Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc11g0004420 Simmondsia chinensis HOM05D003430 ORTHO05D004809 1.6e-160 569.3 282 100.0
AUR62042332 Chenopodium quinoa HOM05D003430 ORTHO05D004809 8.7e-146 520.4 282 92.9
Ah.01g011780 Amaranthus hybridus HOM05D003430 ORTHO05D004809 3.6e-144 515.0 281 91.5
Ah.10g028080 Amaranthus hybridus HOM05D003430 ORTHO05D004809 6.2e-144 514.2 280 91.8
Nn1g10089 Nelumbo nucifera HOM05D003430 ORTHO05D004809 7.6e-142 507.3 282 90.8
Lj2C1222G64 Lonicera japonica HOM05D003430 ORTHO05D004809 4.2e-140 501.5 282 90.4
Sopen00g002720 Solanum pennellii HOM05D003430 ORTHO05D004809 3.9e-138 495.0 282 89.0
BolSC28t60411H Brassica oleracea HOM05D003430 ORTHO05D004809 6.7e-138 494.2 286 89.2
Peaxi162Scf00456g00035 Petunia axillaris HOM05D003430 ORTHO05D004809 1.4e-135 486.5 281 87.9
SabraMtG0000400 Salix brachista HOM05D003430 ORTHO05D004809 1.4e-135 486.5 280 87.5
Aa31csc1081G20 Aethionema arabicum HOM05D003430 ORTHO05D004809 2.4e-135 485.7 284 88.0
Dinv06724 Davidia involucrata HOM05D003430 ORTHO05D004809 1.2e-134 483.4 271 90.8
Psat3g040120 Pisum sativum HOM05D003430 ORTHO05D004809 4.9e-133 478.0 286 87.4
Peaxi162Scf00456g00037 Petunia axillaris HOM05D003430 ORTHO05D004809 1.9e-132 476.1 271 89.3
ECA039G0023 Erigeron canadensis HOM05D003430 ORTHO05D004809 3.2e-132 475.3 279 86.7
SalBow1G3892 Salvia bowleyana HOM05D003430 ORTHO05D004809 3.2e-132 475.3 282 87.2
Solyc00g500241.1 Solanum lycopersicum HOM05D003430 ORTHO05D004809 3.2e-132 475.3 271 88.9
Medtr0082s0260 Medicago truncatula HOM05D003430 ORTHO05D004809 4.2e-132 474.9 285 86.7
VMungo0044G0002 Vigna mungo HOM05D003430 ORTHO05D004809 4.6e-131 471.5 278 88.1
PGSC0003DMG400037371 Solanum tuberosum HOM05D003430 ORTHO05D004809 1.0e-130 470.3 273 87.5
Sopen11g022460 Solanum pennellii HOM05D000004 ORTHO05D000002 5.1e-130 468.0 272 87.5
SGA_v2.0_scaffold245G44667 Striga asiatica HOM05D003430 ORTHO05D004809 1.1e-129 466.8 280 86.1
CDE02G0363 Ceratophyllum demersum HOM05D003430 ORTHO05D004809 2.2e-125 452.6 282 81.9
HanXRQMTg0579531 Helianthus annuus HOM05D003430 ORTHO05D004809 3.8e-125 451.8 271 84.9
Sp3g25650 Schrenkiella parvula HOM05D003430 ORTHO05D004809 9.3e-124 447.2 286 82.9
arahy.Tifrunner.gnm1.ann1.41QMJ9 Arachis hypogaea HOM05D003430 ORTHO05D004809 2.7e-123 445.7 286 82.5
arahy.Tifrunner.gnm1.ann1.AJMC4E Arachis hypogaea HOM05D003430 ORTHO05D004809 2.7e-123 445.7 286 82.5
Hma1.2p1_1286F.1_g273040 Hydrangea macrophylla HOM05D003430 ORTHO05D004809 3.5e-123 445.3 283 83.0
unitig_87.g27925 Utricularia gibba HOM05D003430 ORTHO05D004809 1.9e-121 439.5 282 83.0
Lalb_Chr00c39g0409071 Lupinus albus HOM05D003430 ORTHO05D004809 3.7e-120 435.3 267 85.0
