Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc11g0004500 Simmondsia chinensis HOM05D004546 ORTHO05D005419 4.7e-242 840.9 454 100.0
Hma1.2p1_1482F.1_g286200 Hydrangea macrophylla HOM05D004546 ORTHO05D005419 6.5e-127 458.4 448 53.1
GSVIVG01035964001 Vitis vinifera HOM05D004546 ORTHO05D005419 6.1e-125 451.8 436 55.0
Cfa005513 Carpinus fangiana HOM05D004546 ORTHO05D005419 1.8e-124 450.3 441 54.2
EL10Ac2g02703 Beta vulgaris HOM05D004546 ORTHO05D005419 9.7e-123 444.5 444 52.3
PGSC0003DMG400010002 Solanum tuberosum HOM05D004546 ORTHO05D005419 8.2e-122 441.4 444 52.9
Duzib177G0829 Durio zibethinus HOM05D004546 ORTHO05D005419 1.6e-120 437.2 448 53.1
vmacro01757 Vaccinium macrocarpon HOM05D004546 ORTHO05D005419 1.6e-120 437.2 448 51.3
CSS0049092 Camellia sinensis var. sinensis HOM05D004546 ORTHO05D005419 1.7e-119 433.7 418 53.3
Thecc.05G227600 Theobroma cacao HOM05D004546 ORTHO05D005419 5.0e-119 432.2 437 52.9
Rhsim09G0016100 Rhododendron simsii HOM05D004546 ORTHO05D005419 2.7e-117 426.4 425 53.6
TAR628G0514 Trochodendron aralioides HOM05D004546 ORTHO05D005419 4.0e-116 422.5 391 56.0
Rhsim11G0128800 Rhododendron simsii HOM05D004546 ORTHO05D005419 3.4e-115 419.5 467 49.9
Ah.14g086060 Amaranthus hybridus HOM05D004546 ORTHO05D005419 9.8e-115 417.9 435 51.0
Sabra17G0029200 Salix brachista HOM05D004546 ORTHO05D005419 4.8e-114 415.6 442 50.9
Lalb_Chr12g0204461 Lupinus albus HOM05D004546 ORTHO05D005419 6.6e-111 405.2 440 50.0
DCAR_006706 Daucus carota HOM05D004546 ORTHO05D005419 1.5e-110 404.1 432 50.5
Potri.017G043000 Populus trichocarpa HOM05D004546 ORTHO05D005419 1.9e-110 403.7 441 49.2
Sed0013794 Sechium edule HOM05D004546 ORTHO05D005419 1.9e-110 403.7 437 48.5
Gorai.001G269700 Gossypium raimondii HOM05D004546 ORTHO05D005419 1.6e-109 400.6 447 49.9
THA.LOC104809617 Tarenaya hassleriana HOM05D004546 ORTHO05D005419 2.1e-109 400.2 437 49.2
Prupe.1G570900 Prunus persica HOM05D004546 ORTHO05D005419 2.8e-109 399.8 444 48.9
Migut.B00830 Erythranthe guttata HOM05D004546 ORTHO05D005419 4.0e-108 396.0 437 48.5
MSTRG.16518 Avicennia marina HOM05D004546 ORTHO05D005419 8.9e-108 394.8 440 49.8
Potri.007G116200 Populus trichocarpa HOM05D004546 ORTHO05D005419 1.5e-107 394.0 437 48.7
Haze_01703 Corylus avellana HOM05D004546 ORTHO05D005419 4.4e-107 392.5 546 42.9
CiPaw.05G045000 Carya illinoinensis HOM05D004546 ORTHO05D005419 2.8e-106 389.8 376 54.3
Aa31LG2G9580 Aethionema arabicum HOM05D004640 ORTHO05D005489 4.9e-106 389.0 425 49.4
SHI16664 Sapria himalayana HOM05D004546 ORTHO05D005419 1.1e-105 387.9 431 48.3
