Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc11g0003960 Simmondsia chinensis HOM05D007426 ORTHO05D009167 5.2e-167 592.4 318 100.0
QL01p003061 Quercus lobata HOM05D007426 ORTHO05D009167 3.3e-60 237.7 211 55.9
CSS0006507 Camellia sinensis var. sinensis HOM05D007426 ORTHO05D009167 4.4e-57 227.3 219 52.5
Nn3g17999 Nelumbo nucifera HOM05D007426 ORTHO05D009167 7.5e-57 226.5 209 55.0
Dinv04907 Davidia involucrata HOM05D007426 ORTHO05D009167 4.1e-55 220.7 176 59.1
Manes.06G063200 Manihot esculenta HOM05D007426 ORTHO05D009167 7.0e-55 219.9 208 50.0
MD13G1032800 Malus domestica HOM05D007426 ORTHO05D009167 7.8e-54 216.5 215 49.3
MD16G1034800 Malus domestica HOM05D007426 ORTHO05D009167 2.3e-53 214.9 215 48.8
MELO3C012287.2 Cucumis melo HOM05D007426 ORTHO05D009167 1.5e-52 212.2 206 49.5
CiPaw.05G245100 Carya illinoinensis HOM05D007426 ORTHO05D009167 5.6e-52 210.3 197 52.3
ClCG04G001050 Citrullus lanatus HOM05D007426 ORTHO05D009167 5.6e-52 210.3 199 51.8
Aqoxy3G03989 Aquilegia oxysepala HOM05D007426 ORTHO05D009167 7.3e-52 209.9 227 48.5
Lj3A877T95 Lonicera japonica HOM05D007426 ORTHO05D009167 9.5e-52 209.5 225 49.3
TAR629G2850 Trochodendron aralioides HOM05D007426 ORTHO05D009167 1.6e-51 208.8 209 49.8
Haze_00680 Corylus avellana HOM05D007426 ORTHO05D009167 3.6e-51 207.6 191 55.0
COL.COLO4_35570 Corchorus olitorius HOM05D002230 ORTHO05D002441 6.2e-51 206.8 192 50.0
GSVIVG01011807001 Vitis vinifera HOM05D000798 ORTHO05D000659 8.0e-51 206.5 200 53.5
CsaV3_5G034750 Cucumis sativus L. HOM05D007426 ORTHO05D009167 5.2e-50 203.8 204 49.5
Ciclev10017504m.g Citrus clementina HOM05D007426 ORTHO05D009167 9.8e-49 199.5 213 45.5
Eucgr.G00774 Eucalyptus grandis HOM05D007426 ORTHO05D009167 9.8e-49 199.5 203 50.7
Sed0007337 Sechium edule HOM05D007426 ORTHO05D009167 1.7e-48 198.7 196 51.5
CANSAT01G1275 Cannabis sativa HOM05D007426 ORTHO05D009167 8.3e-48 196.4 206 51.9
Rhsim09G0137400 Rhododendron simsii HOM05D007426 ORTHO05D009167 2.4e-47 194.9 219 48.4
Gorai.005G194300 Gossypium raimondii HOM05D007426 ORTHO05D009167 3.2e-47 194.5 213 46.0
Gohir.D02G172600 Gossypium hirsutum HOM05D007426 ORTHO05D009167 5.4e-47 193.7 214 46.7
Atru.chr11.331 Acer truncatum HOM05D007426 ORTHO05D009167 1.2e-46 192.6 225 42.7
Gohir.A03G149700 Gossypium hirsutum HOM05D007426 ORTHO05D009167 1.6e-46 192.2 178 50.6
Hma1.2p1_0882F.1_g232200 Hydrangea macrophylla HOM05D007426 ORTHO05D009167 1.6e-46 192.2 220 47.7
Duzib248G0356 Durio zibethinus HOM05D007426 ORTHO05D009167 1.0e-45 189.5 194 51.5
RcHm_v2.0_Chr4g0434041 Rosa chinensis HOM05D007426 ORTHO05D009167 6.6e-45 186.8 197 48.7
