Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc11g0004230 Simmondsia chinensis HOM05D002705 ORTHO05D004955 6.7e-96 354.0 176 100.0
TAR636G2282 Trochodendron aralioides HOM05D002705 ORTHO05D004955 4.6e-44 181.8 136 64.0
CiPaw.07G183200 Carya illinoinensis HOM05D002705 ORTHO05D004955 8.6e-43 177.6 139 61.2
Ciclev10033740m.g Citrus clementina HOM05D002705 ORTHO05D004955 1.1e-42 177.2 122 68.9
Potri.012G114100 Populus trichocarpa HOM05D002705 ORTHO05D004955 1.1e-42 177.2 139 62.6
Ah.02g115400 Amaranthus hybridus HOM05D002705 ORTHO05D004955 1.9e-42 176.4 134 61.2
Actinidia13623 Actinidia chinensis HOM05D002705 ORTHO05D004955 3.3e-42 175.6 126 64.3
Lj5g0005183 Lotus japonicus HOM05D002705 ORTHO05D004955 3.3e-42 175.6 124 66.9
Cpa.g.sc13.234 Carica papaya HOM05D002705 ORTHO05D004955 5.6e-42 174.9 126 65.1
DCAR_014643 Daucus carota HOM05D002705 ORTHO05D004955 5.6e-42 174.9 138 62.3
TPR.G18561 Trifolium pratense HOM05D002705 ORTHO05D004955 5.6e-42 174.9 124 67.7
TWI39G0103 Tripterygium wilfordii HOM05D002705 ORTHO05D004955 9.5e-42 174.1 117 68.4
Glyma.20G198400 Glycine max HOM05D002705 ORTHO05D004955 1.2e-41 173.7 124 66.1
Medtr1g072800 Medicago truncatula HOM05D002705 ORTHO05D004955 1.2e-41 173.7 141 61.7
Sabra12G0083000 Salix brachista HOM05D002705 ORTHO05D004955 1.2e-41 173.7 139 61.9
Atru.chr6.1980 Acer truncatum HOM05D002705 ORTHO05D004955 2.8e-41 172.6 135 63.0
Atru.chr6.2006 Acer truncatum HOM05D002705 ORTHO05D004955 2.8e-41 172.6 135 63.0
ClCG01G004930 Citrullus lanatus HOM05D002705 ORTHO05D004955 1.1e-40 170.6 123 65.9
Nn1g00769 Nelumbo nucifera HOM05D002705 ORTHO05D004955 1.4e-40 170.2 118 66.9
Nn1g00770 Nelumbo nucifera HOM05D002705 ORTHO05D004955 1.4e-40 170.2 118 66.9
Cfa013602 Carpinus fangiana HOM05D002705 ORTHO05D004955 1.8e-40 169.9 123 65.9
Sed0003657 Sechium edule HOM05D002705 ORTHO05D004955 1.8e-40 169.9 119 68.1
Manes.14G040900 Manihot esculenta HOM05D002705 ORTHO05D004955 2.3e-40 169.5 139 60.4
Psat6g140240 Pisum sativum HOM05D002705 ORTHO05D004955 3.1e-40 169.1 124 66.1
COL.COLO4_37311 Corchorus olitorius HOM05D002705 ORTHO05D004955 4.0e-40 168.7 140 57.9
PSO675G1384 Papaver somniferum HOM05D002705 ORTHO05D004955 5.2e-40 168.3 119 67.2
Ca_09786_v3 Cicer arietinum L. HOM05D002705 ORTHO05D004955 6.8e-40 167.9 124 65.3
HanXRQChr15g0493601 Helianthus annuus HOM05D002705 ORTHO05D004955 6.8e-40 167.9 142 59.9
MELO3C005443.2 Cucumis melo HOM05D002705 ORTHO05D004955 8.9e-40 167.5 123 65.0
Gohir.A09G248500 Gossypium hirsutum HOM05D002705 ORTHO05D004955 1.5e-39 166.8 143 55.9
CsaV3_5G005160 Cucumis sativus L. HOM05D002705 ORTHO05D004955 2.0e-39 166.4 123 65.0
PGR142G4199 Punica granatum HOM05D002705 ORTHO05D004955 2.0e-39 166.4 123 63.4
Gohir.D09G249500 Gossypium hirsutum HOM05D002705 ORTHO05D004955 4.4e-39 165.2 143 55.2
Gorai.006G273800 Gossypium raimondii HOM05D002705 ORTHO05D004955 4.4e-39 165.2 143 55.2
QL09p027408 Quercus lobata HOM05D002705 ORTHO05D004955 4.4e-39 165.2 181 51.9
Prupe.2G270600 Prunus persica HOM05D002705 ORTHO05D004955 5.8e-39 164.9 136 57.4
