Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc11g0004440 Simmondsia chinensis HOM05D003430 ORTHO05D004809 6.2e-114 414.1 200 100.0
SabraMtG0000300 Salix brachista HOM05D003430 ORTHO05D004809 4.0e-105 384.8 198 94.4
LjContig00439g0009782 Lotus japonicus HOM05D003430 ORTHO05D004809 4.5e-104 381.3 198 92.9
RcHm_v2.0_MTg0498431 Rosa chinensis HOM05D003430 ORTHO05D004809 8.4e-103 377.1 199 92.5
Aa31csc1081G20 Aethionema arabicum HOM05D003430 ORTHO05D004809 1.9e-102 375.9 200 91.5
Medtr0082s0260 Medicago truncatula HOM05D003430 ORTHO05D004809 7.1e-102 374.0 198 90.9
BolSC28t60376H Brassica oleracea HOM05D003430 ORTHO05D004809 1.6e-101 372.9 200 91.0
MBI05_g40995_MAGBIO Magnolia biondii HOM05D003430 ORTHO05D004809 2.7e-101 372.1 203 90.1
Ah.10g028080 Amaranthus hybridus HOM05D003430 ORTHO05D004809 7.9e-101 370.5 189 93.7
Solyc00g500224.1 Solanum lycopersicum HOM05D003430 ORTHO05D004809 3.9e-100 368.2 188 93.1
Solyc00g500241.1 Solanum lycopersicum HOM05D003430 ORTHO05D004809 3.9e-100 368.2 188 93.1
arahy.Tifrunner.gnm1.ann1.13LUN9 Arachis hypogaea HOM05D003430 ORTHO05D004809 6.7e-100 367.5 190 92.6
arahy.Tifrunner.gnm1.ann1.2J3QCS Arachis hypogaea HOM05D003430 ORTHO05D004809 6.7e-100 367.5 190 92.6
arahy.Tifrunner.gnm1.ann1.4C4WEU Arachis hypogaea HOM05D003430 ORTHO05D004809 6.7e-100 367.5 190 92.6
DCAR_032431 Daucus carota HOM05D003430 ORTHO05D004809 1.1e-99 366.7 199 88.4
CANSAT16G0003 Cannabis sativa HOM05D003430 ORTHO05D004809 1.5e-99 366.3 197 91.4
A04p09460 Brassica napus HOM05D003430 ORTHO05D004809 1.9e-99 365.9 199 89.9
ATMG00180 Arabidopsis thaliana HOM05D003430 ORTHO05D004809 5.6e-99 364.4 200 88.5
CARHR282710 Cardamine hirsuta HOM05D003430 ORTHO05D004809 7.4e-99 364.0 200 88.5
CARHR288640 Cardamine hirsuta HOM05D003430 ORTHO05D004809 7.4e-99 364.0 200 88.5
Lalb_Chr00c39g0409061 Lupinus albus HOM05D003430 ORTHO05D004809 2.8e-98 362.1 190 92.1
Lalb_Chr00c39g0409241 Lupinus albus HOM05D003430 ORTHO05D004809 2.8e-98 362.1 190 92.1
Lalb_Chr00c51g0413151 Lupinus albus HOM05D003430 ORTHO05D004809 2.8e-98 362.1 190 92.1
Medtr0024s0150 Medicago truncatula HOM05D003430 ORTHO05D004809 3.7e-98 361.7 198 87.9
HanXRQMTg0579531 Helianthus annuus HOM05D003430 ORTHO05D004809 4.0e-97 358.2 189 90.5
Solyc00g052430.2 Solanum lycopersicum HOM05D003430 ORTHO05D004809 4.0e-97 358.2 189 89.9
Lalb_Chr00c21g0406111 Lupinus albus HOM05D003430 ORTHO05D004809 5.8e-96 354.4 187 91.4
HanXRQChr00c0055g0571401 Helianthus annuus HOM05D003430 ORTHO05D004809 2.2e-95 352.4 184 90.8
ATR0559G258 Amborella trichopoda HOM05D003430 ORTHO05D004809 6.5e-95 350.9 198 86.9
