Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc11g0004390 Simmondsia chinensis HOM05D003783 ORTHO05D004568 0.0e+00 1177.2 593 100.0
Ah.10g028070 Amaranthus hybridus HOM05D003783 ORTHO05D004568 0.0e+00 1076.6 576 93.1
Ah.01g011790 Amaranthus hybridus HOM05D003783 ORTHO05D004568 4.1e-312 1074.3 576 92.7
Gorai.001G160200 Gossypium raimondii HOM05D003783 ORTHO05D004568 2.1e-303 1045.0 585 90.1
RcHm_v2.0_Chr6g0258021 Rosa chinensis HOM05D003783 ORTHO05D004568 1.7e-300 1035.4 580 89.7
RcHm_v2.0_MTg0498851 Rosa chinensis HOM05D003783 ORTHO05D004568 1.7e-300 1035.4 580 89.7
DCAR_032429 Daucus carota HOM05D003783 ORTHO05D004568 2.4e-299 1031.6 582 89.7
Nn1g10116 Nelumbo nucifera HOM05D003783 ORTHO05D004568 5.6e-296 1020.4 580 89.7
LjContig00315g0021149 Lotus japonicus HOM05D003783 ORTHO05D004568 8.1e-295 1016.5 579 88.9
LjContig00439g0010231 Lotus japonicus HOM05D003783 ORTHO05D004568 8.1e-295 1016.5 579 88.9
SabraMtG0000900 Salix brachista HOM05D003783 ORTHO05D004568 8.1e-295 1016.5 593 86.8
Nn1g09973 Nelumbo nucifera HOM05D003783 ORTHO05D004568 1.4e-294 1015.8 581 89.5
MBI05_g05347_MAGBIO Magnolia biondii HOM05D003783 ORTHO05D004568 2.4e-294 1015.0 582 88.8
Psat4g179160 Pisum sativum HOM05D003783 ORTHO05D004568 1.4e-291 1005.7 578 87.9
Solyc00g049210.1 Solanum lycopersicum HOM05D003783 ORTHO05D004568 7.4e-288 993.4 580 87.6
Solyc00g500249.1 Solanum lycopersicum HOM05D003783 ORTHO05D004568 2.6e-285 984.9 583 86.6
Solyc00g500348.1 Solanum lycopersicum HOM05D003783 ORTHO05D004568 2.6e-285 984.9 583 86.6
Nn1g10045 Nelumbo nucifera HOM05D003783 ORTHO05D004568 3.2e-283 978.0 558 89.2
arahy.Tifrunner.gnm1.ann1.WX3135 Arachis hypogaea HOM05D003783 ORTHO05D004568 3.5e-282 974.5 563 87.7
Lalb_Chr00c29g0408271 Lupinus albus HOM05D003783 ORTHO05D004568 4.3e-280 967.6 582 85.9
HanXRQChr04g0109071 Helianthus annuus HOM05D003783 ORTHO05D004568 1.3e-279 966.1 575 86.1
HanXRQChr08g0236011 Helianthus annuus HOM05D003783 ORTHO05D004568 1.3e-279 966.1 575 86.1
HanXRQChr14g0434351 Helianthus annuus HOM05D003783 ORTHO05D004568 1.3e-279 966.1 575 86.1
HanXRQMTg0579571 Helianthus annuus HOM05D003783 ORTHO05D004568 1.3e-279 966.1 575 86.1
CANSAT16G0001 Cannabis sativa HOM05D003783 ORTHO05D004568 2.1e-279 965.3 580 86.0
Lsat_1_v5_gn_5_16100 Lactuca sativa HOM05D003783 ORTHO05D004568 8.4e-276 953.4 574 85.5
Nn3g20873 Nelumbo nucifera HOM05D003783 ORTHO05D004568 1.5e-272 942.6 547 87.8
Zm00001eb434740 Zea mays HOM05D003783 ORTHO05D004568 6.3e-271 937.2 596 83.2
Zm00001eb436360 Zea mays HOM05D003783 ORTHO05D004568 6.3e-271 937.2 596 83.2