Thecc.03G145700 Theobroma cacao HOM05D002705 ORTHO05D004955 7.5e-39 164.5 143 55.9
Migut.F01210 Erythranthe guttata HOM05D002705 ORTHO05D004955 9.9e-39 164.1 137 59.1
Lalb_Chr06g0169611 Lupinus albus HOM05D002705 ORTHO05D004955 9.9e-39 164.1 123 63.4
vmacro06848 Vaccinium macrocarpon HOM05D002705 ORTHO05D004955 9.9e-39 164.1 121 64.5
Aqoxy7G00864 Aquilegia oxysepala HOM05D002705 ORTHO05D004955 1.7e-38 163.3 122 61.5
MSTRG.8400 Avicennia marina HOM05D002705 ORTHO05D004955 3.7e-38 162.2 136 60.3
A03p55770 Brassica napus HOM05D002705 ORTHO05D004955 4.9e-38 161.8 126 62.7
FvH4_7g26710 Fragaria vesca HOM05D002705 ORTHO05D004955 4.9e-38 161.8 136 57.4
FAN03G2179 Fragaria x ananassa HOM05D002705 ORTHO05D004955 4.9e-38 161.8 136 57.4
FAN06G0843 Fragaria x ananassa HOM05D002705 ORTHO05D004955 4.9e-38 161.8 136 57.4
FAN10G0038 Fragaria x ananassa HOM05D002705 ORTHO05D004955 4.9e-38 161.8 136 57.4
RcHm_v2.0_Chr1g0373301 Rosa chinensis HOM05D002705 ORTHO05D004955 8.3e-38 161.0 136 57.4
MD07G1241600 Malus domestica HOM05D002705 ORTHO05D004955 1.1e-37 160.6 123 58.5
Sp7g23120 Schrenkiella parvula HOM05D002705 ORTHO05D004955 1.4e-37 160.2 123 62.6
BcaC06g32837 Brassica carinata HOM05D002705 ORTHO05D004955 1.9e-37 159.8 126 61.9
ATR0665G329 Amborella trichopoda HOM05D002705 ORTHO05D004955 2.4e-37 159.5 122 63.9
Carub.0007s1591 Capsella rubella HOM05D002705 ORTHO05D004955 2.4e-37 159.5 123 61.8
Thhalv10024258m.g Eutrema salsugineum HOM05D002705 ORTHO05D004955 2.4e-37 159.5 126 59.5
SGA_v2.0_scaffold352G49687 Striga asiatica HOM05D002705 ORTHO05D004955 2.4e-37 159.5 137 60.6
ECA232G4016 Erigeron canadensis HOM05D002705 ORTHO05D004955 3.2e-37 159.1 118 65.3
arahy.Tifrunner.gnm1.ann1.WYM0Y2 Arachis hypogaea HOM05D002705 ORTHO05D004955 4.1e-37 158.7 123 61.8
arahy.Tifrunner.gnm1.ann1.ZG0SUW Arachis hypogaea HOM05D002705 ORTHO05D004955 4.1e-37 158.7 123 61.8
Lsat_1_v5_gn_0_9880 Lactuca sativa HOM05D002705 ORTHO05D004955 4.1e-37 158.7 142 55.6
AT4G25120 Arabidopsis thaliana HOM05D002705 ORTHO05D004955 5.4e-37 158.3 123 61.8
BolC7t45891H Brassica oleracea HOM05D002705 ORTHO05D004955 5.4e-37 158.3 126 61.1
BraA03t14645Z Brassica rapa HOM05D002705 ORTHO05D004955 5.4e-37 158.3 126 61.1
Nitab4.5_0000103g0340 Nicotiana tabacum HOM05D002705 ORTHO05D004955 7.1e-37 157.9 122 63.1
Sopen03g024730 Solanum pennellii HOM05D002705 ORTHO05D004955 7.1e-37 157.9 115 66.1
AL7G28030 Arabidopsis lyrata HOM05D002705 ORTHO05D004955 9.2e-37 157.5 121 62.0
C07p54050 Brassica napus HOM05D002705 ORTHO05D004955 1.2e-36 157.1 126 60.3
Aa31LG7G10510 Aethionema arabicum HOM05D002705 ORTHO05D004955 1.6e-36 156.8 136 56.6
THA.LOC104825051 Tarenaya hassleriana HOM05D002705 ORTHO05D004955 1.6e-36 156.8 123 60.2
Solyc03g093840.3 Solanum lycopersicum HOM05D002705 ORTHO05D004955 2.1e-36 156.4 115 65.2
Os07g0492100 Oryza sativa ssp. japonica HOM05D002705 ORTHO05D004955 2.7e-36 156.0 118 62.7
Eucgr.K00116 Eucalyptus grandis HOM05D002705 ORTHO05D004955 6.0e-36 154.8 119 59.7