Cc11_g09290 Coffea canephora HOM05D007426 ORTHO05D009167 3.3e-44 184.5 202 45.0
THA.LOC104821759 Tarenaya hassleriana HOM05D007426 ORTHO05D009167 1.2e-43 182.6 209 45.0
PGSC0003DMG402030517 Solanum tuberosum HOM05D007426 ORTHO05D009167 2.1e-43 181.8 185 47.0
PGR119G0474 Punica granatum HOM05D007426 ORTHO05D009167 6.2e-43 180.3 210 42.9
Sopen05g004400 Solanum pennellii HOM05D007426 ORTHO05D009167 6.2e-43 180.3 194 46.4
MSTRG.13563 Avicennia marina HOM05D007426 ORTHO05D009167 8.1e-43 179.9 174 47.7
Solyc05g008560.1 Solanum lycopersicum HOM05D007426 ORTHO05D009167 2.3e-42 178.3 194 45.4
Nitab4.5_0000350g0090 Nicotiana tabacum HOM05D007426 ORTHO05D009167 4.0e-42 177.6 194 44.8
TWI79G0655 Tripterygium wilfordii HOM05D007426 ORTHO05D009167 1.5e-41 175.6 189 46.0
SGA_v2.0_scaffold376G50296 Striga asiatica HOM05D007426 ORTHO05D009167 4.4e-41 174.1 174 46.0
vmacro10360 Vaccinium macrocarpon HOM05D007426 ORTHO05D009167 5.8e-41 173.7 207 44.9
Nitab4.5_0003886g0020 Nicotiana tabacum HOM05D007426 ORTHO05D009167 2.2e-40 171.8 179 45.8
Lsat_1_v5_gn_4_15701 Lactuca sativa HOM05D007426 ORTHO05D009167 4.1e-39 167.5 239 39.7
Cpa.g.sc65.89 Carica papaya HOM05D007426 ORTHO05D009167 5.4e-39 167.2 196 42.9
FAN12G1804 Fragaria x ananassa HOM05D007426 ORTHO05D009167 3.5e-38 164.5 209 44.0
Aa31LG7G6970 Aethionema arabicum HOM05D007426 ORTHO05D009167 6.0e-38 163.7 197 41.6
CDE04G0172 Ceratophyllum demersum HOM05D007426 ORTHO05D009167 6.0e-38 163.7 222 40.1
Ca_12586_v3 Cicer arietinum L. HOM05D007426 ORTHO05D009167 7.8e-38 163.3 159 52.8
Actinidia34749 Actinidia chinensis HOM05D007426 ORTHO05D009167 1.0e-37 162.9 194 45.9
Phvul.003G029100 Phaseolus vulgaris HOM05D007426 ORTHO05D009167 1.3e-37 162.5 150 56.0
Lalb_Chr10g0096341 Lupinus albus HOM05D007426 ORTHO05D009167 1.7e-37 162.2 138 58.7
Psat6g044600 Pisum sativum HOM05D007426 ORTHO05D009167 1.7e-37 162.2 149 55.7
MBI02_g38361_MAGBIO Magnolia biondii HOM05D007426 ORTHO05D009167 3.0e-37 161.4 148 53.4
VMungo1215G1392 Vigna mungo HOM05D007426 ORTHO05D009167 3.0e-37 161.4 150 55.3
DCAR_023623 Daucus carota HOM05D007426 ORTHO05D009167 1.1e-36 159.5 144 53.5
FAN12G0928 Fragaria x ananassa HOM05D007426 ORTHO05D009167 2.5e-36 158.3 210 44.3
Thhalv10006897m.g Eutrema salsugineum HOM05D007426 ORTHO05D009167 4.3e-36 157.5 153 48.4
arahy.Tifrunner.gnm1.ann1.A3A4LS Arachis hypogaea HOM05D007426 ORTHO05D009167 7.3e-36 156.8 224 42.4
SalBow8G0581 Salvia bowleyana HOM05D007426 ORTHO05D009167 4.7e-35 154.1 163 43.6
arahy.Tifrunner.gnm1.ann1.5H8JFW Arachis hypogaea HOM05D003289 ORTHO05D009167 6.2e-35 153.7 222 41.9
Medtr1g031720 Medicago truncatula HOM05D007426 ORTHO05D009167 2.3e-34 151.8 156 50.0