Zm00001eb437010 Zea mays HOM05D003783 ORTHO05D004568 6.3e-271 937.2 596 83.2
Zm00001eb438050 Zea mays HOM05D003783 ORTHO05D004568 6.3e-271 937.2 596 83.2
Zm00001eb438170 Zea mays HOM05D003783 ORTHO05D004568 6.3e-271 937.2 596 83.2
Zm00001eb438820 Zea mays HOM05D003783 ORTHO05D004568 6.3e-271 937.2 596 83.2
CsaV3_UNG210090 Cucumis sativus L. HOM05D003783 ORTHO05D004568 4.1e-270 934.5 566 83.7
MD14G1092300 Malus domestica HOM05D003783 ORTHO05D004568 3.9e-265 917.9 550 84.9
SGA_v2.0_scaffold245G44749 Striga asiatica HOM05D003783 ORTHO05D004568 4.3e-264 914.4 553 84.1
Gorai.013G137500 Gossypium raimondii HOM05D003783 ORTHO05D004568 7.9e-258 893.6 585 80.2
HanXRQChr09g0246391 Helianthus annuus HOM05D003783 ORTHO05D004568 1.6e-250 869.4 574 79.6
Aqoxy163s002 Aquilegia oxysepala HOM05D003783 ORTHO05D004568 6.7e-249 864.0 509 87.0
HanXRQChr01g0003471 Helianthus annuus HOM05D003783 ORTHO05D004568 2.6e-248 862.1 575 78.1
Medtr0212s0020 Medicago truncatula HOM05D003783 ORTHO05D004568 2.5e-243 845.5 586 76.8
Lsat_1_v5_gn_7_99780 Lactuca sativa HOM05D003783 ORTHO05D004568 7.7e-237 823.9 555 77.7
ECA039G0028 Erigeron canadensis HOM05D003783 ORTHO05D004568 6.6e-220 767.7 478 83.5
DCAR_031805 Daucus carota HOM05D003783 ORTHO05D004568 4.1e-214 748.4 396 94.4
RhsimMtG0005400 Rhododendron simsii HOM05D003783 ORTHO05D004568 8.0e-210 734.2 396 93.2
CDE02G1256 Ceratophyllum demersum HOM05D003783 ORTHO05D004568 2.6e-200 702.6 484 77.3
Nitab4.5_0010936g0010 Nicotiana tabacum HOM05D003783 ORTHO05D004568 2.4e-190 669.5 463 77.8
CAN.G497.18 Capsicum annuum HOM05D003783 ORTHO05D004568 1.6e-181 640.2 360 89.7
AUR62042333 Chenopodium quinoa HOM05D003783 ORTHO05D004568 1.0e-180 637.5 361 88.9
BNapus_Darmor_BZH_scaffold_234p00030 Brassica napus HOM05D003783 ORTHO05D004568 2.1e-178 629.8 375 86.1
BraSC177t45753Z Brassica rapa HOM05D003783 ORTHO05D004568 2.1e-178 629.8 375 86.1
Sp3g25620 Schrenkiella parvula HOM05D003783 ORTHO05D004568 1.4e-177 627.1 402 82.3
AL3G44640 Arabidopsis lyrata HOM05D003783 ORTHO05D004568 3.1e-177 625.9 375 85.9
CARHR283110 Cardamine hirsuta HOM05D003783 ORTHO05D004568 6.9e-177 624.8 375 85.6
ATMG00830 Arabidopsis thaliana HOM05D003783 ORTHO05D004568 3.4e-176 622.5 375 85.3
Psat6g195120 Pisum sativum HOM05D003783 ORTHO05D004568 2.4e-174 616.3 578 60.2
Nitab4.5_0000592g0140 Nicotiana tabacum HOM05D003783 ORTHO05D004568 1.6e-173 613.6 580 62.6
Dinv06713 Davidia involucrata HOM05D003783 ORTHO05D004568 1.8e-172 610.1 318 94.7
Peaxi162Scf02040g00001 Petunia axillaris HOM05D003783 ORTHO05D004568 7.6e-168 594.7 318 93.1
