Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc11g0004060 Simmondsia chinensis HOM05D004761 ORTHO05D005813 9.6e-33 142.9 72 100.0
Sc11g0003470 Simmondsia chinensis HOM05D004761 ORTHO05D005813 6.2e-24 113.6 66 87.9
Haze_17489 Corylus avellana HOM05D004761 ORTHO05D005813 2.0e-22 108.6 70 75.7
Glyma.20G116100 Glycine max HOM05D004761 ORTHO05D005813 2.6e-22 108.2 66 83.3
VMungo0720G0616 Vigna mungo HOM05D004761 ORTHO05D005813 2.6e-22 108.2 66 83.3
EL10Ac6g14394 Beta vulgaris HOM05D004761 ORTHO05D005813 4.5e-22 107.5 66 81.8
Oeu003182.1 Olea europaea HOM05D004761 ORTHO05D005813 7.6e-22 106.7 66 80.3
Sed0020611 Sechium edule HOM05D004761 ORTHO05D005813 7.6e-22 106.7 66 80.3
Ah.03g137610 Amaranthus hybridus HOM05D004761 ORTHO05D005813 1.0e-21 106.3 66 78.8
Ah.02g127920 Amaranthus hybridus HOM05D004761 ORTHO05D005813 1.7e-21 105.5 66 78.8
GSVIVG01011891001 Vitis vinifera HOM05D004761 ORTHO05D005813 1.7e-21 105.5 66 78.8
CDE05G0568 Ceratophyllum demersum HOM05D004761 ORTHO05D005813 2.2e-21 105.1 66 77.3
CDE05G1514 Ceratophyllum demersum HOM05D004761 ORTHO05D005813 2.2e-21 105.1 66 77.3
AUR62002860 Chenopodium quinoa HOM05D004761 ORTHO05D005813 2.9e-21 104.8 66 78.8
Cfa018591 Carpinus fangiana HOM05D004761 ORTHO05D005813 3.8e-21 104.4 66 78.8
CiPaw.16G065200 Carya illinoinensis HOM05D004761 ORTHO05D005813 3.8e-21 104.4 66 77.3
Cc11_g10100 Coffea canephora HOM05D004761 ORTHO05D005813 3.8e-21 104.4 66 78.8
Hma1.2p1_0061F.1_g033840 Hydrangea macrophylla HOM05D004761 ORTHO05D005813 3.8e-21 104.4 66 77.3
Manes.14G102900 Manihot esculenta HOM05D004761 ORTHO05D005813 3.8e-21 104.4 66 77.3
Phvul.007G027600 Phaseolus vulgaris HOM05D004761 ORTHO05D005813 3.8e-21 104.4 66 78.8
Sabra08G0091800 Salix brachista HOM05D004761 ORTHO05D005813 3.8e-21 104.4 66 77.3
Potri.008G121100 Populus trichocarpa HOM05D004761 ORTHO05D005813 5.0e-21 104.0 66 77.3
PGR119G1215 Punica granatum HOM05D004761 ORTHO05D005813 5.0e-21 104.0 66 77.3
Solyc05g009370.4 Solanum lycopersicum HOM05D004761 ORTHO05D005813 5.0e-21 104.0 66 77.3
Sopen05g005170 Solanum pennellii HOM05D004761 ORTHO05D005813 5.0e-21 104.0 66 77.3
PGSC0003DMG400014544 Solanum tuberosum HOM05D004761 ORTHO05D005813 5.0e-21 104.0 66 77.3
ATR0171G026 Amborella trichopoda HOM05D004761 ORTHO05D005813 6.5e-21 103.6 66 77.3
CsaV3_5G034380 Cucumis sativus L. HOM05D004761 ORTHO05D005813 6.5e-21 103.6 66 77.3
PSO717G0038 Papaver somniferum HOM05D004761 ORTHO05D005813 6.5e-21 103.6 66 75.8
CAN.G610.79 Capsicum annuum HOM05D004761 ORTHO05D005813 8.4e-21 103.2 66 75.8
AUR62035212 Chenopodium quinoa HOM05D004761 ORTHO05D005813 8.4e-21 103.2 66 77.3
PSO675G3483 Papaver somniferum HOM05D004761 ORTHO05D005813 8.4e-21 103.2 66 75.8
Migut.E00345 Erythranthe guttata HOM05D004761 ORTHO05D005813 1.1e-20 102.8 66 77.3