Lalb_Chr00c39g0409251 Lupinus albus HOM05D003430 ORTHO05D004809 3.7e-120 435.3 267 85.0
Lalb_Chr00c51g0413171 Lupinus albus HOM05D003430 ORTHO05D004809 3.7e-120 435.3 267 85.0
Cfa023013 Carpinus fangiana HOM05D003430 ORTHO05D004809 4.8e-120 434.9 243 90.9
arahy.Tifrunner.gnm1.ann1.ABQ8F7 Arachis hypogaea HOM05D003430 ORTHO05D004809 8.2e-120 434.1 278 82.4
arahy.Tifrunner.gnm1.ann1.CY2VCK Arachis hypogaea HOM05D003430 ORTHO05D004809 8.2e-120 434.1 278 82.4
Lalb_Chr10g0094601 Lupinus albus HOM05D003430 ORTHO05D004809 1.7e-117 426.4 267 83.5
Solyc00g500224.1 Solanum lycopersicum HOM05D003430 ORTHO05D004809 3.2e-116 422.2 271 81.2
DCAR_032431 Daucus carota HOM05D003430 ORTHO05D004809 1.2e-115 420.2 243 87.7
ATMG00180 Arabidopsis thaliana HOM05D003430 ORTHO05D004809 7.9e-115 417.5 247 87.9
A04p09460 Brassica napus HOM05D003430 ORTHO05D004809 7.9e-115 417.5 247 87.9
BraSC177t45748Z Brassica rapa HOM05D003430 ORTHO05D004809 7.9e-115 417.5 247 87.9
Lj2C1231G44 Lonicera japonica HOM05D003430 ORTHO05D004809 1.8e-114 416.4 277 79.8
CARHR282710 Cardamine hirsuta HOM05D003430 ORTHO05D004809 6.7e-114 414.5 247 87.4
CARHR288640 Cardamine hirsuta HOM05D003430 ORTHO05D004809 6.7e-114 414.5 247 87.4
Gorai.001G162300 Gossypium raimondii HOM05D003430 ORTHO05D004809 2.0e-113 412.9 248 86.7
Zm00001eb435500 Zea mays HOM05D003430 ORTHO05D004809 3.3e-113 412.1 263 80.6
Zm00001eb436090 Zea mays HOM05D003430 ORTHO05D004809 3.3e-113 412.1 263 80.6
Zm00001eb437350 Zea mays HOM05D003430 ORTHO05D004809 3.3e-113 412.1 263 80.6
Zm00001eb440330 Zea mays HOM05D003430 ORTHO05D004809 3.3e-113 412.1 263 80.6
Zm00001eb440360 Zea mays HOM05D003430 ORTHO05D004809 3.3e-113 412.1 263 80.6
Zm00001eb442170 Zea mays HOM05D003430 ORTHO05D004809 3.3e-113 412.1 263 80.6
HanXRQChr09g0250621 Helianthus annuus HOM05D003430 ORTHO05D004809 6.9e-111 404.4 252 82.5
TPR.G13784 Trifolium pratense HOM05D003430 ORTHO05D004809 2.6e-110 402.5 247 85.8
Lalb_Chr00c21g0406111 Lupinus albus HOM05D003430 ORTHO05D004809 3.4e-110 402.1 247 85.4
RcHm_v2.0_MTg0498431 Rosa chinensis HOM05D003430 ORTHO05D004809 3.4e-110 402.1 244 85.7
Nn2g14911 Nelumbo nucifera HOM05D003430 ORTHO05D004809 1.3e-109 400.2 228 88.6
Lsat_1_v5_gn_6_109000 Lactuca sativa HOM05D003430 ORTHO05D004809 2.9e-109 399.1 270 77.0
CANSAT16G0003 Cannabis sativa HOM05D003430 ORTHO05D004809 3.2e-108 395.6 243 85.2
HanXRQChr00c0055g0571401 Helianthus annuus HOM05D003430 ORTHO05D004809 4.7e-107 391.7 242 83.1
SHI29634 Sapria himalayana HOM05D003430 ORTHO05D004809 4.4e-105 385.2 280 74.6
Medtr0024s0140 Medicago truncatula HOM05D003430 ORTHO05D004809 9.1e-103 377.5 232 85.3