CARHR232510 Cardamine hirsuta HOM05D002705 ORTHO05D004955 7.8e-36 154.5 123 60.2
FAN01G0508 Fragaria x ananassa HOM05D002705 ORTHO05D004955 2.3e-35 152.9 141 54.6
Manes.14G040200 Manihot esculenta HOM05D002705 ORTHO05D004955 5.1e-35 151.8 139 56.1
Haze_22224 Corylus avellana HOM05D002705 ORTHO05D004955 6.6e-35 151.4 172 48.3
Lj8C49G2 Lonicera japonica HOM05D002705 ORTHO05D004955 6.6e-35 151.4 173 48.6
Dinv34540 Davidia involucrata HOM05D002705 ORTHO05D004955 1.5e-34 150.2 119 62.2
GSVIVG01013853001 Vitis vinifera HOM05D002705 ORTHO05D004955 4.3e-34 148.7 159 49.1
Phvul.L001885 Phaseolus vulgaris HOM05D002705 ORTHO05D004955 3.6e-33 145.6 101 68.3
HPP92_027816 Vanilla planifolia HOM05D002705 ORTHO05D004955 8.1e-33 144.4 128 54.7
SalBow2G1886 Salvia bowleyana HOM05D002705 ORTHO05D004955 3.1e-32 142.5 174 46.6
AUR62042388 Chenopodium quinoa HOM05D002705 ORTHO05D004955 9.9e-31 137.5 117 56.4
EL10As1g23078 Beta vulgaris HOM05D002705 ORTHO05D004955 1.1e-29 134.0 137 52.6
Cc00_g24340 Coffea canephora HOM05D002705 ORTHO05D004955 1.4e-29 133.7 161 47.8
MD07G1243600 Malus domestica HOM05D002705 ORTHO05D004955 1.9e-29 133.3 123 50.4
unitig_578.g16613 Utricularia gibba HOM05D002705 ORTHO05D004955 7.8e-28 127.9 123 54.5
MD07G1243100 Malus domestica HOM05D002705 ORTHO05D004955 1.3e-27 127.1 100 56.0
CDE06G1177 Ceratophyllum demersum HOM05D002705 ORTHO05D004955 1.6e-25 120.2 122 48.4
AagrBONN_evm.TU.Sc2ySwM_340.578 Anthoceros agrestis HOM05D002705 ORTHO05D004955 2.1e-25 119.8 114 52.6
SEGI_05624 Sequoiadendron giganteum HOM05D002705 ORTHO05D004955 3.6e-25 119.0 118 48.3
Nitab4.5_0010058g0010 Nicotiana tabacum HOM05D002705 ORTHO05D004955 8.1e-25 117.9 122 53.3
Pp3c1_29170 Physcomitrium patens HOM05D002705 ORTHO05D004955 8.1e-25 117.9 131 44.3
AagrBONN_evm.TU.Sc2ySwM_117.709 Anthoceros agrestis HOM05D002705 ORTHO05D004955 1.1e-24 117.5 118 50.0
Mapoly0067s0049 Marchantia polymorpha HOM05D002705 ORTHO05D004955 1.1e-24 117.5 118 50.8
Rhsim03G0158700 Rhododendron simsii HOM05D002705 ORTHO05D004955 1.5e-23 113.6 104 51.9
Peaxi162Scf00073g01719 Petunia axillaris HOM05D002705 ORTHO05D004955 5.8e-23 111.7 80 70.0
SEGI_07874 Sequoiadendron giganteum HOM05D002705 ORTHO05D004955 2.3e-19 99.8 96 47.9
SMO118G0423 Selaginella moellendorffii HOM05D002705 ORTHO05D004955 8.7e-19 97.8 101 47.5
SMO263G0015 Selaginella moellendorffii HOM05D002705 ORTHO05D004955 8.7e-19 97.8 101 47.5
MD07G1245700 Malus domestica HOM05D002705 ORTHO05D004955 1.5e-18 97.1 100 45.0
MD07G1244200 Malus domestica HOM05D002705 ORTHO05D004955 3.2e-13 79.3 113 38.1
CAN.G1559.4 Capsicum annuum HOM05D002705 ORTHO05D004955 9.3e-13 77.8 54 66.7
CBR_g55305 Chara braunii HOM05D002705 ORTHO05D004955 1.9e-10 70.1 76 48.7
MD07G1244800 Malus domestica HOM05D002705 ORTHO05D004955 3.3e-10 69.3 100 36.0
HPP92_003517 Vanilla planifolia HOM05D002705 ORTHO05D004955 1.2e-07 60.8 49 51.0
FvH4_3g31690 Fragaria vesca HOM05D000769 ORTHO05D000598 7.6e-07 58.2 42 64.3


User provided reference genes

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