Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc11g0003970 Simmondsia chinensis HOM05D005473 ORTHO05D006543 4.6e-189 664.5 348 100.0
Dinv04903 Davidia involucrata HOM05D005473 ORTHO05D006543 4.0e-124 448.7 345 68.1
QL01p003042 Quercus lobata HOM05D005473 ORTHO05D006543 3.2e-118 429.1 346 63.6
CSS0031478 Camellia sinensis var. sinensis HOM05D005473 ORTHO05D006543 9.4e-118 427.6 345 65.5
Hma1.2p1_0114F.1_g055460 Hydrangea macrophylla HOM05D005473 ORTHO05D006543 2.1e-117 426.4 344 66.3
AUR62002772 Chenopodium quinoa HOM05D005473 ORTHO05D006543 3.6e-117 425.6 346 63.9
AUR62037258 Chenopodium quinoa HOM05D005473 ORTHO05D006543 3.6e-117 425.6 346 63.9
CiPaw.05G245400 Carya illinoinensis HOM05D005473 ORTHO05D006543 4.4e-115 418.7 347 64.3
MSTRG.875 Avicennia marina HOM05D005473 ORTHO05D006543 8.3e-114 414.5 345 64.9
Cfa015813 Carpinus fangiana HOM05D000048 ORTHO05D000207 2.4e-113 412.9 345 62.6
Oeu059511.2 Olea europaea HOM05D005473 ORTHO05D006543 4.1e-113 412.1 346 62.4
GSVIVG01011804001 Vitis vinifera HOM05D005473 ORTHO05D006543 1.6e-112 410.2 343 63.0
Ciclev10015542m.g Citrus clementina HOM05D005473 ORTHO05D006543 5.9e-112 408.3 348 62.1
TAR622G1045 Trochodendron aralioides HOM05D005473 ORTHO05D006543 3.8e-111 405.6 345 60.6
SalBow8G1667 Salvia bowleyana HOM05D005473 ORTHO05D006543 8.6e-111 404.4 346 62.4
Prupe.1G320100 Prunus persica HOM05D005473 ORTHO05D006543 4.3e-110 402.1 345 60.9
vmacro01424 Vaccinium macrocarpon HOM05D005473 ORTHO05D006543 7.3e-110 401.4 350 61.4
EL10Ac6g14276 Beta vulgaris HOM05D005473 ORTHO05D006543 3.6e-109 399.1 370 59.5
CAN.G1489.13 Capsicum annuum HOM05D005473 ORTHO05D006543 1.8e-108 396.7 345 62.3
Nn4g24024 Nelumbo nucifera HOM05D005473 ORTHO05D006543 5.2e-108 395.2 345 60.0
Ah.03g138500 Amaranthus hybridus HOM05D005473 ORTHO05D006543 6.8e-108 394.8 341 60.7
Potri.008G126400 Populus trichocarpa HOM05D005473 ORTHO05D006543 8.9e-108 394.4 338 61.5
Solyc05g008520.3 Solanum lycopersicum HOM05D005473 ORTHO05D006543 2.6e-107 392.9 345 61.2
Haze_00685 Corylus avellana HOM05D005473 ORTHO05D006543 4.4e-107 392.1 388 55.4
Gohir.D05G319500 Gossypium hirsutum HOM05D005473 ORTHO05D006543 4.4e-107 392.1 347 58.5
Thecc.02G215500 Theobroma cacao HOM05D005473 ORTHO05D006543 5.7e-107 391.7 347 59.7
Sopen05g004360 Solanum pennellii HOM05D005473 ORTHO05D006543 7.5e-107 391.3 345 61.4
arahy.Tifrunner.gnm1.ann1.45PR62 Arachis hypogaea HOM05D005473 ORTHO05D006543 1.3e-106 390.6 349 60.7
RcHm_v2.0_Chr4g0434011 Rosa chinensis HOM05D005473 ORTHO05D006543 1.7e-106 390.2 345 59.4
PGSC0003DMG400030516 Solanum tuberosum HOM05D005473 ORTHO05D006543 3.7e-106 389.0 345 60.9
arahy.Tifrunner.gnm1.ann1.GULV0C Arachis hypogaea HOM05D005473 ORTHO05D006543 8.3e-106 387.9 349 59.9
Rhsim12G0088500 Rhododendron simsii HOM05D005473 ORTHO05D006543 8.3e-106 387.9 408 53.7
Migut.L01020 Erythranthe guttata HOM05D005473 ORTHO05D006543 1.8e-105 386.7 350 61.1
Gorai.009G342800 Gossypium raimondii HOM05D005473 ORTHO05D006543 5.4e-105 385.2 348 58.3
VMungo0720G0454 Vigna mungo HOM05D005473 ORTHO05D006543 1.6e-104 383.6 345 59.4