HanXRQChr15g0476311 Helianthus annuus HOM05D004761 ORTHO05D005813 1.1e-20 102.8 66 77.3
ClCG05G022660 Citrullus lanatus HOM05D004761 ORTHO05D005813 1.4e-20 102.4 66 75.8
Ciclev10016274m.g Citrus clementina HOM05D004761 ORTHO05D005813 1.9e-20 102.1 66 75.8
Duzib248G0790 Durio zibethinus HOM05D004761 ORTHO05D005813 1.9e-20 102.1 66 74.2
CSS0041255 Camellia sinensis var. sinensis HOM05D004761 ORTHO05D005813 2.5e-20 101.7 66 75.8
Dinv21082 Davidia involucrata HOM05D004761 ORTHO05D005813 2.5e-20 101.7 70 72.9
Peaxi162Scf00382g00825 Petunia axillaris HOM05D004761 ORTHO05D005813 2.5e-20 101.7 66 75.8
TAR629G2706 Trochodendron aralioides HOM05D004761 ORTHO05D005813 2.5e-20 101.7 66 75.8
Gohir.A03G147200 Gossypium hirsutum HOM05D004761 ORTHO05D005813 3.2e-20 101.3 66 72.7
Gohir.D02G170400 Gossypium hirsutum HOM05D004761 ORTHO05D005813 3.2e-20 101.3 66 72.7
Gorai.005G191400 Gossypium raimondii HOM05D004761 ORTHO05D005813 3.2e-20 101.3 66 72.7
Os03g0219900 Oryza sativa ssp. japonica HOM05D004761 ORTHO05D005813 3.2e-20 101.3 66 72.7
Thecc.02G229900 Theobroma cacao HOM05D004761 ORTHO05D005813 3.2e-20 101.3 66 72.7
arahy.Tifrunner.gnm1.ann1.8WFG9Z Arachis hypogaea HOM05D004761 ORTHO05D005813 4.2e-20 100.9 66 77.3
arahy.Tifrunner.gnm1.ann1.B0KB7I Arachis hypogaea HOM05D004761 ORTHO05D005813 4.2e-20 100.9 66 77.3
arahy.Tifrunner.gnm1.ann1.QJ0JEK Arachis hypogaea HOM05D004761 ORTHO05D005813 4.2e-20 100.9 66 77.3
Eucgr.G02317 Eucalyptus grandis HOM05D004761 ORTHO05D005813 4.2e-20 100.9 66 74.2
THA.LOC104825698 Tarenaya hassleriana HOM05D004761 ORTHO05D005813 4.2e-20 100.9 66 72.7
Nitab4.5_0000791g0110 Nicotiana tabacum HOM05D004761 ORTHO05D005813 5.5e-20 100.5 66 75.8
Nitab4.5_0003373g0010 Nicotiana tabacum HOM05D004761 ORTHO05D005813 5.5e-20 100.5 66 75.8
Hund25060 Selenicereus undatus HOM05D004761 ORTHO05D005813 5.5e-20 100.5 65 76.9
arahy.Tifrunner.gnm1.ann1.BGN30W Arachis hypogaea HOM05D004761 ORTHO05D005813 9.3e-20 99.8 66 75.8
Lsat_1_v5_gn_3_59080 Lactuca sativa HOM05D004761 ORTHO05D005813 9.3e-20 99.8 66 74.2
Lj3C1014G6 Lonicera japonica HOM05D004761 ORTHO05D005813 9.3e-20 99.8 66 72.7
Lj5g0002032 Lotus japonicus HOM05D004761 ORTHO05D005813 9.3e-20 99.8 66 75.8
SEGI_01542 Sequoiadendron giganteum HOM05D004761 ORTHO05D005813 9.3e-20 99.8 66 72.7
MSTRG.843 Avicennia marina HOM05D004761 ORTHO05D005813 1.2e-19 99.4 66 72.7
DCAR_023656 Daucus carota HOM05D004761 ORTHO05D005813 1.2e-19 99.4 66 72.7
Prupe.1G311800 Prunus persica HOM05D004761 ORTHO05D005813 1.2e-19 99.4 66 74.2
Rhsim09G0107700 Rhododendron simsii HOM05D004761 ORTHO05D005813 1.2e-19 99.4 64 78.1
Cpa.g.sc1.34 Carica papaya HOM05D004761 ORTHO05D005813 1.6e-19 99.0 66 71.2
MD13G1041400 Malus domestica HOM05D004761 ORTHO05D005813 2.1e-19 98.6 66 72.7
