Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc11g0004480 Simmondsia chinensis HOM05D004909 ORTHO05D009625 3.7e-185 651.4 318 100.0
Actinidia34900 Actinidia chinensis HOM05D004909 ORTHO05D009316 1.1e-120 437.2 294 73.5
Cc00_g11440 Coffea canephora HOM05D004909 ORTHO05D009625 3.8e-105 385.6 302 64.6
Sc14g0003260 Simmondsia chinensis HOM05D004909 ORTHO05D009625 4.1e-67 259.2 125 99.2
DCAR_032461 Daucus carota HOM05D004909 ORTHO05D009625 1.2e-63 247.7 292 47.9
PGR044G1103 Punica granatum HOM05D004909 ORTHO05D009625 2.1e-63 246.9 288 44.8
PGR004G1782 Punica granatum HOM05D004909 ORTHO05D009625 2.3e-62 243.4 288 44.1
RcHm_v2.0_Chr6g0256711 Rosa chinensis HOM05D004909 ORTHO05D009625 2.3e-62 243.4 310 42.9
AUR62042351 Chenopodium quinoa HOM05D004909 ORTHO05D009316 3.3e-61 239.6 316 46.8
AUR62044036 Chenopodium quinoa HOM05D004909 ORTHO05D009625 3.7e-60 236.1 321 45.8
VMungo1067G0003 Vigna mungo HOM05D004909 ORTHO05D009625 7.0e-59 231.9 306 43.5
EL10Ac7g16727 Beta vulgaris HOM05D004909 ORTHO05D009625 1.5e-58 230.7 305 43.6
SEGI_22240 Sequoiadendron giganteum HOM05D004909 ORTHO05D009316 4.5e-58 229.2 301 41.9
Oeu050987.1 Olea europaea HOM05D004909 ORTHO05D009625 8.0e-55 218.4 250 46.8
Aqoxy2G02242 Aquilegia oxysepala HOM05D004909 ORTHO05D009625 3.9e-54 216.1 247 46.6
AUR62010529 Chenopodium quinoa HOM05D004909 ORTHO05D005619 3.9e-54 216.1 266 45.5
Sed0005050 Sechium edule HOM05D004909 ORTHO05D009316 3.9e-54 216.1 201 54.2
Hma1.2p1_0295F.1_g116730 Hydrangea macrophylla HOM05D004909 ORTHO05D009625 2.2e-52 210.3 167 67.1
Oeu050988.1 Olea europaea HOM05D004909 ORTHO05D009625 9.4e-48 194.9 226 46.9
EL10Ac1g02203 Beta vulgaris HOM05D004909 ORTHO05D009625 1.7e-44 184.1 221 48.0
SHI38062 Sapria himalayana HOM05D004909 ORTHO05D009625 9.1e-43 178.3 290 38.6
Aqoxy3G01129 Aquilegia oxysepala HOM05D004909 ORTHO05D009625 4.2e-40 169.5 203 45.3
CAN.G1001.42 Capsicum annuum HOM05D004909 ORTHO05D009625 2.2e-36 157.1 184 45.7
SHI46715 Sapria himalayana HOM05D004909 ORTHO05D009625 5.9e-34 149.1 257 36.2
SHI49389 Sapria himalayana HOM05D004909 ORTHO05D009625 2.5e-32 143.7 219 40.6
CsaV3_UNG207890 Cucumis sativus L. HOM05D004909 ORTHO05D009625 4.2e-32 142.9 195 45.1
Hma1.2p1_1313F.1_g274950 Hydrangea macrophylla HOM05D004909 ORTHO05D009625 2.1e-31 140.6 84 81.0
SHI49457 Sapria himalayana HOM05D004909 ORTHO05D009625 3.6e-31 139.8 197 44.2
SHI35986 Sapria himalayana HOM05D004909 ORTHO05D009625 4.4e-29 132.9 197 43.1
PSO063G2824 Papaver somniferum HOM05D004909 ORTHO05D009625 1.4e-27 127.9 167 38.9
SHI40430 Sapria himalayana HOM05D004909 ORTHO05D009625 1.8e-27 127.5 206 41.3
CAN.G490.20 Capsicum annuum HOM05D004909 ORTHO05D009625 2.9e-25 120.2 129 53.5
Nitab4.5_0000014g0460 Nicotiana tabacum HOM05D004909 ORTHO05D009625 8.6e-25 118.6 193 36.8
SHI41761 Sapria himalayana HOM05D004909 ORTHO05D009625 1.5e-21 107.8 179 37.4
SGA_v2.0_scaffold119G32792 Striga asiatica HOM05D004909 ORTHO05D009625 1.5e-21 107.8 131 42.7
Oeu057349.1 Olea europaea HOM05D013539 ORTHO05D014921 2.6e-21 107.1 69 76.8
SHI43987 Sapria himalayana HOM05D004909 ORTHO05D009625 2.3e-17 94.0 141 40.4
EL10As7g23793 Beta vulgaris HOM05D004909 ORTHO05D009928 6.6e-17 92.4 90 47.8
SHI35576 Sapria himalayana HOM05D004909 ORTHO05D009625 5.6e-16 89.4 89 53.9
RcHm_v2.0_MTg0498751 Rosa chinensis HOM05D004909 ORTHO05D009625 2.1e-15 87.4 125 40.8
CAN.G335.18 Capsicum annuum HOM05D004909 ORTHO05D009625 1.1e-14 85.1 129 38.8
EL10Ac1g02202 Beta vulgaris HOM05D004909 ORTHO05D009625 5.8e-13 79.3 61 59.0
SGA_v2.0_scaffold255G45542 Striga asiatica HOM05D004909 ORTHO05D009625 1.3e-12 78.2 54 64.8
Cfa021740 Carpinus fangiana HOM05D001522 ORTHO05D001547 1.7e-09 67.8 278 25.5
CBR_g41413 Chara braunii HOM05D001522 ORTHO05D001547 1.7e-09 67.8 282 26.2
SHI39947 Sapria himalayana HOM05D004909 ORTHO05D009625 3.6e-07 60.1 77 42.9
Solyc05g045720.1 Solanum lycopersicum HOM05D004909 ORTHO05D009625 3.6e-07 60.1 75 42.7
Nitab4.5_0000081g0150 Nicotiana tabacum HOM05D004909 ORTHO05D009625 1.8e-06 57.8 139 31.7
SHI51920 Sapria himalayana HOM05D009967 ORTHO05D009625 8.9e-06 55.5 46 60.9


User provided reference genes

Program Settings