Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc11g0003950 Simmondsia chinensis HOM05D004069 ORTHO05D004699 2.9e-57 224.9 107 100.0
vmacro08226 Vaccinium macrocarpon HOM05D004069 ORTHO05D004699 1.4e-48 196.1 106 83.0
Nitab4.5_0001714g0140 Nicotiana tabacum HOM05D004069 ORTHO05D004699 3.5e-47 191.4 103 85.4
Nitab4.5_0009882g0010 Nicotiana tabacum HOM05D004069 ORTHO05D004699 3.5e-47 191.4 103 85.4
PGSC0003DMG400022739 Solanum tuberosum HOM05D004069 ORTHO05D004699 6.0e-47 190.7 105 82.9
Cc03_g02560 Coffea canephora HOM05D004069 ORTHO05D004699 7.8e-47 190.3 104 83.7
CSS0012120 Camellia sinensis var. sinensis HOM05D004069 ORTHO05D004699 1.7e-46 189.1 106 80.2
Prupe.1G144300 Prunus persica HOM05D004069 ORTHO05D004699 3.9e-46 188.0 104 81.7
Sed0000717 Sechium edule HOM05D004069 ORTHO05D004699 3.9e-46 188.0 104 80.8
HanXRQChr13g0410171 Helianthus annuus HOM05D004069 ORTHO05D004699 5.1e-46 187.6 104 79.8
Sabra08G0163600 Salix brachista HOM05D004069 ORTHO05D004699 5.1e-46 187.6 106 81.1
Solyc08g080240.3 Solanum lycopersicum HOM05D004069 ORTHO05D004699 6.6e-46 187.2 103 82.5
Sopen08g028590 Solanum pennellii HOM05D004069 ORTHO05D004699 6.6e-46 187.2 103 82.5
CAN.G981.42 Capsicum annuum HOM05D004069 ORTHO05D004699 8.6e-46 186.8 102 83.3
Eucgr.H03663 Eucalyptus grandis HOM05D004069 ORTHO05D004699 8.6e-46 186.8 104 80.8
Manes.03G189600 Manihot esculenta HOM05D004069 ORTHO05D004699 8.6e-46 186.8 104 80.8
Peaxi162Scf00620g00918 Petunia axillaris HOM05D004069 ORTHO05D004699 8.6e-46 186.8 103 83.5
MD10G1048000 Malus domestica HOM05D004069 ORTHO05D004699 1.1e-45 186.4 104 80.8
Potri.008G196600 Populus trichocarpa HOM05D004069 ORTHO05D004699 1.1e-45 186.4 106 80.2
Hma1.2p1_1671F.1_g296710 Hydrangea macrophylla HOM05D004069 ORTHO05D004699 1.5e-45 186.0 102 82.4
GSVIVG01017834001 Vitis vinifera HOM05D004069 ORTHO05D004699 1.5e-45 186.0 104 81.7
CsaV3_1G037430 Cucumis sativus L. HOM05D004069 ORTHO05D004699 1.9e-45 185.7 104 79.8
Lsat_1_v5_gn_5_49720 Lactuca sativa HOM05D004069 ORTHO05D004699 1.9e-45 185.7 104 78.8
Actinidia23443 Actinidia chinensis HOM05D004069 ORTHO05D004699 2.5e-45 185.3 103 80.6
Nn4g26079 Nelumbo nucifera HOM05D004069 ORTHO05D004699 2.5e-45 185.3 105 80.0
Sabra10G0013600 Salix brachista HOM05D004069 ORTHO05D004699 2.5e-45 185.3 106 79.2
DCAR_002434 Daucus carota HOM05D004069 ORTHO05D004699 3.3e-45 184.9 105 81.0
CiPaw.01G155300 Carya illinoinensis HOM05D004069 ORTHO05D004699 5.6e-45 184.1 104 77.9
Hma1.2p1_0078F.1_g040910 Hydrangea macrophylla HOM05D004069 ORTHO05D004699 5.6e-45 184.1 102 81.4
Potri.010G026000 Populus trichocarpa HOM05D004069 ORTHO05D004699 9.5e-45 183.3 106 78.3
RcHm_v2.0_Chr4g0420511 Rosa chinensis HOM05D004069 ORTHO05D004699 9.5e-45 183.3 104 78.8
CANSAT54G0205 Cannabis sativa HOM05D004069 ORTHO05D004699 1.2e-44 183.0 104 78.8
Sed0022789 Sechium edule HOM05D004069 ORTHO05D004699 1.2e-44 183.0 105 79.0
TWI73G0788 Tripterygium wilfordii HOM05D004069 ORTHO05D004699 1.6e-44 182.6 104 78.8
Actinidia32378 Actinidia chinensis HOM05D004069 ORTHO05D004699 2.1e-44 182.2 103 77.7
ATR0208G034 Amborella trichopoda HOM05D004069 ORTHO05D004699 2.1e-44 182.2 104 79.8
HanXRQChr03g0079731 Helianthus annuus HOM05D004069 ORTHO05D004699 2.1e-44 182.2 104 76.9