HanXRQChr15g0477691 Helianthus annuus HOM05D005473 ORTHO05D006543 3.5e-104 382.5 343 58.6
Cc11_g09260 Coffea canephora HOM05D005473 ORTHO05D006543 4.6e-104 382.1 346 60.4
Lj5g0028089 Lotus japonicus HOM05D005473 ORTHO05D006543 1.0e-103 380.9 346 59.2
COL.COLO4_20121 Corchorus olitorius HOM05D005473 ORTHO05D006543 1.7e-103 380.2 345 56.5
FAN22G1873 Fragaria x ananassa HOM05D005473 ORTHO05D006543 1.7e-103 380.2 345 58.0
Sabra08G0095200 Salix brachista HOM05D005473 ORTHO05D006543 1.7e-103 380.2 338 59.8
Sed0015008 Sechium edule HOM05D005473 ORTHO05D006543 2.3e-103 379.8 346 60.1
FvH4_4g26380 Fragaria vesca HOM05D005473 ORTHO05D006543 3.0e-103 379.4 345 58.0
FAN12G0751 Fragaria x ananassa HOM05D005473 ORTHO05D006543 3.9e-103 379.0 345 57.7
FAN12G1468 Fragaria x ananassa HOM05D005473 ORTHO05D006543 3.9e-103 379.0 345 57.7
Phvul.007G034400 Phaseolus vulgaris HOM05D005473 ORTHO05D006543 3.9e-103 379.0 344 59.6
Ca_30210_v3 Cicer arietinum L. HOM05D005473 ORTHO05D006543 8.6e-103 377.9 348 59.8
FAN17G2750 Fragaria x ananassa HOM05D005473 ORTHO05D006543 8.6e-103 377.9 345 57.4
Glyma.20G123200 Glycine max HOM05D005473 ORTHO05D006543 1.5e-102 377.1 346 60.1
Sabra16G0274100 Salix brachista HOM05D005473 ORTHO05D006543 1.9e-102 376.7 338 59.2
ClCG05G022330 Citrullus lanatus HOM05D005473 ORTHO05D006543 4.3e-102 375.6 347 60.5
Manes.14G109600 Manihot esculenta HOM05D005473 ORTHO05D006543 4.3e-102 375.6 345 56.8
Gohir.A05G317600 Gossypium hirsutum HOM05D005473 ORTHO05D006543 1.6e-101 373.6 347 56.5
Medtr1g109070 Medicago truncatula HOM05D005473 ORTHO05D006543 1.6e-101 373.6 348 59.2
Lsat_1_v5_gn_3_54040 Lactuca sativa HOM05D005473 ORTHO05D006543 2.8e-101 372.9 343 57.7
TPR.G4908 Trifolium pratense HOM05D005473 ORTHO05D006543 8.0e-101 371.3 347 58.8
Psat6g222680 Pisum sativum HOM05D005473 ORTHO05D006543 1.0e-100 370.9 346 58.7
Actinidia31990 Actinidia chinensis HOM05D005473 ORTHO05D006543 3.1e-100 369.4 321 62.0
FAN07G2597 Fragaria x ananassa HOM05D005473 ORTHO05D006543 3.1e-100 369.4 345 56.2
Eucgr.K00649 Eucalyptus grandis HOM05D005473 ORTHO05D006543 6.8e-100 368.2 343 56.6
Lalb_Chr06g0165731 Lupinus albus HOM05D005473 ORTHO05D006543 1.5e-99 367.1 344 58.4
SGA_v2.0_scaffold50G18546 Striga asiatica HOM05D005473 ORTHO05D006543 2.0e-99 366.7 346 59.2
Dinv16166 Davidia involucrata HOM05D005473 ORTHO05D006543 4.4e-99 365.5 345 58.0
Atru.chr11.335 Acer truncatum HOM05D005473 ORTHO05D006543 1.3e-98 364.0 347 55.6
CsaV3_5G034770 Cucumis sativus L. HOM05D005473 ORTHO05D006543 1.3e-98 364.0 347 59.1
Peaxi162Scf00205g01024 Petunia axillaris HOM05D000048 ORTHO05D006543 1.3e-98 364.0 306 63.4
ECA246G4292 Erigeron canadensis HOM05D005473 ORTHO05D006543 1.7e-98 363.6 349 58.2
Lj3A877T94 Lonicera japonica HOM05D005473 ORTHO05D006543 6.4e-98 361.7 388 53.6
PGR119G2355 Punica granatum HOM05D005473 ORTHO05D006543 3.3e-94 349.4 346 54.6
Cpa.g.sc65.93 Carica papaya HOM05D005473 ORTHO05D006543 6.2e-93 345.1 345 55.4
CANSAT01G2653 Cannabis sativa HOM05D005473 ORTHO05D006543 1.1e-92 344.4 346 52.9