Nitab4.5_0001127g0210 Nicotiana tabacum HOM05D003430 ORTHO05D004809 1.2e-102 377.1 261 76.6
COL.COLO4_04429 Corchorus olitorius HOM05D003430 ORTHO05D004809 1.6e-99 366.7 229 84.7
arahy.Tifrunner.gnm1.ann1.087TPC Arachis hypogaea HOM05D003430 ORTHO05D004809 2.0e-94 349.7 286 69.2
Nitab4.5_0003945g0010 Nicotiana tabacum HOM05D003430 ORTHO05D004809 2.0e-94 349.7 271 69.0
Ca_28103_v3 Cicer arietinum L. HOM05D003430 ORTHO05D004809 1.0e-90 337.4 264 70.8
SHI42478 Sapria himalayana HOM05D003430 ORTHO05D004809 3.1e-87 325.9 235 76.2
Solyc00g052430.2 Solanum lycopersicum HOM05D003430 ORTHO05D004809 1.2e-81 307.4 178 87.6
Lj2C1222G56 Lonicera japonica HOM05D003430 ORTHO05D004809 1.6e-78 297.0 171 88.9
Nitab4.5_0000172g0240 Nicotiana tabacum HOM05D003430 ORTHO05D004809 2.0e-78 296.6 282 60.3
EL10Ac3g07005 Beta vulgaris HOM05D003430 ORTHO05D004809 3.0e-74 282.7 154 93.5
BcaC05g27378 Brassica carinata HOM05D003430 ORTHO05D004809 5.4e-71 271.9 157 89.8
LjContig00439g0009782 Lotus japonicus HOM05D003430 ORTHO05D004809 1.2e-70 270.8 243 64.2
LjContig00446g0005008 Lotus japonicus HOM05D003430 ORTHO05D004809 1.2e-70 270.8 243 64.2
RhsimMtG0004400 Rhododendron simsii HOM05D003430 ORTHO05D004809 8.6e-69 264.6 153 87.6
Gorai.002G142200 Gossypium raimondii HOM05D003430 ORTHO05D004809 6.8e-66 255.0 196 71.9
SHI50824 Sapria himalayana HOM05D003430 ORTHO05D004809 5.0e-61 238.8 151 82.8
HanXRQChr11g0335401 Helianthus annuus HOM05D003430 ORTHO05D004809 8.1e-59 231.5 218 60.6
arahy.Tifrunner.gnm1.ann1.0UJ9QK Arachis hypogaea HOM05D003430 ORTHO05D004809 2.0e-57 226.9 189 68.3
COL.COLO4_04428 Corchorus olitorius HOM05D003430 ORTHO05D004809 2.0e-57 226.9 146 81.5
HanXRQChr11g0335431 Helianthus annuus HOM05D003430 ORTHO05D004809 6.4e-56 221.9 211 64.0
Thhalv10002931m.g Eutrema salsugineum HOM05D003430 ORTHO05D004809 8.3e-56 221.5 254 52.8
Nitab4.5_0010559g0010 Nicotiana tabacum HOM05D003430 ORTHO05D004809 4.6e-54 215.7 123 85.4
Lsat_1_v5_gn_5_16620 Lactuca sativa HOM05D003430 ORTHO05D004809 1.9e-52 210.3 159 73.6
Solyc11g039360.2 Solanum lycopersicum HOM05D003430 ORTHO05D004809 7.6e-49 198.4 122 77.9
BolC1t03461H Brassica oleracea HOM05D003430 ORTHO05D004809 4.1e-47 192.6 152 71.1
CAN.G600.1 Capsicum annuum HOM05D003430 ORTHO05D004809 1.2e-43 181.0 111 78.4
MBI05_g40995_MAGBIO Magnolia biondii HOM05D003430 ORTHO05D004809 1.6e-43 180.6 110 84.5
Nitab4.5_0004256g0030 Nicotiana tabacum HOM05D003430 ORTHO05D004809 2.8e-43 179.9 112 79.5
SHI20516 Sapria himalayana HOM05D003430 ORTHO05D004809 6.8e-42 175.3 144 64.6
Nitab4.5_0000172g0960 Nicotiana tabacum HOM05D003430 ORTHO05D004809 2.9e-40 169.9 141 66.0