CDE02G3531 Ceratophyllum demersum HOM05D003783 ORTHO05D004568 4.3e-163 578.9 461 68.1
SHI54470 Sapria himalayana HOM05D003783 ORTHO05D004568 2.1e-157 560.1 392 77.0
SHI36895 Sapria himalayana HOM05D003783 ORTHO05D004568 4.6e-157 558.9 401 74.6
SHI54253 Sapria himalayana HOM05D003783 ORTHO05D004568 2.9e-151 539.7 374 77.5
PGSC0003DMG400016897 Solanum tuberosum HOM05D003783 ORTHO05D004568 3.2e-150 536.2 293 92.8
GSVIVG01006218001 Vitis vinifera HOM05D003783 ORTHO05D004568 5.3e-145 518.8 580 53.3
Aa31csc549G20 Aethionema arabicum HOM05D003783 ORTHO05D004568 3.4e-144 516.2 306 85.3
GSVIVG01004964001 Vitis vinifera HOM05D003783 ORTHO05D004568 1.1e-142 511.1 580 52.8
AUR62033936 Chenopodium quinoa HOM05D003783 ORTHO05D004568 1.5e-136 490.7 296 83.8
Peaxi162Scf00707g00004 Petunia axillaris HOM05D003783 ORTHO05D004568 5.9e-136 488.8 260 93.8
Thhalv10029166m.g Eutrema salsugineum HOM05D003783 ORTHO05D004568 1.4e-132 477.6 375 69.6
Nitab4.5_0000128g0160 Nicotiana tabacum HOM05D003783 ORTHO05D004568 1.7e-127 460.7 248 89.5
Lsat_1_v5_gn_7_67781 Lactuca sativa HOM05D003783 ORTHO05D004568 6.5e-127 458.8 271 84.9
Eucgr.C03075 Eucalyptus grandis HOM05D003783 ORTHO05D004568 7.2e-126 455.3 396 63.9
Solyc11g063630.1 Solanum lycopersicum HOM05D003783 ORTHO05D004568 8.0e-125 451.8 285 81.8
SHI54813 Sapria himalayana HOM05D003783 ORTHO05D004568 4.8e-122 442.6 295 78.6
SalBow1G3009 Salvia bowleyana HOM05D003783 ORTHO05D004568 5.9e-120 435.6 239 92.5
HanXRQChr01g0029691 Helianthus annuus HOM05D003783 ORTHO05D004568 4.0e-116 422.9 244 87.3
ATR1173G003 Amborella trichopoda HOM05D003783 ORTHO05D004568 1.3e-114 417.9 265 79.2
Solyc11g063620.2 Solanum lycopersicum HOM05D003783 ORTHO05D004568 1.4e-113 414.5 292 75.3
HanXRQChr11g0334181 Helianthus annuus HOM05D003783 ORTHO05D004568 7.2e-110 402.1 293 74.1
HanXRQChr17g0544011 Helianthus annuus HOM05D003783 ORTHO05D004568 7.2e-110 402.1 293 74.1
BraSC48t46298Z Brassica rapa HOM05D003783 ORTHO05D004568 1.0e-108 398.3 204 94.6
BraSC48t46316Z Brassica rapa HOM05D003783 ORTHO05D004568 1.0e-108 398.3 204 94.6
Sp3g25860 Schrenkiella parvula HOM05D003783 ORTHO05D004568 1.0e-108 398.3 206 93.7
BraSC177t45761Z Brassica rapa HOM05D003783 ORTHO05D004568 4.0e-108 396.4 204 94.1
Lsat_1_v5_gn_4_139080 Lactuca sativa HOM05D003783 ORTHO05D004568 2.0e-107 394.0 219 89.0
AL3G44470 Arabidopsis lyrata HOM05D003783 ORTHO05D004568 3.5e-104 383.3 197 94.4
CAN.G134.19 Capsicum annuum HOM05D003783 ORTHO05D004568 1.3e-103 381.3 273 71.4
CARHR283230 Cardamine hirsuta HOM05D003783 ORTHO05D004568 2.9e-103 380.2 197 93.9