CsaV3_5G025650 Cucumis sativus L. HOM05D004546 ORTHO05D005419 1.8e-105 387.1 437 47.6
PSO210G6794 Papaver somniferum HOM05D004546 ORTHO05D005419 9.2e-105 384.8 435 47.6
Nitab4.5_0000753g0130 Nicotiana tabacum HOM05D004546 ORTHO05D005419 2.7e-104 383.3 424 47.6
Peaxi162Scf00152g01427 Petunia axillaris HOM05D004546 ORTHO05D005419 2.7e-104 383.3 435 47.6
CARHR052070 Cardamine hirsuta HOM05D004546 ORTHO05D005419 1.0e-103 381.3 438 48.2
Aqoxy6G00209 Aquilegia oxysepala HOM05D004546 ORTHO05D005419 1.3e-103 380.9 442 47.1
PSO210G7371 Papaver somniferum HOM05D004546 ORTHO05D005419 1.7e-103 380.6 435 46.9
Nitab4.5_0003652g0050 Nicotiana tabacum HOM05D004546 ORTHO05D005419 2.9e-103 379.8 424 47.2
Atru.chr8.1488 Acer truncatum HOM05D004546 ORTHO05D005419 6.6e-103 378.6 435 48.0
Sopen10g008970 Solanum pennellii HOM05D004546 ORTHO05D005419 1.1e-102 377.9 440 47.5
Sp2g03510 Schrenkiella parvula HOM05D004546 ORTHO05D005419 2.5e-102 376.7 437 48.1
Gohir.D06G191600 Gossypium hirsutum HOM05D004546 ORTHO05D005419 7.3e-102 375.2 447 48.1
AUR62014224 Chenopodium quinoa HOM05D004546 ORTHO05D005419 1.2e-101 374.4 428 48.1
Ciclev10015244m.g Citrus clementina HOM05D004546 ORTHO05D005419 3.6e-101 372.9 441 46.9
Dinv24291 Davidia involucrata HOM05D004546 ORTHO05D005419 3.6e-101 372.9 436 48.9
FAN02G2941 Fragaria x ananassa HOM05D004546 ORTHO05D005419 1.4e-100 370.9 436 46.8
Phvul.002G249700 Phaseolus vulgaris HOM05D004546 ORTHO05D005419 1.8e-100 370.5 438 46.6
ECA234G1828 Erigeron canadensis HOM05D004546 ORTHO05D005419 6.8e-100 368.6 446 44.8
ClCG03G000010 Citrullus lanatus HOM05D004546 ORTHO05D005419 1.5e-99 367.5 473 43.1
QL02p098920 Quercus lobata HOM05D004546 ORTHO05D005419 2.6e-99 366.7 444 45.3
BolC4t24246H Brassica oleracea HOM05D004546 ORTHO05D005419 1.3e-98 364.4 446 46.4
C03p25600 Brassica napus HOM05D004546 ORTHO05D005419 8.3e-98 361.7 444 47.5
Actinidia00204 Actinidia chinensis HOM05D004546 ORTHO05D005419 1.1e-97 361.3 436 46.8
Solyc10g019040.2 Solanum lycopersicum HOM05D004546 ORTHO05D005419 1.4e-97 360.9 440 46.4
AUR62041118 Chenopodium quinoa HOM05D004546 ORTHO05D005419 1.9e-97 360.5 423 47.3
A03p21620 Brassica napus HOM05D004546 ORTHO05D005419 1.6e-96 357.5 453 46.1
BraA03t11397Z Brassica rapa HOM05D004546 ORTHO05D005419 1.6e-96 357.5 453 46.1
Eucgr.G00575 Eucalyptus grandis HOM05D004546 ORTHO05D005419 1.6e-96 357.5 437 43.9
BolC3t14948H Brassica oleracea HOM05D004546 ORTHO05D005419 2.0e-96 357.1 453 46.6
AT1G61000 Arabidopsis thaliana HOM05D004546 ORTHO05D005419 2.7e-96 356.7 437 45.3
Lj4g0018170 Lotus japonicus HOM05D004546 ORTHO05D005419 6.0e-96 355.5 441 47.2