BolC1t03462H Brassica oleracea HOM05D003430 ORTHO05D004809 2.5e-36 156.8 93 83.9
SHI31749 Sapria himalayana HOM05D003430 ORTHO05D004809 9.6e-36 154.8 92 84.8
arahy.Tifrunner.gnm1.ann1.J6HUIG Arachis hypogaea HOM05D003430 ORTHO05D026951 1.4e-34 151.0 87 87.4
Nitab4.5_0001152g0410 Nicotiana tabacum HOM05D003430 ORTHO05D004809 9.0e-34 148.3 93 82.8
Sabra12G0092700 Salix brachista HOM05D003430 ORTHO05D004809 2.0e-33 147.1 94 80.9
Aqoxy4G00518 Aquilegia oxysepala HOM05D003430 ORTHO05D004809 1.9e-31 140.6 83 85.5
Nitab4.5_0000172g1130 Nicotiana tabacum HOM05D003430 ORTHO05D004809 5.6e-28 129.0 70 87.1
Gohir.D01G117000 Gossypium hirsutum HOM05D003430 ORTHO05D004809 1.6e-27 127.5 83 79.5
AT2G07815 Arabidopsis thaliana HOM05D003430 ORTHO05D004809 1.3e-24 117.9 63 90.5
BraSC54t46375Z Brassica rapa HOM05D003430 ORTHO05D004809 1.3e-24 117.9 63 90.5
BraSC77t46627Z Brassica rapa HOM05D003430 ORTHO05D004809 1.3e-24 117.9 63 90.5
HPP92_026915 Vanilla planifolia HOM05D003430 ORTHO05D004809 4.9e-24 115.9 75 73.3
Nitab4.5_0001152g0350 Nicotiana tabacum HOM05D003430 ORTHO05D004809 2.1e-22 110.5 59 88.1
SHI25674 Sapria himalayana HOM05D003430 ORTHO05D004809 4.8e-19 99.4 74 66.2
Medtr8g091515 Medicago truncatula HOM05D003430 ORTHO05D004809 5.8e-17 92.4 52 86.5
SHI04803 Sapria himalayana HOM05D003430 ORTHO05D004809 3.8e-16 89.7 79 59.5
SHI32117 Sapria himalayana HOM05D003430 ORTHO05D004809 2.5e-15 87.0 67 68.7
SHI33655 Sapria himalayana HOM05D003430 ORTHO05D004809 1.2e-14 84.7 145 41.4
Nn044s41806 Nelumbo nucifera HOM05D003430 ORTHO05D004809 7.9e-14 82.0 46 87.0
SHI04802 Sapria himalayana HOM05D003430 ORTHO05D004809 1.0e-13 81.6 81 55.6
Gohir.D01G116901 Gossypium hirsutum HOM05D003430 ORTHO05D004809 2.3e-13 80.5 50 82.0
GSVIVG01031933001 Vitis vinifera HOM05D003430 ORTHO05D004809 2.5e-12 77.0 53 64.2
C01p34960 Brassica napus HOM05D003430 ORTHO05D004809 9.6e-12 75.1 166 34.3
Ciclev10017542m.g Citrus clementina HOM05D003430 ORTHO05D004809 9.6e-12 75.1 46 76.1
TPR.G24362 Trifolium pratense HOM05D003430 ORTHO05D004809 1.2e-09 68.2 70 60.0
Medtr5g068830 Medicago truncatula HOM05D003430 ORTHO05D004809 1.3e-08 64.7 42 73.8
SHI20517 Sapria himalayana HOM05D003430 ORTHO05D004809 1.3e-08 64.7 81 50.6
BraSC48t46245Z Brassica rapa HOM05D003430 ORTHO05D004809 2.2e-08 63.9 32 93.8
BraSC54t46373Z Brassica rapa HOM05D003430 ORTHO05D004809 2.2e-08 63.9 32 93.8
BraSC77t46628Z Brassica rapa HOM05D003430 ORTHO05D004809 2.2e-08 63.9 32 93.8
Solyc04g071020.1 Solanum lycopersicum HOM05D003430 ORTHO05D000314 8.4e-08 62.0 46 73.9
TPR.G457 Trifolium pratense HOM05D003430 ORTHO05D004809 1.4e-07 61.2 37 78.4


User provided reference genes

Program Settings