 39.5
BcaB01g04976 Brassica carinata HOM05D004935 ORTHO05D005676 5.6e-21 105.5 118 55.1
Carub.0006s1475 Capsella rubella HOM05D004935 ORTHO05D005676 9.5e-21 104.8 119 54.6
Psat2g044600 Pisum sativum HOM05D004935 ORTHO05D005676 1.2e-20 104.4 215 37.2
AL3G36180 Arabidopsis lyrata HOM05D004935 ORTHO05D005676 2.1e-20 103.6 114 56.1
BcaC04g18869 Brassica carinata HOM05D004935 ORTHO05D005676 2.8e-20 103.2 161 46.0
Lsat_1_v5_gn_8_111520 Lactuca sativa HOM05D004935 ORTHO05D005676 4.7e-20 102.4 164 45.7
Zm00001eb041900 Zea mays HOM05D004935 ORTHO05D005676 4.7e-20 102.4 223 36.3
Zm00001eb179280 Zea mays HOM05D004935 ORTHO05D005676 8.0e-20 101.7 223 36.3
TPR.G9990 Trifolium pratense HOM05D004935 ORTHO05D005676 1.8e-19 100.5 223 36.3
AL92U10070 Arabidopsis lyrata HOM05D004935 ORTHO05D005676 8.9e-19 98.2 143 49.7
CDE11G1189 Ceratophyllum demersum HOM05D004935 ORTHO05D005676 1.2e-18 97.8 186 38.2
Phvul.008G238800 Phaseolus vulgaris HOM05D004935 ORTHO05D005676 2.2e-17 93.6 195 37.9
Glyma.02G242200 Glycine max HOM05D004935 ORTHO05D005676 8.3e-17 91.7 218 34.4
HanXRQChr15g0489811 Helianthus annuus HOM05D004935 ORTHO05D005676 8.3e-17 91.7 155 43.2
CDE05G2820 Ceratophyllum demersum HOM05D004935 ORTHO05D005676 3.2e-16 89.7 120 50.0
GSVIVG01026318001 Vitis vinifera HOM05D004935 ORTHO05D005676 7.0e-16 88.6 65 80.0
VMungo0647G1435 Vigna mungo HOM05D004935 ORTHO05D005676 5.9e-15 85.5 223 34.1
AL6G14310 Arabidopsis lyrata HOM05D000097 ORTHO05D005676 1.7e-14 84.0 108 53.7
Sed0000771 Sechium edule HOM05D004935 ORTHO05D005676 3.0e-14 83.2 228 36.4
ECA246G1322 Erigeron canadensis HOM05D004935 ORTHO05D005676 1.6e-12 77.4 67 70.1
Oeu014715.1 Olea europaea HOM05D004935 ORTHO05D005676 6.2e-12 75.5 130 39.2
FAN19G0113 Fragaria x ananassa HOM05D004935 ORTHO05D005676 1.4e-11 74.3 74 55.4
AagrBONN_evm.TU.Sc2ySwM_117.2252 Anthoceros agrestis HOM05D004935 ORTHO05D005676 8.9e-11 71.6 90 47.8
CARHR196690 Cardamine hirsuta HOM05D004935 ORTHO05D005676 8.9e-11 71.6 97 49.5
Haze_14300 Corylus avellana HOM05D004935 ORTHO05D005676 1.5e-10 70.9 278 36.7
Zm00001eb099130 Zea mays HOM05D004935 ORTHO05D005676 1.4e-08 64.3 78 48.7
Cpa.g.sc178.1 Carica papaya HOM05D004935 ORTHO05D005676 2.4e-08 63.5 105 39.0
Mapoly0035s0070 Marchantia polymorpha HOM05D004935 ORTHO05D005676 7.8e-07 58.5 118 35.6


User provided reference genes

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