Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc11g0004490 Simmondsia chinensis HOM05D007161 ORTHO05D009103 3.1e-78 295.4 192 100.0
Hund02576 Selenicereus undatus HOM05D007161 ORTHO05D009103 5.0e-36 155.2 167 73.7
THA.LOC104801155 Tarenaya hassleriana HOM05D007161 ORTHO05D009103 2.3e-33 146.4 165 74.5
Ciclev10022373m.g Citrus clementina HOM05D007161 ORTHO05D009103 8.8e-33 144.4 165 72.7
PGR083G0667 Punica granatum HOM05D007161 ORTHO05D009103 9.7e-32 141.0 171 67.8
CAN.G1228.16 Capsicum annuum HOM05D007161 ORTHO05D009103 1.3e-31 140.6 163 69.9
EL10Ac5g11145 Beta vulgaris HOM05D007161 ORTHO05D009103 2.8e-31 139.4 176 67.0
MSTRG.4482 Avicennia marina HOM05D007161 ORTHO05D009103 9.1e-30 134.4 165 67.3
Cc00_g12110 Coffea canephora HOM05D007161 ORTHO05D009103 1.2e-29 134.0 160 70.0
MSTRG.9598 Avicennia marina HOM05D007161 ORTHO05D009103 2.0e-29 133.3 165 70.9
Gohir.A07G068000 Gossypium hirsutum HOM05D007161 ORTHO05D009103 5.9e-29 131.7 166 72.3
COL.COLO4_24339 Corchorus olitorius HOM05D007161 ORTHO05D009103 7.7e-29 131.3 162 72.8
Dinv22772 Davidia involucrata HOM05D007161 ORTHO05D009103 7.7e-29 131.3 163 67.5
CsaV3_1G006050 Cucumis sativus L. HOM05D007161 ORTHO05D009103 1.0e-28 131.0 169 69.2
QL10p019814 Quercus lobata HOM05D007161 ORTHO05D009103 1.0e-28 131.0 164 67.7
Thecc.03G103000 Theobroma cacao HOM05D007161 ORTHO05D009103 1.0e-28 131.0 165 72.1
MELO3C002036.2 Cucumis melo HOM05D007161 ORTHO05D009103 1.3e-28 130.6 169 68.6
Nitab4.5_0001485g0090 Nicotiana tabacum HOM05D007161 ORTHO05D009103 1.3e-28 130.6 162 68.5
Sopen03g034090 Solanum pennellii HOM05D007161 ORTHO05D009103 1.7e-28 130.2 165 69.1
GSVIVG01008106001 Vitis vinifera HOM05D007161 ORTHO05D009103 2.2e-28 129.8 158 70.9
TAR629G0203 Trochodendron aralioides HOM05D007161 ORTHO05D009103 2.9e-28 129.4 165 69.1
Ah.02g114100 Amaranthus hybridus HOM05D007161 ORTHO05D009103 3.8e-28 129.0 166 69.3
Gohir.D07G072600 Gossypium hirsutum HOM05D007161 ORTHO05D009103 5.0e-28 128.6 166 71.1
Manes.06G083700 Manihot esculenta HOM05D007161 ORTHO05D009103 5.0e-28 128.6 160 70.6
Oeu017188.1 Olea europaea HOM05D007161 ORTHO05D009103 5.0e-28 128.6 138 73.9
Nn4g23440 Nelumbo nucifera HOM05D007161 ORTHO05D009103 6.5e-28 128.3 165 68.5
Gorai.001G076800 Gossypium raimondii HOM05D007161 ORTHO05D009103 8.5e-28 127.9 166 71.1
Atru.chr9.557 Acer truncatum HOM05D007161 ORTHO05D009103 1.1e-27 127.5 165 70.3
arahy.Tifrunner.gnm1.ann1.N0KAAL Arachis hypogaea HOM05D007161 ORTHO05D009103 1.1e-27 127.5 165 66.7
CiPaw.11G054500 Carya illinoinensis HOM05D007161 ORTHO05D009103 1.1e-27 127.5 190 61.1
Haze_07737 Corylus avellana HOM05D007161 ORTHO05D009103 1.1e-27 127.5 162 67.9
ClCG04G011740 Citrullus lanatus HOM05D007161 ORTHO05D009103 1.5e-27 127.1 169 68.0
Cfa019345 Carpinus fangiana HOM05D007161 ORTHO05D009103 2.5e-27 126.3 162 67.3
arahy.Tifrunner.gnm1.ann1.KM320G Arachis hypogaea HOM05D007161 ORTHO05D009103 3.2e-27 125.9 165 66.1
ATR0177G008 Amborella trichopoda HOM05D007161 ORTHO05D009103 4.2e-27 125.6 167 66.5
Potri.015G058600 Populus trichocarpa HOM05D007161 ORTHO05D009103 9.4e-27 124.4 160 69.4