Glyma.13G034900 Glycine max HOM05D007426 ORTHO05D009167 8.9e-34 149.8 151 51.7
Glyma.14G156100 Glycine max HOM05D007426 ORTHO05D009167 2.0e-33 148.7 151 50.3
CAN.G1489.16 Capsicum annuum HOM05D007426 ORTHO05D009167 2.6e-33 148.3 238 39.9
Carub.0001s2246 Capsella rubella HOM05D007426 ORTHO05D009167 9.9e-33 146.4 193 38.9
BcaC05g26208 Brassica carinata HOM05D007426 ORTHO05D009167 2.2e-32 145.2 188 41.0
C05p22170 Brassica napus HOM05D007426 ORTHO05D009167 2.2e-32 145.2 188 41.0
BolC5t30917H Brassica oleracea HOM05D007426 ORTHO05D009167 2.2e-32 145.2 188 41.0
Lj2g0001206 Lotus japonicus HOM05D007426 ORTHO05D009167 2.2e-32 145.2 142 52.8
Sp1g20420 Schrenkiella parvula HOM05D007426 ORTHO05D009167 3.8e-32 144.4 171 42.1
HPP92_023011 Vanilla planifolia HOM05D007426 ORTHO05D009167 3.8e-32 144.4 151 49.0
CARHR023340 Cardamine hirsuta HOM05D007426 ORTHO05D009167 6.4e-32 143.7 152 46.1
ECA234G2171 Erigeron canadensis HOM05D007426 ORTHO05D009167 1.4e-31 142.5 152 46.1
AL1G36520 Arabidopsis lyrata HOM05D007426 ORTHO05D009167 3.2e-31 141.4 141 48.9
CSS0028756 Camellia sinensis var. sinensis HOM05D007426 ORTHO05D009167 7.8e-30 136.7 93 68.8
AT1G22960 Arabidopsis thaliana HOM05D007426 ORTHO05D009167 1.3e-29 136.0 144 46.5
BraA09t39664Z Brassica rapa HOM05D007426 ORTHO05D009167 5.1e-29 134.0 175 39.4
Oeu048376.1 Olea europaea HOM05D007426 ORTHO05D009167 5.1e-29 134.0 187 41.2
Migut.E00390 Erythranthe guttata HOM05D007426 ORTHO05D009167 3.6e-27 127.9 210 35.2
A09p41750 Brassica napus HOM05D007426 ORTHO05D009167 1.1e-26 126.3 170 38.2
A01p19900 Brassica napus HOM05D007426 ORTHO05D009167 3.1e-26 124.8 170 37.6
BcaB07g32294 Brassica carinata HOM05D007426 ORTHO05D009167 8.9e-26 123.2 137 42.3
ATR0579G149 Amborella trichopoda HOM05D007426 ORTHO05D009167 7.6e-25 120.2 139 43.2
Cfa015816 Carpinus fangiana HOM05D007426 ORTHO05D009167 6.0e-22 110.5 75 68.0
TPR.G36966 Trifolium pratense HOM05D007426 ORTHO05D009167 3.9e-21 107.8 148 43.9
FvH4_4g26410 Fragaria vesca HOM05D007426 ORTHO05D009167 1.9e-20 105.5 104 52.9
FAN17G2923 Fragaria x ananassa HOM05D007426 ORTHO05D009167 1.3e-16 92.8 95 52.6
SEGI_36761 Sequoiadendron giganteum HOM05D007426 ORTHO05D009167 2.4e-15 88.6 183 29.0
CDE07G1153 Ceratophyllum demersum HOM05D007426 ORTHO05D009167 4.2e-15 87.8 78 53.8
BcaB03g11918 Brassica carinata HOM05D007426 ORTHO05D009167 1.6e-14 85.9 94 46.8
FAN07G1506 Fragaria x ananassa HOM05D007426 ORTHO05D009167 1.6e-14 85.9 75 57.3
Oeu048390.1 Olea europaea HOM05D000798 ORTHO05D000659 2.1e-11 75.5 146 33.6
Zm00001eb406750 Zea mays HOM05D025020 ORTHO05D009167 1.1e-10 73.2 147 37.4