Nitab4.5_0013146g0010 Nicotiana tabacum HOM05D005473 ORTHO05D006543 1.5e-91 340.5 287 63.4
Atru.chr11.342 Acer truncatum HOM05D005473 ORTHO05D006543 2.6e-91 339.7 322 55.3
Aa31LG7G6980 Aethionema arabicum HOM05D005473 ORTHO05D006543 1.3e-90 337.4 347 50.7
DCAR_023622 Daucus carota HOM05D005473 ORTHO05D006543 3.5e-88 329.3 302 60.6
Aqoxy5G03875 Aquilegia oxysepala HOM05D005473 ORTHO05D006543 3.9e-87 325.9 347 51.3
PSO017G4790 Papaver somniferum HOM05D005473 ORTHO05D006543 1.9e-86 323.6 350 51.1
Ca_23703_v3 Cicer arietinum L. HOM05D005473 ORTHO05D006543 4.3e-86 322.4 348 54.0
MBI16_g29822_MAGBIO Magnolia biondii HOM05D005473 ORTHO05D006543 2.1e-85 320.1 351 50.7
CARHR023350 Cardamine hirsuta HOM05D005473 ORTHO05D006543 2.2e-82 310.1 346 50.6
BraA09t39663Z Brassica rapa HOM05D005473 ORTHO05D006543 2.9e-82 309.7 346 48.8
Thhalv10008033m.g Eutrema salsugineum HOM05D005473 ORTHO05D006543 8.4e-82 308.1 346 49.4
AT1G22970 Arabidopsis thaliana HOM05D005473 ORTHO05D006543 1.4e-81 307.4 346 49.7
A09p41740 Brassica napus HOM05D005473 ORTHO05D006543 1.4e-81 307.4 346 49.1
AL1G36530 Arabidopsis lyrata HOM05D005473 ORTHO05D006543 1.9e-81 307.0 346 49.7
AL2G30760 Arabidopsis lyrata HOM05D005473 ORTHO05D006543 2.4e-81 306.6 347 49.6
PSO478G0709 Papaver somniferum HOM05D005473 ORTHO05D006543 2.4e-81 306.6 350 49.7
BraA07t31315Z Brassica rapa HOM05D005473 ORTHO05D006543 5.4e-81 305.4 347 49.3
PSO782G5692 Papaver somniferum HOM05D005473 ORTHO05D006543 5.4e-81 305.4 350 49.1
MELO3C012289.2 Cucumis melo HOM05D005473 ORTHO05D006543 1.3e-79 300.8 289 58.1
Carub.0001s2247 Capsella rubella HOM05D005473 ORTHO05D006543 8.6e-79 298.1 346 48.8
C05p22180 Brassica napus HOM05D005473 ORTHO05D006543 7.3e-78 295.0 349 46.7
Potri.010G117100 Populus trichocarpa HOM05D005473 ORTHO05D006543 1.1e-76 291.2 288 55.6
BcaB07g32295 Brassica carinata HOM05D005473 ORTHO05D006543 5.2e-76 288.9 348 47.7
AT1G71150 Arabidopsis thaliana HOM05D005473 ORTHO05D006543 6.8e-76 288.5 348 46.8
THA.LOC104812031 Tarenaya hassleriana HOM05D005473 ORTHO05D006543 6.8e-76 288.5 298 53.4
Sp5g26320 Schrenkiella parvula HOM05D005473 ORTHO05D006543 1.2e-75 287.7 349 47.0
CDE07G0910 Ceratophyllum demersum HOM05D005473 ORTHO05D006543 2.0e-75 287.0 345 46.1
CARHR064450 Cardamine hirsuta HOM05D005473 ORTHO05D006543 2.2e-74 283.5 349 46.7
BolC5t30918H Brassica oleracea HOM05D005473 ORTHO05D006543 4.9e-74 282.3 349 45.6
Sp1g20430 Schrenkiella parvula HOM05D005473 ORTHO05D006543 4.9e-74 282.3 346 46.2
BcaC05g26209 Brassica carinata HOM05D005473 ORTHO05D006543 8.4e-74 281.6 349 45.6
unitig_749.g14005 Utricularia gibba HOM05D005473 ORTHO05D006543 7.1e-73 278.5 290 54.1
ATR0691G101 Amborella trichopoda HOM05D005473 ORTHO05D006543 1.6e-72 277.3 372 45.2
BcaC08g46554 Brassica carinata HOM05D005473 ORTHO05D006543 1.7e-71 273.9 347 45.2
Carub.0002s1804 Capsella rubella HOM05D005473 ORTHO05D006543 1.7e-71 273.9 349 44.7
TWI79G1332 Tripterygium wilfordii HOM05D005473 ORTHO05D006543 3.0e-71 273.1 339 46.6