SEGI_30299 Sequoiadendron giganteum HOM05D003783 ORTHO05D004568 5.2e-100 369.4 859 36.7
Sopen05g012690 Solanum pennellii HOM05D003783 ORTHO05D004568 6.2e-93 345.9 198 90.4
BolSC28t60416H Brassica oleracea HOM05D003783 ORTHO05D004568 4.4e-91 339.7 251 71.3
BcaC09g49580 Brassica carinata HOM05D003783 ORTHO05D004568 1.3e-90 338.2 191 92.1
BraSC77t46622Z Brassica rapa HOM05D003783 ORTHO05D004568 5.4e-89 332.8 181 94.5
BcaC09g49589 Brassica carinata HOM05D003783 ORTHO05D004568 9.2e-89 332.0 170 93.5
PSO782G0649 Papaver somniferum HOM05D003783 ORTHO05D004568 4.6e-88 329.7 264 66.7
Psat7g150720 Pisum sativum HOM05D003783 ORTHO05D004568 7.8e-88 328.9 295 64.4
C01p34860 Brassica napus HOM05D003783 ORTHO05D004568 1.1e-86 325.1 174 90.2
PSO135G0232 Papaver somniferum HOM05D003783 ORTHO05D004568 1.9e-86 324.3 263 66.9
TPR.G22134 Trifolium pratense HOM05D003783 ORTHO05D004568 3.3e-86 323.6 175 88.6
C01p34760 Brassica napus HOM05D003783 ORTHO05D004568 1.8e-84 317.8 174 88.5
PSO675G6716 Papaver somniferum HOM05D003783 ORTHO05D004568 4.0e-84 316.6 264 64.4
Nitab4.5_0002589g0080 Nicotiana tabacum HOM05D003783 ORTHO05D004568 1.9e-81 307.8 238 67.2
Ah.00g237920 Amaranthus hybridus HOM05D003783 ORTHO05D004568 1.3e-79 301.6 227 70.5
BraSC48t46228Z Brassica rapa HOM05D003783 ORTHO05D004568 1.4e-76 291.6 144 94.4
MBI19_g47479_MAGBIO Magnolia biondii HOM05D003783 ORTHO05D004568 1.4e-76 291.6 171 87.7
MSTRG.27795 Avicennia marina HOM05D003783 ORTHO05D004568 2.4e-76 290.8 163 87.7
CAN.G1001.41 Capsicum annuum HOM05D003783 ORTHO05D004568 1.0e-71 275.4 348 47.1
BolSC28t60306H Brassica oleracea HOM05D003783 ORTHO05D004568 1.7e-71 274.6 170 80.0
BolSC28t60363H Brassica oleracea HOM05D003783 ORTHO05D004568 1.7e-71 274.6 170 80.0
CARHR287240 Cardamine hirsuta HOM05D003783 ORTHO05D004568 1.1e-70 271.9 222 70.3
HanXRQChr11g0334171 Helianthus annuus HOM05D003783 ORTHO05D004568 2.4e-68 264.2 194 71.1
HanXRQChr17g0544021 Helianthus annuus HOM05D003783 ORTHO05D004568 2.4e-68 264.2 194 71.1
Nitab4.5_0008535g0060 Nicotiana tabacum HOM05D003783 ORTHO05D004568 3.8e-66 256.9 149 85.9
Lj2P1232T100 Lonicera japonica HOM05D003783 ORTHO05D004568 1.9e-65 254.6 136 93.4
BcaC09g49594 Brassica carinata HOM05D003783 ORTHO05D004568 4.2e-65 253.4 135 94.8
HanXRQChr01g0013391 Helianthus annuus HOM05D003783 ORTHO05D004568 6.6e-63 246.1 134 91.8
DCAR_032038 Daucus carota HOM05D003783 ORTHO05D004568 5.3e-60 236.5 122 96.7
CAN.G1439.8 Capsicum annuum HOM05D003783 ORTHO05D004568 9.0e-60 235.7 272 53.7
AT2G07768 Arabidopsis thaliana HOM05D003783 ORTHO05D004568 4.2e-57 226.9 124 94.4