BraSC177t45748Z Brassica rapa HOM05D003430 ORTHO05D004809 6.5e-95 350.9 188 90.4
BraSC48t46245Z Brassica rapa HOM05D003430 ORTHO05D004809 6.5e-95 350.9 188 90.4
BraSC54t46373Z Brassica rapa HOM05D003430 ORTHO05D004809 6.5e-95 350.9 188 90.4
Peaxi162Scf00456g00037 Petunia axillaris HOM05D003430 ORTHO05D004809 4.2e-94 348.2 189 87.8
Gohir.D01G116901 Gossypium hirsutum HOM05D003430 ORTHO05D004809 3.5e-93 345.1 190 87.4
HanXRQChr11g0335431 Helianthus annuus HOM05D003430 ORTHO05D004809 2.3e-92 342.4 189 87.3
Nitab4.5_0001127g0210 Nicotiana tabacum HOM05D003430 ORTHO05D004809 6.3e-90 334.3 188 85.6
Cfa023013 Carpinus fangiana HOM05D003430 ORTHO05D004809 3.1e-89 332.0 165 95.2
SGA_v2.0_scaffold245G44667 Striga asiatica HOM05D003430 ORTHO05D004809 6.9e-89 330.9 188 85.6
Zm00001eb435490 Zea mays HOM05D003430 ORTHO05D004809 5.9e-88 327.8 196 83.2
Zm00001eb436080 Zea mays HOM05D003430 ORTHO05D004809 5.9e-88 327.8 196 83.2
Cpa.g.c41010 Carica papaya HOM05D003430 ORTHO05D004809 7.6e-88 327.4 200 82.0
Sp3g25660 Schrenkiella parvula HOM05D003430 ORTHO05D004809 1.3e-87 326.6 200 82.5
SHI29635 Sapria himalayana HOM05D003430 ORTHO05D004809 6.5e-87 324.3 176 89.8
LjContig00446g0005008 Lotus japonicus HOM05D003430 ORTHO05D004809 3.2e-86 322.0 198 81.8
Nitab4.5_0003945g0010 Nicotiana tabacum HOM05D003430 ORTHO05D004809 6.1e-85 317.8 189 81.0
Lj2C1222T70 Lonicera japonica HOM05D003430 ORTHO05D004809 3.0e-84 315.5 169 89.9
BraSC77t46628Z Brassica rapa HOM05D003430 ORTHO05D004809 1.7e-79 299.7 170 85.3
unitig_87.g27923 Utricularia gibba HOM05D003430 ORTHO05D004809 3.2e-78 295.4 164 87.2
arahy.Tifrunner.gnm1.ann1.Y9E1XU Arachis hypogaea HOM05D003430 ORTHO05D004809 2.1e-77 292.7 149 92.6
arahy.Tifrunner.gnm1.ann1.ZQA7LX Arachis hypogaea HOM05D003430 ORTHO05D004809 2.1e-77 292.7 149 92.6
Dinv06724 Davidia involucrata HOM05D003430 ORTHO05D004809 3.6e-77 292.0 148 93.2
Gorai.001G162300 Gossypium raimondii HOM05D003430 ORTHO05D004809 4.6e-77 291.6 149 92.6
Ah.01g011780 Amaranthus hybridus HOM05D003430 ORTHO05D004809 4.4e-75 285.0 158 87.3
Ca_28103_v3 Cicer arietinum L. HOM05D003430 ORTHO05D004809 5.7e-75 284.6 148 91.2
VMungo0044G0003 Vigna mungo HOM05D003430 ORTHO05D004809 2.8e-74 282.3 166 83.7
ECA039G0023 Erigeron canadensis HOM05D003430 ORTHO05D004809 3.4e-72 275.4 147 87.8
CDE02G3943 Ceratophyllum demersum HOM05D003430 ORTHO05D004809 1.2e-69 266.9 151 84.8
Thhalv10002931m.g Eutrema salsugineum HOM05D003430 ORTHO05D004809 3.7e-66 255.4 197 69.0
Gorai.002G142200 Gossypium raimondii HOM05D003430 ORTHO05D004809 1.6e-64 250.0 171 73.7