MD16G1042300 Malus domestica HOM05D004761 ORTHO05D005813 2.1e-19 98.6 66 72.7
Zm00001eb008910 Zea mays HOM05D004761 ORTHO05D005813 2.1e-19 98.6 66 69.7
Gohir.D11G344800 Gossypium hirsutum HOM05D004761 ORTHO05D005813 2.7e-19 98.2 66 69.7
Gorai.007G375200 Gossypium raimondii HOM05D004761 ORTHO05D005813 2.7e-19 98.2 66 69.7
TWI79G0635 Tripterygium wilfordii HOM05D004761 ORTHO05D005813 2.7e-19 98.2 66 71.2
vmacro10560 Vaccinium macrocarpon HOM05D004761 ORTHO05D005813 2.7e-19 98.2 64 76.6
HPP92_009433 Vanilla planifolia HOM05D004761 ORTHO05D005813 2.7e-19 98.2 66 74.2
ECA246G4195 Erigeron canadensis HOM05D004761 ORTHO05D005813 3.5e-19 97.8 66 74.2
RcHm_v2.0_Chr4g0435111 Rosa chinensis HOM05D004761 ORTHO05D005813 3.5e-19 97.8 66 74.2
CANSAT01G0623 Cannabis sativa HOM05D004761 ORTHO05D005813 4.6e-19 97.4 66 69.7
FvH4_4g27310 Fragaria vesca HOM05D004761 ORTHO05D005813 7.9e-19 96.7 66 72.7
FAN07G1541 Fragaria x ananassa HOM05D004761 ORTHO05D005813 7.9e-19 96.7 66 72.7
FAN12G1206 Fragaria x ananassa HOM05D004761 ORTHO05D005813 7.9e-19 96.7 66 72.7
FAN12G1874 Fragaria x ananassa HOM05D004761 ORTHO05D005813 7.9e-19 96.7 66 72.7
FAN22G1660 Fragaria x ananassa HOM05D004761 ORTHO05D005813 7.9e-19 96.7 66 72.7
Aa31LG2G6400 Aethionema arabicum HOM05D004761 ORTHO05D005813 1.3e-18 95.9 66 66.7
Ca_11170_v3 Cicer arietinum L. HOM05D004761 ORTHO05D005813 1.3e-18 95.9 66 74.2
Aqoxy3G00293 Aquilegia oxysepala HOM05D004761 ORTHO05D005813 1.8e-18 95.5 64 73.4
Psat6g225000 Pisum sativum HOM05D004761 ORTHO05D005813 1.8e-18 95.5 66 72.7
SGA_v2.0_scaffold170G38770 Striga asiatica HOM05D004761 ORTHO05D005813 3.9e-18 94.4 66 71.2
TPR.G862 Trifolium pratense HOM05D004761 ORTHO05D005813 5.1e-18 94.0 66 72.7
TWI31G0637 Tripterygium wilfordii HOM05D004761 ORTHO05D005813 6.7e-18 93.6 66 68.2
AagrBONN_evm.TU.Sc2ySwM_228.2844 Anthoceros agrestis HOM05D004761 ORTHO05D005813 1.5e-17 92.4 66 68.2
BcaB07g30626 Brassica carinata HOM05D004761 ORTHO05D005813 1.9e-17 92.0 64 68.8
A09p25090 Brassica napus HOM05D004761 ORTHO05D005813 1.9e-17 92.0 64 68.8
C09p32130 Brassica napus HOM05D004761 ORTHO05D005813 1.9e-17 92.0 64 68.8
BraA09t38096Z Brassica rapa HOM05D004761 ORTHO05D005813 1.9e-17 92.0 64 68.8
Carub.0005s0378 Capsella rubella HOM05D004761 ORTHO05D005813 1.9e-17 92.0 64 68.8
Sp2g15160 Schrenkiella parvula HOM05D004761 ORTHO05D005813 1.9e-17 92.0 64 68.8
Gohir.A11G325900 Gossypium hirsutum HOM05D004761 ORTHO05D005813 3.3e-17 91.3 66 66.7
Lalb_Chr21g0308901 Lupinus albus HOM05D004761 ORTHO05D005813 3.3e-17 91.3 70 68.6
AL5G14580 Arabidopsis lyrata HOM05D004761 ORTHO05D005813 4.3e-17 90.9 64 67.2
BcaC06g31103 Brassica carinata HOM05D004761 ORTHO05D005813 4.3e-17 90.9 64 67.2
A06p42360 Brassica napus HOM05D004761 ORTHO05D005813 4.3e-17 90.9 64 67.2