arahy.Tifrunner.gnm1.ann1.BUQ0M3 Arachis hypogaea HOM05D003783 ORTHO05D004568 3.9e-55 220.3 145 82.8
Sc22g0004100 Simmondsia chinensis HOM05D003783 ORTHO05D004568 8.7e-55 219.2 126 86.5
CAN.G1439.7 Capsicum annuum HOM05D003783 ORTHO05D004568 1.5e-54 218.4 161 68.9
Nitab4.5_0004300g0270 Nicotiana tabacum HOM05D003783 ORTHO05D004568 9.0e-52 209.1 123 87.8
CAN.G1576.3 Capsicum annuum HOM05D003783 ORTHO05D004568 2.0e-51 208.0 130 80.8
BraSC224t45815Z Brassica rapa HOM05D003783 ORTHO05D004568 3.4e-51 207.2 143 70.6
TPR.G885 Trifolium pratense HOM05D003783 ORTHO05D004568 5.8e-51 206.5 116 91.4
BolC1t03452H Brassica oleracea HOM05D003783 ORTHO05D004568 1.7e-50 204.9 112 89.3
BolSC28t60383H Brassica oleracea HOM05D003783 ORTHO05D004568 2.9e-50 204.1 120 80.0
ClCG09G015160 Citrullus lanatus HOM05D003783 ORTHO05D004568 1.4e-49 201.8 126 84.9
PGR028G0013 Punica granatum HOM05D003783 ORTHO05D004568 7.9e-48 196.1 117 88.0
BolC1t03458H Brassica oleracea HOM05D003783 ORTHO05D004568 1.5e-46 191.8 132 72.0
BraSC48t46351Z Brassica rapa HOM05D003783 ORTHO05D004568 2.5e-46 191.0 104 94.2
Lsat_1_v5_gn_8_111800 Lactuca sativa HOM05D003783 ORTHO05D004568 1.3e-45 188.7 122 81.1
Solyc04g049870.1 Solanum lycopersicum HOM05D003783 ORTHO05D004568 2.8e-45 187.6 331 42.9
Lsat_1_v5_gn_5_16140 Lactuca sativa HOM05D003783 ORTHO05D004568 9.0e-44 182.6 123 78.0
BraSC48t46252Z Brassica rapa HOM05D003783 ORTHO05D004568 7.1e-41 172.9 115 78.3
Nitab4.5_0000172g1380 Nicotiana tabacum HOM05D003783 ORTHO05D004568 2.1e-40 171.4 119 77.3
Nitab4.5_0002888g0030 Nicotiana tabacum HOM05D003783 ORTHO05D004568 2.4e-36 157.9 94 88.3
BolC1t03443H Brassica oleracea HOM05D003783 ORTHO05D004568 2.6e-35 154.5 91 86.8
QL02p008127 Quercus lobata HOM05D003783 ORTHO05D004568 2.2e-34 151.4 75 97.3
Lalb_Chr11g0068271 Lupinus albus HOM05D003783 ORTHO05D004568 8.2e-29 132.9 77 81.8
CAN.G124.8 Capsicum annuum HOM05D003783 ORTHO05D004568 3.1e-28 131.0 93 75.3
Dinv06615 Davidia involucrata HOM05D003783 ORTHO05D011738 5.3e-28 130.2 65 95.4
Ciclev10003580m.g Citrus clementina HOM05D003783 ORTHO05D004568 1.2e-27 129.0 137 55.5
SHI32491 Sapria himalayana HOM05D003783 ORTHO05D004568 4.5e-27 127.1 163 47.9
BraSC54t46361Z Brassica rapa HOM05D003783 ORTHO05D004568 5.0e-26 123.6 66 92.4
Lsat_1_v5_gn_4_3660 Lactuca sativa HOM05D003783 ORTHO05D001069 1.4e-25 122.1 105 62.9
Nitab4.5_0011099g0010 Nicotiana tabacum HOM05D003783 ORTHO05D004568 3.9e-23 114.0 62 90.3
Lalb_Chr22g0357831 Lupinus albus HOM05D003783 ORTHO05D004568 6.7e-23 113.2 71 76.1
CAN.G1439.6 Capsicum annuum HOM05D003783 ORTHO05D004568 2.2e-21 108.2 195 37.4