SGA_v2.0_scaffold110G31325 Striga asiatica HOM05D004546 ORTHO05D005419 3.0e-95 353.2 444 46.4
Cc02_g22580 Coffea canephora HOM05D004546 ORTHO05D005419 3.9e-95 352.8 432 44.9
Carub.0002s0420 Capsella rubella HOM05D004546 ORTHO05D005419 5.0e-95 352.4 429 46.2
MD08G1233000 Malus domestica HOM05D004546 ORTHO05D005419 8.6e-95 351.7 437 45.5
Rhsim09G0048700 Rhododendron simsii HOM05D004546 ORTHO05D005419 1.5e-94 350.9 328 55.5
VMungo0251G0798 Vigna mungo HOM05D004546 ORTHO05D005419 1.5e-94 350.9 466 41.8
HanXRQChr10g0290511 Helianthus annuus HOM05D004546 ORTHO05D005419 3.3e-94 349.7 447 45.4
Glyma.05G169000 Glycine max HOM05D004546 ORTHO05D005419 4.3e-94 349.4 439 45.3
RcHm_v2.0_Chr7g0222021 Rosa chinensis HOM05D004546 ORTHO05D005419 9.5e-94 348.2 436 44.0
Lsat_1_v5_gn_5_105520 Lactuca sativa HOM05D004546 ORTHO05D005419 6.2e-93 345.5 437 43.9
GSVIVG01022895001 Vitis vinifera HOM05D004546 ORTHO05D005419 1.8e-92 344.0 436 45.2
TPR.G23101 Trifolium pratense HOM05D004546 ORTHO05D005419 4.0e-92 342.8 460 44.6
C04p25630 Brassica napus HOM05D004546 ORTHO05D005419 1.5e-91 340.9 495 41.6
Lj5A252T47 Lonicera japonica HOM05D004546 ORTHO05D005419 3.4e-91 339.7 443 43.1
CANSAT54G1257 Cannabis sativa HOM05D004546 ORTHO05D005419 4.4e-91 339.3 369 50.7
FvH4_6g25020 Fragaria vesca HOM05D004546 ORTHO05D005419 7.5e-91 338.6 436 43.6
MD15G1425300 Malus domestica HOM05D004546 ORTHO05D005419 9.8e-91 338.2 437 44.2
Hund15499 Selenicereus undatus HOM05D004546 ORTHO05D005419 1.3e-90 337.8 323 54.8
Thhalv10023463m.g Eutrema salsugineum HOM05D004546 ORTHO05D005419 3.7e-90 336.3 437 43.5
Gohir.A06G184800 Gossypium hirsutum HOM05D004546 ORTHO05D005419 8.3e-90 335.1 416 46.6
CAN.G1330.18 Capsicum annuum HOM05D004546 ORTHO05D005419 3.2e-89 333.2 444 43.5
Gorai.010G224800 Gossypium raimondii HOM05D004546 ORTHO05D005419 3.2e-89 333.2 447 44.1
COL.COLO4_05853 Corchorus olitorius HOM05D004546 ORTHO05D005294 6.0e-88 328.9 441 45.6
Sabra07G0094500 Salix brachista HOM05D004546 ORTHO05D005419 6.0e-88 328.9 592 36.7
FAN05G4088 Fragaria x ananassa HOM05D004546 ORTHO05D005419 3.3e-86 323.2 458 41.3
FAN14G0315 Fragaria x ananassa HOM05D004546 ORTHO05D005419 4.3e-86 322.8 463 41.5
Manes.10G066500 Manihot esculenta HOM05D004546 ORTHO05D005419 4.7e-85 319.3 437 41.9
Peaxi162Scf00152g01529 Petunia axillaris HOM05D004546 ORTHO05D005419 4.7e-85 319.3 447 42.7
Gohir.D07G234200 Gossypium hirsutum HOM05D004546 ORTHO05D005419 5.2e-84 315.8 447 42.5
FAN06G4932 Fragaria x ananassa HOM05D004546 ORTHO05D005419 8.9e-84 315.1 436 42.7
FvH4_7g06682 Fragaria vesca HOM05D004546 ORTHO05D005419 1.2e-83 314.7 436 42.4