Lj2C1222T53 Lonicera japonica HOM05D003430 ORTHO05D004809 1.0e-63 247.3 124 91.9
HanXRQChr09g0250621 Helianthus annuus HOM05D003430 ORTHO05D004809 1.9e-62 243.0 130 86.9
Aqoxy23s002 Aquilegia oxysepala HOM05D003430 ORTHO05D004809 2.1e-61 239.6 140 85.7
TPR.G13784 Trifolium pratense HOM05D003430 ORTHO05D004809 1.4e-57 226.9 126 84.9
Lj6g0002337 Lotus japonicus HOM05D003430 ORTHO05D004809 1.8e-57 226.5 149 76.5
Pp3c4_28970 Physcomitrium patens HOM05D003430 ORTHO05D004809 4.1e-57 225.3 205 63.4
Pp3c4_28972 Physcomitrium patens HOM05D003430 ORTHO05D004809 4.1e-57 225.3 205 63.4
Nitab4.5_0001152g0350 Nicotiana tabacum HOM05D003430 ORTHO05D004809 5.0e-55 218.4 141 76.6
SHI42478 Sapria himalayana HOM05D003430 ORTHO05D004809 5.5e-54 214.9 139 77.7
Peaxi162Scf00456g00036 Petunia axillaris HOM05D003430 ORTHO05D004809 2.1e-53 213.0 111 91.9
Solyc10g076630.1 Solanum lycopersicum HOM05D003430 ORTHO05D004809 2.3e-52 209.5 109 87.2
BolSC28t60410H Brassica oleracea HOM05D003430 ORTHO05D004809 3.4e-51 205.7 114 85.1
Nitab4.5_0000172g1130 Nicotiana tabacum HOM05D003430 ORTHO05D004809 4.3e-38 162.2 90 84.4
SHI20518 Sapria himalayana HOM05D003430 ORTHO05D004809 1.5e-30 137.1 131 57.3
Lalb_Chr21g0308991 Lupinus albus HOM05D002109 ORTHO05D002149 1.4e-28 130.6 72 87.5
SHI03773 Sapria himalayana HOM05D003430 ORTHO05D004809 2.4e-25 119.8 91 63.7
SHI04802 Sapria himalayana HOM05D003430 ORTHO05D004809 5.0e-23 112.1 67 80.6
Solyc05g025700.1 Solanum lycopersicum HOM05D003430 ORTHO05D004809 4.7e-21 105.5 109 53.2
SHI33657 Sapria himalayana HOM05D003430 ORTHO05D004809 1.9e-17 93.6 200 36.0
Solyc03g013370.1 Solanum lycopersicum HOM05D003430 ORTHO05D004809 2.1e-16 90.1 54 77.8
TPR.G22979 Trifolium pratense HOM05D000681 ORTHO05D007906 6.0e-16 88.6 45 93.3
SHI25675 Sapria himalayana HOM05D003430 ORTHO05D004809 3.3e-14 82.8 56 67.9
SHI32119 Sapria himalayana HOM05D003430 ORTHO05D004809 7.3e-14 81.6 64 65.6
Prupe.5G026600 Prunus persica HOM05D003430 ORTHO05D004809 3.1e-12 76.3 68 58.8
SGA_v2.0_scaffold178G39492 Striga asiatica HOM05D003430 ORTHO05D004809 1.3e-10 70.9 53 60.4
Nitab4.5_0000684g0110 Nicotiana tabacum HOM05D003430 ORTHO05D015169 6.4e-10 68.6 47 70.2
Nitab4.5_0000172g1190 Nicotiana tabacum HOM05D003430 ORTHO05D004809 8.4e-10 68.2 40 82.5
Mapoly0017s0010 Marchantia polymorpha HOM05D003430 ORTHO05D004809 1.4e-09 67.4 59 62.7
SalBow1G2589 Salvia bowleyana HOM05D003430 ORTHO05D004809 2.7e-08 63.2 33 90.9
Peaxi162Scf00160g00035 Petunia axillaris HOM05D004637 ORTHO05D005320 1.0e-07 61.2 32 87.5


User provided reference genes

Program Settings