Solyc02g050290.1 Solanum lycopersicum HOM05D003783 ORTHO05D004568 1.4e-20 105.5 74 75.7
Ah.01g011720 Amaranthus hybridus HOM05D003783 ORTHO05D013694 2.6e-19 101.3 71 71.8
TPR.G13188 Trifolium pratense HOM05D003783 ORTHO05D004568 1.5e-17 95.5 51 74.5
C05p22550 Brassica napus HOM05D003783 ORTHO05D004568 5.5e-17 93.6 55 85.5
Solyc08g029270.2 Solanum lycopersicum HOM05D003783 ORTHO05D004568 2.7e-16 91.3 63 66.7
Nitab4.5_0002739g0140 Nicotiana tabacum HOM05D003783 ORTHO05D015637 3.6e-16 90.9 72 69.4
SHI26670 Sapria himalayana HOM05D003783 ORTHO05D004568 3.6e-16 90.9 58 74.1
BolC5t30954H Brassica oleracea HOM05D003783 ORTHO05D004568 3.9e-15 87.4 55 81.8
Aqoxy1G02245 Aquilegia oxysepala HOM05D003783 ORTHO05D004568 1.5e-14 85.5 53 88.7
Lalb_Chr22g0357821 Lupinus albus HOM05D003783 ORTHO05D004568 5.7e-14 83.6 84 52.4
Solyc12g035895.1 Solanum lycopersicum HOM05D003783 ORTHO05D004568 1.3e-13 82.4 146 37.7
Solyc06g065880.1 Solanum lycopersicum HOM05D003783 ORTHO05D004568 1.7e-13 82.0 115 46.1
ATR1173G002 Amborella trichopoda HOM05D003783 ORTHO05D004568 4.8e-13 80.5 53 73.6
Nitab4.5_0005837g0060 Nicotiana tabacum HOM05D000102 ORTHO05D000138 4.8e-13 80.5 48 81.2
SHI28703 Sapria himalayana HOM05D003783 ORTHO05D004568 5.3e-12 77.0 63 61.9
Solyc10g048130.3 Solanum lycopersicum HOM05D003783 ORTHO05D004568 5.3e-12 77.0 170 35.3
SHI26671 Sapria himalayana HOM05D003783 ORTHO05D004568 1.2e-11 75.9 67 59.7
Solyc12g035910.1 Solanum lycopersicum HOM05D003783 ORTHO05D004568 4.5e-11 73.9 49 73.5
SHI11506 Sapria himalayana HOM05D003783 ORTHO05D004568 1.0e-10 72.8 47 74.5
SEGI_06792 Sequoiadendron giganteum HOM05D003783 ORTHO05D004568 5.0e-10 70.5 54 70.4
Actinidia31963 Actinidia chinensis HOM05D000944 ORTHO05D003581 6.5e-10 70.1 53 66.0
SHI26672 Sapria himalayana HOM05D003783 ORTHO05D004568 1.5e-09 68.9 65 61.5
Solyc03g013380.1 Solanum lycopersicum HOM05D003783 ORTHO05D004568 1.9e-09 68.6 45 77.8
Nitab4.5_0011099g0020 Nicotiana tabacum HOM05D003783 ORTHO05D004568 2.5e-09 68.2 198 29.8
CAN.G1439.3 Capsicum annuum HOM05D002965 ORTHO05D010183 1.6e-08 65.5 50 58.0
BcaC01g03561 Brassica carinata HOM05D025145 ORTHO05D016019 2.1e-08 65.1 45 77.8
Peaxi162Scf00720g00065 Petunia axillaris HOM05D003783 ORTHO05D004568 6.1e-08 63.5 35 77.1
Aa31csc822G30 Aethionema arabicum HOM05D001987 ORTHO05D006514 2.0e-06 58.5 219 26.0
CAN.G60.11 Capsicum annuum HOM05D001322 ORTHO05D001301 2.6e-06 58.2 35 82.9
Peaxi162Scf00122g00087 Petunia axillaris HOM05D000216 ORTHO05D000634 9.7e-06 56.2 28 92.9


User provided reference genes

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