arahy.Tifrunner.gnm1.ann1.SB4BQ5 Arachis hypogaea HOM05D004546 ORTHO05D005419 2.9e-82 310.1 440 41.1
Gohir.A07G227000 Gossypium hirsutum HOM05D004546 ORTHO05D005419 8.3e-82 308.5 416 43.5
BcaC02g10598 Brassica carinata HOM05D004546 ORTHO05D005419 5.4e-81 305.8 462 40.0
Cpa.g.sc8.264 Carica papaya HOM05D004546 ORTHO05D005419 1.6e-80 304.3 302 53.0
Medtr8g088840 Medicago truncatula HOM05D004546 ORTHO05D005419 2.7e-80 303.5 435 40.9
TWI59G0103 Tripterygium wilfordii HOM05D004546 ORTHO05D005419 4.6e-80 302.8 437 41.4
Psat7g062000 Pisum sativum HOM05D004546 ORTHO05D005419 2.3e-79 300.4 435 41.4
arahy.Tifrunner.gnm1.ann1.QA5S84 Arachis hypogaea HOM05D004546 ORTHO05D005419 8.6e-79 298.5 440 40.9
Atru.chr13.2649 Acer truncatum HOM05D004546 ORTHO05D005419 4.3e-78 296.2 346 48.3
PGR042G1236 Punica granatum HOM05D004546 ORTHO05D005419 2.8e-77 293.5 441 39.2
Ca_17808_v3 Cicer arietinum L. HOM05D004546 ORTHO05D005419 5.2e-76 289.3 442 39.4
CDE08G0494 Ceratophyllum demersum HOM05D004546 ORTHO05D005419 1.3e-74 284.6 403 40.0
HPP92_000323 Vanilla planifolia HOM05D004546 ORTHO05D005419 2.9e-74 283.5 442 38.2
Carub.0002s0419 Capsella rubella HOM05D004546 ORTHO05D005419 1.1e-73 281.6 457 38.7
Medtr4g049650 Medicago truncatula HOM05D004546 ORTHO05D005419 1.9e-73 280.8 386 44.8
RcHm_v2.0_Chr1g0336301 Rosa chinensis HOM05D004546 ORTHO05D005419 1.9e-73 280.8 348 44.8
COL.COLO4_10577 Corchorus olitorius HOM05D004546 ORTHO05D005419 4.3e-70 269.6 445 40.2
Oeu033122.2 Olea europaea HOM05D004546 ORTHO05D005419 5.3e-68 262.7 247 52.6
Nn1g08777 Nelumbo nucifera HOM05D004546 ORTHO05D005419 1.7e-66 257.7 350 44.0
Medtr8g088800 Medicago truncatula HOM05D004546 ORTHO05D005419 8.4e-66 255.4 418 39.7
Os03g0577100 Oryza sativa ssp. japonica HOM05D004546 ORTHO05D005419 7.8e-64 248.8 456 35.5
Os08g0163100 Oryza sativa ssp. japonica HOM05D004546 ORTHO05D005419 2.2e-58 230.7 457 32.8
TPR.G28353 Trifolium pratense HOM05D004546 ORTHO05D005419 2.9e-58 230.3 287 44.6
AL2G15450 Arabidopsis lyrata HOM05D004546 ORTHO05D005419 1.4e-57 228.0 306 44.4
unitig_8.g2954 Utricularia gibba HOM05D004546 ORTHO05D005419 2.4e-57 227.3 440 34.8
FAN03G2280 Fragaria x ananassa HOM05D004546 ORTHO05D005419 2.7e-56 223.8 609 29.4
Lsat_1_v5_gn_8_80961 Lactuca sativa HOM05D004546 ORTHO05D005419 1.5e-54 218.0 231 49.4
VMungo0251G0767 Vigna mungo HOM05D004546 ORTHO05D005419 1.3e-53 214.9 458 32.1
MELO3C002916.2 Cucumis melo HOM05D004546 ORTHO05D005419 4.0e-52 209.9 220 54.1
Eucgr.L03482 Eucalyptus grandis HOM05D004546 ORTHO05D005419 6.7e-47 192.6 220 44.5