TWI09G1514 Tripterygium wilfordii HOM05D004069 ORTHO05D004699 2.1e-44 182.2 104 78.8
Cfa015517 Carpinus fangiana HOM05D004069 ORTHO05D004699 2.8e-44 181.8 104 77.9
MD05G1041600 Malus domestica HOM05D004069 ORTHO05D004699 2.8e-44 181.8 104 77.9
Manes.15G019000 Manihot esculenta HOM05D004069 ORTHO05D004699 2.8e-44 181.8 104 77.9
Nn3g21235 Nelumbo nucifera HOM05D004069 ORTHO05D004699 2.8e-44 181.8 103 77.7
ECA240G0933 Erigeron canadensis HOM05D004069 ORTHO05D004699 3.6e-44 181.4 104 76.0
MD13G1175600 Malus domestica HOM05D004069 ORTHO05D004699 3.6e-44 181.4 104 77.9
HPP92_001127 Vanilla planifolia HOM05D004069 ORTHO05D004699 3.6e-44 181.4 106 76.4
Actinidia40204 Actinidia chinensis HOM05D004069 ORTHO05D004699 4.7e-44 181.0 103 78.6
PGR031G1560 Punica granatum HOM05D004069 ORTHO05D004699 4.7e-44 181.0 105 79.0
Atru.chr4.2722 Acer truncatum HOM05D004069 ORTHO05D004699 6.2e-44 180.6 104 76.9
QL06p006731 Quercus lobata HOM05D004069 ORTHO05D004699 6.2e-44 180.6 104 76.9
TAR362G0867 Trochodendron aralioides HOM05D004069 ORTHO05D004699 6.2e-44 180.6 104 77.9
CDE09G1375 Ceratophyllum demersum HOM05D004069 ORTHO05D004699 8.1e-44 180.3 101 79.2
Carub.0003s0574 Capsella rubella HOM05D004069 ORTHO05D004699 1.1e-43 179.9 105 77.1
AUR62022250 Chenopodium quinoa HOM05D004069 ORTHO05D004699 1.1e-43 179.9 106 79.2
FAN07G2596 Fragaria x ananassa HOM05D004069 ORTHO05D004699 1.1e-43 179.9 104 77.9
FAN22G1255 Fragaria x ananassa HOM05D004069 ORTHO05D004699 1.1e-43 179.9 104 77.9
THA.LOC104818836 Tarenaya hassleriana HOM05D004069 ORTHO05D004699 1.1e-43 179.9 104 76.9
CiPaw.02G087900 Carya illinoinensis HOM05D004069 ORTHO05D004699 1.4e-43 179.5 104 76.9
Hund07638 Selenicereus undatus HOM05D004069 ORTHO05D004699 1.4e-43 179.5 104 76.9
PGR004G0388 Punica granatum HOM05D004069 ORTHO05D004699 1.8e-43 179.1 104 79.8
FvH4_4g16930 Fragaria vesca HOM05D004069 ORTHO05D004699 2.4e-43 178.7 104 76.9
FAN12G1790 Fragaria x ananassa HOM05D004069 ORTHO05D004699 2.4e-43 178.7 104 76.9
FAN12G4073 Fragaria x ananassa HOM05D004069 ORTHO05D004699 2.4e-43 178.7 104 76.9
vmacro15276 Vaccinium macrocarpon HOM05D004069 ORTHO05D004699 2.4e-43 178.7 96 81.2
EL10Ac9g21174 Beta vulgaris HOM05D004069 ORTHO05D004699 3.1e-43 178.3 106 77.4
Cpa.g.sc16.88 Carica papaya HOM05D004069 ORTHO05D004699 4.0e-43 177.9 104 76.9
Ah.01g005950 Amaranthus hybridus HOM05D004069 ORTHO05D004699 5.2e-43 177.6 106 78.3
MSTRG.9205 Avicennia marina HOM05D004069 ORTHO05D004699 5.2e-43 177.6 101 76.2
FAN17G0096 Fragaria x ananassa HOM05D004069 ORTHO05D004699 5.2e-43 177.6 104 76.9
Aqoxy5G00598 Aquilegia oxysepala HOM05D004069 ORTHO05D004699 6.8e-43 177.2 104 76.0
AL3G17240 Arabidopsis lyrata HOM05D004069 ORTHO05D004699 6.8e-43 177.2 105 76.2
AT3G06310 Arabidopsis thaliana HOM05D004069 ORTHO05D004699 6.8e-43 177.2 105 76.2
AL6G30150 Arabidopsis lyrata HOM05D004069 ORTHO05D004699 8.9e-43 176.8 104 76.9
AT5G18800 Arabidopsis thaliana HOM05D004069 ORTHO05D004699 8.9e-43 176.8 104 76.9
Carub.0006s1710 Capsella rubella HOM05D004069 ORTHO05D004699 8.9e-43 176.8 104 76.9
Hma1.2p1_0643F.1_g194630 Hydrangea macrophylla HOM05D004069 ORTHO05D004699 8.9e-43 176.8 108 76.9
BcaB01g05275 Brassica carinata HOM05D004069 ORTHO05D004699 1.2e-42 176.4 104 76.9