Zm00001eb164150 Zea mays HOM05D025020 ORTHO05D009167 4.0e-10 71.2 145 38.6
Ah.02g120040 Amaranthus hybridus HOM05D007496 ORTHO05D009479 2.6e-09 68.6 181 26.5
ATR0782G042 Amborella trichopoda HOM05D006287 ORTHO05D008192 2.6e-09 68.6 166 29.5
Zm00001eb118640 Zea mays HOM05D025020 ORTHO05D009167 2.6e-09 68.6 145 37.9
EL10Ac6g15406 Beta vulgaris HOM05D007496 ORTHO05D009479 5.8e-09 67.4 181 24.3
SEGI_21882 Sequoiadendron giganteum HOM05D007750 ORTHO05D009431 9.9e-09 66.6 134 28.4
MD13G1010200 Malus domestica HOM05D007496 ORTHO05D009479 1.7e-08 65.9 188 28.7
Os12g0152600 Oryza sativa ssp. japonica HOM05D025020 ORTHO05D009167 2.2e-08 65.5 148 35.1
SEGI_39034 Sequoiadendron giganteum HOM05D007675 ORTHO05D009699 3.8e-08 64.7 160 26.9
Nn3g20345 Nelumbo nucifera HOM05D006287 ORTHO05D008192 6.4e-08 63.9 173 25.4
Thecc.02G296100 Theobroma cacao HOM05D007496 ORTHO05D009479 8.4e-08 63.5 195 22.6
Dinv28147 Davidia involucrata HOM05D007496 ORTHO05D009479 1.1e-07 63.2 183 27.9
Nn1g01012 Nelumbo nucifera HOM05D007496 ORTHO05D009479 4.2e-07 61.2 189 25.4
AUR62017779 Chenopodium quinoa HOM05D007496 ORTHO05D009479 5.5e-07 60.8 181 23.2
MBI08_g04815_MAGBIO Magnolia biondii HOM05D006287 ORTHO05D008192 5.5e-07 60.8 138 25.4
Atru.chr11.1049 Acer truncatum HOM05D007496 ORTHO05D009479 7.1e-07 60.5 189 25.9
Psat2g188560 Pisum sativum HOM05D000424 ORTHO05D000355 7.1e-07 60.5 211 26.5
Psat2g188600 Pisum sativum HOM05D000424 ORTHO05D000355 7.1e-07 60.5 211 26.5
Sabra10G0070900 Salix brachista HOM05D007496 ORTHO05D009479 9.3e-07 60.1 190 26.3
CSS0048694 Camellia sinensis var. sinensis HOM05D006287 ORTHO05D008192 1.2e-06 59.7 152 30.3
Cc10_g03430 Coffea canephora HOM05D007639 ORTHO05D009509 1.6e-06 59.3 130 26.2
Psat6g220560 Pisum sativum HOM05D000424 ORTHO05D000355 1.6e-06 59.3 211 26.5
TPR.G9703 Trifolium pratense HOM05D007426 ORTHO05D009167 2.1e-06 58.9 101 34.7
Zm00001eb197020 Zea mays HOM05D025020 ORTHO05D009167 2.7e-06 58.5 146 31.5
Peaxi162Scf00057g00149 Petunia axillaris HOM05D000909 ORTHO05D009509 3.5e-06 58.2 130 23.8
ATR0782G035 Amborella trichopoda HOM05D006287 ORTHO05D008192 4.6e-06 57.8 126 29.4
Sed0007352 Sechium edule HOM05D007639 ORTHO05D009509 4.6e-06 57.8 133 30.1
THA.LOC104814860 Tarenaya hassleriana HOM05D007212 ORTHO05D009094 4.6e-06 57.8 141 30.5
Nn5g27729 Nelumbo nucifera HOM05D006287 ORTHO05D008192 6.0e-06 57.4 167 24.6
TWI74G0969 Tripterygium wilfordii HOM05D007103 ORTHO05D008948 6.0e-06 57.4 186 25.3
CSS0042508 Camellia sinensis var. sinensis HOM05D006287 ORTHO05D008192 7.9e-06 57.0 207 29.0


User provided reference genes

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