COL.COLO4_13071 Corchorus olitorius HOM05D004546 ORTHO05D005419 8.7e-47 192.2 206 46.1
ATR0177G064 Amborella trichopoda HOM05D004546 ORTHO05D005419 2.8e-45 187.2 341 35.2
TPR.G38758 Trifolium pratense HOM05D004546 ORTHO05D005419 1.4e-44 184.9 254 40.9
Rhsim09G0048900 Rhododendron simsii HOM05D004546 ORTHO05D005419 1.1e-41 175.3 413 32.4
Oeu027800.1 Olea europaea HOM05D004546 ORTHO05D005419 6.0e-40 169.5 176 53.4
C05p50930 Brassica napus HOM05D004546 ORTHO05D005419 8.2e-37 159.1 206 41.7
TPR.G31804 Trifolium pratense HOM05D004546 ORTHO05D005419 3.1e-36 157.1 213 46.9
SEGI_32079 Sequoiadendron giganteum HOM05D004546 ORTHO05D005419 2.6e-35 154.1 436 29.1
Aqoxy7G01614 Aquilegia oxysepala HOM05D004546 ORTHO05D005419 6.7e-31 139.4 374 29.9
Zm00001eb064460 Zea mays HOM05D004546 ORTHO05D005419 6.7e-31 139.4 408 28.4
FAN10G1533 Fragaria x ananassa HOM05D004546 ORTHO05D005419 1.5e-30 138.3 424 28.3
Hund15500 Selenicereus undatus HOM05D004546 ORTHO05D005419 2.6e-27 127.5 136 51.5
AagrBONN_evm.TU.Sc2ySwM_117.2656 Anthoceros agrestis HOM05D004546 ORTHO05D005419 5.0e-26 123.2 253 31.6
PSO210G1504 Papaver somniferum HOM05D004546 ORTHO05D005419 1.6e-24 118.2 149 44.3
TPR.G37878 Trifolium pratense HOM05D004546 ORTHO05D005419 3.0e-23 114.0 159 39.0
Atru.chr4.610 Acer truncatum HOM05D004546 ORTHO05D005419 7.4e-22 109.4 204 31.9
C05p50920 Brassica napus HOM05D004546 ORTHO05D005419 7.4e-22 109.4 155 40.6
CAN.G1882.2 Capsicum annuum HOM05D004546 ORTHO05D005419 3.7e-21 107.1 115 51.3
MD08G1232500 Malus domestica HOM05D004546 ORTHO05D005419 9.4e-17 92.4 101 43.6
RhsimUnG0234900 Rhododendron simsii HOM05D004546 ORTHO05D005419 1.6e-16 91.7 98 44.9
Rhsim09G0049000 Rhododendron simsii HOM05D004546 ORTHO05D005419 1.1e-14 85.5 73 49.3
Atru.chr4.605 Acer truncatum HOM05D005324 ORTHO05D001185 5.7e-14 83.2 105 42.9
CAN.G1882.3 Capsicum annuum HOM05D004546 ORTHO05D005419 7.4e-14 82.8 81 56.8
Rhsim09G0048500 Rhododendron simsii HOM05D004546 ORTHO05D005419 1.2e-11 75.5 449 24.3
TPR.G7268 Trifolium pratense HOM05D004546 ORTHO05D005419 4.5e-11 73.6 74 54.1
TPR.G18400 Trifolium pratense HOM05D004546 ORTHO05D005419 5.9e-11 73.2 66 60.6
TPR.G37996 Trifolium pratense HOM05D004546 ORTHO05D005419 2.9e-10 70.9 181 29.3
MBI17_g42496_MAGBIO Magnolia biondii HOM05D004546 ORTHO05D005419 4.0e-07 60.5 84 33.3
SMO118G0303 Selaginella moellendorffii HOM05D044143 ORTHO05D050877 8.8e-07 59.3 224 25.9
Mapoly0004s0096 Marchantia polymorpha HOM05D004546 ORTHO05D005419 7.5e-06 56.2 433 20.8


User provided reference genes

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