Duzib268G1740 Durio zibethinus HOM05D005473 ORTHO05D006543 5.6e-70 268.9 266 54.1
BolC6t39580H Brassica oleracea HOM05D005473 ORTHO05D006543 9.6e-70 268.1 342 44.7
BcaB03g14874 Brassica carinata HOM05D005473 ORTHO05D006543 1.4e-68 264.2 303 49.8
HPP92_020137 Vanilla planifolia HOM05D005473 ORTHO05D006543 3.8e-66 256.1 343 44.0
Os05g0554500 Oryza sativa ssp. japonica HOM05D005473 ORTHO05D006543 1.7e-63 247.3 341 40.8
Zm00001eb295130 Zea mays HOM05D005473 ORTHO05D006543 2.1e-61 240.4 348 38.2
AT1G22980 Arabidopsis thaliana HOM05D005473 ORTHO05D006543 3.4e-59 233.0 346 40.5
HanXRQChr15g0477701 Helianthus annuus HOM05D005473 ORTHO05D006543 5.5e-57 225.7 349 41.5
A07p37530 Brassica napus HOM05D000048 ORTHO05D006543 7.1e-57 225.3 345 39.4
Thecc.02G215400 Theobroma cacao HOM05D005473 ORTHO05D006543 1.2e-56 224.6 221 54.3
AL1G36540 Arabidopsis lyrata HOM05D005473 ORTHO05D006543 1.6e-56 224.2 347 40.1
Migut.O00950 Erythranthe guttata HOM05D005473 ORTHO05D006543 3.0e-55 219.9 220 56.8
Glyma.10G267900 Glycine max HOM05D005473 ORTHO05D006543 3.9e-55 219.5 227 54.2
Actinidia33629 Actinidia chinensis HOM05D005473 ORTHO05D006543 2.1e-53 213.8 229 54.6
Thhalv10018995m.g Eutrema salsugineum HOM05D005473 ORTHO05D006543 8.1e-53 211.8 259 47.9
SEGI_09717 Sequoiadendron giganteum HOM05D005473 ORTHO05D006543 7.6e-51 205.3 347 38.6
Duzib251G0055 Durio zibethinus HOM05D005473 ORTHO05D006543 1.6e-45 187.6 274 42.7
A01p19890 Brassica napus HOM05D005473 ORTHO05D006543 3.7e-45 186.4 219 46.6
Hund25017 Selenicereus undatus HOM05D005473 ORTHO05D006543 2.4e-44 183.7 127 74.0
Rhsim03G0134600 Rhododendron simsii HOM05D005473 ORTHO05D006543 3.8e-42 176.4 219 48.9
AagrBONN_evm.TU.Sc2ySwM_344.5342 Anthoceros agrestis HOM05D005473 ORTHO05D006543 5.1e-39 166.0 350 34.3
PSO384G2466 Papaver somniferum HOM05D005473 ORTHO05D006543 1.5e-38 164.5 298 37.9
SMO202G0044 Selaginella moellendorffii HOM05D005473 ORTHO05D006543 9.7e-38 161.8 316 34.5
Pp3c15_5840 Physcomitrium patens HOM05D005473 ORTHO05D006543 1.2e-32 144.8 425 27.5
C06p45240 Brassica napus HOM05D000048 ORTHO05D000207 1.4e-28 131.3 125 51.2
C06p45250 Brassica napus HOM05D005473 ORTHO05D006543 2.5e-25 120.6 182 40.1
Oeu036129.1 Olea europaea HOM05D005473 ORTHO05D006543 7.9e-24 115.5 154 49.4
PSO339G4228 Papaver somniferum HOM05D005473 ORTHO05D006543 1.3e-21 108.2 357 28.9
CBR_g3993 Chara braunii HOM05D005493 ORTHO05D007154 1.2e-19 101.7 163 36.2
MSTRG.15906 Avicennia marina HOM05D005473 ORTHO05D006543 3.3e-14 83.6 62 69.4
MD13G1032300 Malus domestica HOM05D005473 ORTHO05D006543 7.0e-12 75.9 55 69.1
MD16G1034500 Malus domestica HOM05D005473 ORTHO05D006543 1.6e-11 74.7 55 67.3
AagrBONN_evm.TU.Sc2ySwM_117.2697 Anthoceros agrestis HOM05D005473 ORTHO05D006543 4.5e-11 73.2 215 31.6
CAN.G572.16 Capsicum annuum HOM05D005473 ORTHO05D006543 3.2e-09 67.0 134 37.3
PGR142G1573 Punica granatum HOM05D005473 ORTHO05D006543 3.0e-07 60.5 243 24.7
MCO05G366 Micromonas commoda HOM05D005473 ORTHO05D006543 4.0e-07 60.1 206 24.8


User provided reference genes

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