PGSC0003DMG400024633 Solanum tuberosum HOM05D007161 ORTHO05D009103 2.1e-26 123.2 165 66.7
Duzib084G1357 Durio zibethinus HOM05D007161 ORTHO05D009103 3.6e-26 122.5 151 74.2
Sed0004238 Sechium edule HOM05D007161 ORTHO05D009103 3.6e-26 122.5 166 68.1
Glyma.04G161600 Glycine max HOM05D007161 ORTHO05D009103 1.0e-25 120.9 162 66.0
CSS0009196 Camellia sinensis var. sinensis HOM05D007161 ORTHO05D009103 1.4e-25 120.6 144 72.2
Eucgr.B00604 Eucalyptus grandis HOM05D007161 ORTHO05D009103 1.4e-25 120.6 166 66.9
CSS0029825 Camellia sinensis var. sinensis HOM05D007161 ORTHO05D009103 2.3e-25 119.8 138 74.6
Solyc03g115020.3 Solanum lycopersicum HOM05D007161 ORTHO05D009103 3.0e-25 119.4 162 68.5
Phvul.009G202100 Phaseolus vulgaris HOM05D007161 ORTHO05D009103 1.5e-24 117.1 162 64.8
CDE05G0262 Ceratophyllum demersum HOM05D007161 ORTHO05D009103 2.0e-24 116.7 195 60.5
Glyma.06G204200 Glycine max HOM05D007161 ORTHO05D009103 2.0e-24 116.7 162 65.4
Rhsim08G0144900 Rhododendron simsii HOM05D007161 ORTHO05D009103 2.0e-24 116.7 164 65.2
A03p03560 Brassica napus HOM05D007161 ORTHO05D009103 7.5e-24 114.8 165 66.7
BraA03t09706Z Brassica rapa HOM05D007161 ORTHO05D009103 7.5e-24 114.8 165 66.7
TPR.G12153 Trifolium pratense HOM05D007161 ORTHO05D009103 7.5e-24 114.8 162 67.3
BcaB01g05640 Brassica carinata HOM05D007161 ORTHO05D009103 9.8e-24 114.4 165 66.7
BolC3t12938H Brassica oleracea HOM05D007161 ORTHO05D009103 9.8e-24 114.4 165 66.7
Ca_14363_v3 Cicer arietinum L. HOM05D007161 ORTHO05D009103 9.8e-24 114.4 160 66.9
CANSAT56G0131 Cannabis sativa HOM05D007161 ORTHO05D009103 1.7e-23 113.6 165 63.6
C03p04010 Brassica napus HOM05D007161 ORTHO05D009103 2.2e-23 113.2 165 66.7
PSO478G3435 Papaver somniferum HOM05D007161 ORTHO05D009103 2.8e-23 112.8 176 63.1
Sabra15G0084100 Salix brachista HOM05D007161 ORTHO05D009103 3.7e-23 112.5 190 60.0
Psat5g207080 Pisum sativum HOM05D007161 ORTHO05D009103 1.1e-22 110.9 161 65.2
BcaB01g05681 Brassica carinata HOM05D007161 ORTHO05D009103 1.4e-22 110.5 166 66.3
DCAR_011565 Daucus carota HOM05D007161 ORTHO05D009103 1.4e-22 110.5 165 63.6
PSO017G0728 Papaver somniferum HOM05D007161 ORTHO05D009103 1.4e-22 110.5 180 61.7
Peaxi162Scf00201g00331 Petunia axillaris HOM05D007161 ORTHO05D009103 4.1e-22 109.0 162 64.2
SalBow7G4182 Salvia bowleyana HOM05D007161 ORTHO05D009103 2.0e-21 106.7 162 62.3
TWI81G0640 Tripterygium wilfordii HOM05D007161 ORTHO05D009103 2.0e-21 106.7 165 64.8
Oeu044879.1 Olea europaea HOM05D007161 ORTHO05D009103 2.7e-21 106.3 138 70.3
SGA_v2.0_scaffold42G16039 Striga asiatica HOM05D007161 ORTHO05D009103 2.7e-21 106.3 137 70.8
Zm00001eb029520 Zea mays HOM05D007161 ORTHO05D009103 2.7e-21 106.3 169 59.2
MD06G1225900 Malus domestica HOM05D007161 ORTHO05D009103 3.5e-21 105.9 165 64.8
Medtr3g026020 Medicago truncatula HOM05D007161 ORTHO05D009103 3.5e-21 105.9 161 65.2
Sp6g34900 Schrenkiella parvula HOM05D007161 ORTHO05D009103 3.5e-21 105.9 165 63.0
TWI60G0438 Tripterygium wilfordii HOM05D007161 ORTHO05D009103 5.9e-21 105.1 164 64.6
Prupe.5G206100 Prunus persica HOM05D007161 ORTHO05D009103 7.7e-21 104.8 165 64.2