C07p34980 Brassica napus HOM05D004761 ORTHO05D005813 4.3e-17 90.9 64 67.2
BolC7t44030H Brassica oleracea HOM05D004761 ORTHO05D005813 4.3e-17 90.9 64 67.2
BraA06t27151Z Brassica rapa HOM05D004761 ORTHO05D005813 4.3e-17 90.9 64 67.2
CARHR146910 Cardamine hirsuta HOM05D004761 ORTHO05D005813 4.3e-17 90.9 64 64.1
Thhalv10004759m.g Eutrema salsugineum HOM05D004761 ORTHO05D005813 4.3e-17 90.9 64 67.2
AT3G25920 Arabidopsis thaliana HOM05D004761 ORTHO05D005813 7.4e-17 90.1 64 65.6
BcaC04g21408 Brassica carinata HOM05D004761 ORTHO05D005813 9.7e-17 89.7 64 65.6
BolC9t56063H Brassica oleracea HOM05D004761 ORTHO05D005813 9.7e-17 89.7 64 65.6
MBI19_g21031_MAGBIO Magnolia biondii HOM05D004761 ORTHO05D005813 9.7e-17 89.7 88 55.7
Pp3c23_7670 Physcomitrium patens HOM05D004761 ORTHO05D005813 9.7e-17 89.7 66 71.2
Medtr1g110750 Medicago truncatula HOM05D004761 ORTHO05D005813 1.3e-16 89.4 66 68.2
BcaC06g33937 Brassica carinata HOM05D004761 ORTHO05D005813 1.6e-16 89.0 67 62.7
Lalb_Chr02g0145941 Lupinus albus HOM05D004761 ORTHO05D005813 1.6e-16 89.0 70 65.7
QL01p042268 Quercus lobata HOM05D004761 ORTHO05D005813 1.6e-16 89.0 52 80.8
Pp3c8_18220 Physcomitrium patens HOM05D004761 ORTHO05D005813 3.7e-16 87.8 66 69.7
Pp3c20_9200 Physcomitrium patens HOM05D004761 ORTHO05D005813 4.8e-16 87.4 66 69.7
Pp3c24_11450 Physcomitrium patens HOM05D004761 ORTHO05D005813 1.4e-15 85.9 66 68.2
SMO203G0084 Selaginella moellendorffii HOM05D004761 ORTHO05D005813 5.3e-15 84.0 66 62.1
COL.COLO4_29943 Corchorus olitorius HOM05D004761 ORTHO05D005813 9.0e-15 83.2 50 76.0
MELO3C012254.2 Cucumis melo HOM05D004761 ORTHO05D005813 9.0e-15 83.2 50 78.0
Mapoly0065s0007 Marchantia polymorpha HOM05D004761 ORTHO05D005813 1.2e-14 82.8 66 66.7
CBR_g6324 Chara braunii HOM05D004761 ORTHO05D005813 5.0e-13 77.4 65 58.5
arahy.Tifrunner.gnm1.ann1.V6GCEW Arachis hypogaea HOM05D004761 ORTHO05D005813 1.9e-12 75.5 50 74.0
HPP92_009407 Vanilla planifolia HOM05D004761 ORTHO05D005813 3.2e-12 74.7 68 55.9
Nn2g14253 Nelumbo nucifera HOM05D004761 ORTHO05D005813 9.4e-12 73.2 43 81.4
MCO09G351 Micromonas commoda HOM05D004761 ORTHO05D005813 3.0e-10 68.2 69 55.1
PRCOL_00000889 Prasinoderma coloniale HOM05D004761 ORTHO05D005813 3.3e-09 64.7 65 49.2
Potri.010G124301 Populus trichocarpa HOM05D004761 ORTHO05D005813 7.4e-09 63.5 47 63.8
Actinidia16656 Actinidia chinensis HOM05D004761 ORTHO05D005813 1.5e-06 55.8 66 48.5
Gohir.D02G170233 Gossypium hirsutum HOM05D004761 ORTHO05D005813 1.5e-06 55.8 46 58.7
Actinidia14894 Actinidia chinensis HOM05D004761 ORTHO05D005813 2.6e-06 55.1 35 77.1
Cre14.g612450 Chlamydomonas reinhardtii HOM05D004761 ORTHO05D005813 4.5e-06 54.3 65 49.2


User provided reference genes

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