AUR62008547 Chenopodium quinoa HOM05D007161 ORTHO05D009103 1.7e-20 103.6 185 58.4
Os12g0575000 Oryza sativa ssp. japonica HOM05D007161 ORTHO05D009103 1.7e-20 103.6 186 56.5
MD14G1212800 Malus domestica HOM05D007161 ORTHO05D009103 5.0e-20 102.1 163 63.2
Lj1g0027416 Lotus japonicus HOM05D007161 ORTHO05D009103 8.6e-20 101.3 164 62.2
Carub.0006s0694 Capsella rubella HOM05D007161 ORTHO05D009103 1.9e-19 100.1 163 62.0
vmacro17616 Vaccinium macrocarpon HOM05D007161 ORTHO05D009103 3.3e-19 99.4 126 74.6
RcHm_v2.0_Chr7g0183201 Rosa chinensis HOM05D007161 ORTHO05D009103 4.2e-19 99.0 186 59.7
Migut.D01637 Erythranthe guttata HOM05D007161 ORTHO05D009103 5.5e-19 98.6 165 61.8
CDE02G4042 Ceratophyllum demersum HOM05D005465 ORTHO05D006612 7.2e-19 98.2 165 61.8
AT5G08050 Arabidopsis thaliana HOM05D007161 ORTHO05D009103 9.5e-19 97.8 92 79.3
SEGI_08112 Sequoiadendron giganteum HOM05D007161 ORTHO05D009103 9.5e-19 97.8 171 56.1
Aa31LG3G18490 Aethionema arabicum HOM05D007161 ORTHO05D009103 1.2e-18 97.4 165 59.4
CARHR205130 Cardamine hirsuta HOM05D007161 ORTHO05D009103 2.1e-18 96.7 165 59.4
Thhalv10014904m.g Eutrema salsugineum HOM05D007161 ORTHO05D009103 2.8e-18 96.3 165 62.4
AUR62021546 Chenopodium quinoa HOM05D007161 ORTHO05D009103 3.6e-18 95.9 116 75.9
Lsat_1_v5_gn_5_22381 Lactuca sativa HOM05D007161 ORTHO05D009103 6.1e-18 95.1 119 73.9
AL6G18400 Arabidopsis lyrata HOM05D007161 ORTHO05D009103 1.0e-17 94.4 92 77.2
Lalb_Chr12g0199331 Lupinus albus HOM05D007161 ORTHO05D009103 1.0e-17 94.4 127 72.4
FAN08G2338 Fragaria x ananassa HOM05D007161 ORTHO05D009103 1.4e-17 94.0 139 68.3
FvH4_5g13740 Fragaria vesca HOM05D007161 ORTHO05D009103 3.0e-17 92.8 123 74.8
FAN18G1870 Fragaria x ananassa HOM05D007161 ORTHO05D009103 3.0e-17 92.8 123 74.8
FAN13G1189 Fragaria x ananassa HOM05D007161 ORTHO05D009103 5.2e-17 92.0 130 70.8
HanXRQChr08g0230491 Helianthus annuus HOM05D007161 ORTHO05D009103 6.8e-17 91.7 167 61.1
Nitab4.5_0007356g0010 Nicotiana tabacum HOM05D007161 ORTHO05D009103 6.8e-17 91.7 124 71.8
ECA246G0920 Erigeron canadensis HOM05D007161 ORTHO05D009103 2.0e-16 90.1 165 58.2
Lj5C102G4 Lonicera japonica HOM05D007161 ORTHO05D009103 4.4e-16 89.0 167 56.9
Aqoxy3G03679 Aquilegia oxysepala HOM05D007161 ORTHO05D009103 9.8e-16 87.8 163 58.9
SMO139G0085 Selaginella moellendorffii HOM05D007161 ORTHO05D009103 1.7e-15 87.0 170 52.9
Os11g0460900 Oryza sativa ssp. japonica HOM05D007161 ORTHO05D009103 2.2e-15 86.7 138 39.9
Mapoly0107s0029 Marchantia polymorpha HOM05D007161 ORTHO05D009103 1.1e-14 84.3 126 69.0
HanXRQChr17g0550221 Helianthus annuus HOM05D007161 ORTHO05D009103 1.4e-14 84.0 66 66.7
AagrBONN_evm.TU.Sc2ySwM_344.2890 Anthoceros agrestis HOM05D007161 ORTHO05D009103 3.5e-13 79.3 121 70.2
Pp3c1_19210 Physcomitrium patens HOM05D007161 ORTHO05D009103 3.8e-12 75.9 69 59.4
Actinidia04818 Actinidia chinensis HOM05D007161 ORTHO05D009103 2.1e-10 70.1 123 65.9
unitig_0.g5 Utricularia gibba HOM05D000887 ORTHO05D000908 2.3e-09 66.6 120 66.7
Peaxi162Scf00009g00010 Petunia axillaris HOM05D007161 ORTHO05D009103 3.2e-06 56.2 77 41.6


User provided reference genes

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