BcaC03g13618 Brassica carinata HOM05D004069 ORTHO05D004699 1.2e-42 176.4 104 76.9
A03p09140 Brassica napus HOM05D004069 ORTHO05D004699 1.2e-42 176.4 104 76.9
A10p20810 Brassica napus HOM05D004069 ORTHO05D004699 1.2e-42 176.4 104 76.9
C03p10670 Brassica napus HOM05D004069 ORTHO05D004699 1.2e-42 176.4 104 76.9
BolC2t06916H Brassica oleracea HOM05D004069 ORTHO05D004699 1.2e-42 176.4 104 76.9
BolC3t13543H Brassica oleracea HOM05D004069 ORTHO05D004699 1.2e-42 176.4 104 76.9
BraA03t10237Z Brassica rapa HOM05D004069 ORTHO05D004699 1.2e-42 176.4 104 76.9
BraA10t44146Z Brassica rapa HOM05D004069 ORTHO05D004699 1.2e-42 176.4 104 76.9
CARHR080830 Cardamine hirsuta HOM05D004069 ORTHO05D004699 1.2e-42 176.4 105 75.2
Thhalv10021810m.g Eutrema salsugineum HOM05D004069 ORTHO05D004699 1.2e-42 176.4 106 75.5
Sp3g05220 Schrenkiella parvula HOM05D004069 ORTHO05D004699 1.2e-42 176.4 106 74.5
unitig_37.g12295 Utricularia gibba HOM05D004069 ORTHO05D004699 1.2e-42 176.4 107 72.9
Actinidia00062 Actinidia chinensis HOM05D004069 ORTHO05D004699 1.5e-42 176.0 103 74.8
Eucgr.B01248 Eucalyptus grandis HOM05D004069 ORTHO05D004699 1.5e-42 176.0 105 75.2
MD16G1177400 Malus domestica HOM05D004069 ORTHO05D004699 1.5e-42 176.0 104 75.0
Os03g0295500 Oryza sativa ssp. japonica HOM05D004069 ORTHO05D004699 1.5e-42 176.0 105 74.3
Aqoxy2G03156 Aquilegia oxysepala HOM05D004069 ORTHO05D004699 2.0e-42 175.6 101 76.2
CARHR194200 Cardamine hirsuta HOM05D004069 ORTHO05D004699 2.6e-42 175.3 104 76.0
Sp6g25590 Schrenkiella parvula HOM05D004069 ORTHO05D004699 2.6e-42 175.3 104 76.0
BcaB01g04889 Brassica carinata HOM05D004069 ORTHO05D004699 3.4e-42 174.9 103 76.7
BcaB08g36643 Brassica carinata HOM05D004069 ORTHO05D004699 3.4e-42 174.9 104 76.0
Migut.F02022 Erythranthe guttata HOM05D004069 ORTHO05D004699 3.4e-42 174.9 104 72.1
Thhalv10015085m.g Eutrema salsugineum HOM05D004069 ORTHO05D004699 3.4e-42 174.9 104 76.0
Oeu007709.1 Olea europaea HOM05D004069 ORTHO05D004699 3.4e-42 174.9 103 74.8
C09p57690 Brassica napus HOM05D004069 ORTHO05D004699 4.4e-42 174.5 104 75.0
unitig_46.g18583 Utricularia gibba HOM05D004069 ORTHO05D004699 4.4e-42 174.5 105 74.3
Zm00001eb396890 Zea mays HOM05D004069 ORTHO05D004699 4.4e-42 174.5 105 74.3
Psat4g149640 Pisum sativum HOM05D004069 ORTHO05D004699 5.8e-42 174.1 105 75.2
VMungo0331G0279 Vigna mungo HOM05D004069 ORTHO05D004699 5.8e-42 174.1 104 75.0
BraA02t05469Z Brassica rapa HOM05D004069 ORTHO05D004699 7.6e-42 173.7 104 75.0
Eucgr.B01240 Eucalyptus grandis HOM05D004069 ORTHO05D004699 7.6e-42 173.7 105 74.3
Medtr8g035900 Medicago truncatula HOM05D004069 ORTHO05D004699 7.6e-42 173.7 104 76.0
PGR031G3162 Punica granatum HOM05D004069 ORTHO05D004699 7.6e-42 173.7 105 76.2
Rhsim02G0014600 Rhododendron simsii HOM05D004069 ORTHO05D004699 7.6e-42 173.7 106 73.6
TPR.G36608 Trifolium pratense HOM05D004069 ORTHO05D004699 7.6e-42 173.7 105 76.2
arahy.Tifrunner.gnm1.ann1.EYX6XU Arachis hypogaea HOM05D004069 ORTHO05D004699 1.3e-41 172.9 104 75.0
BcaC04g18646 Brassica carinata HOM05D004069 ORTHO05D004699 1.3e-41 172.9 104 74.0
BolC9t58640H Brassica oleracea HOM05D004069 ORTHO05D004699 1.3e-41 172.9 104 74.0
arahy.Tifrunner.gnm1.ann1.J8E67M Arachis hypogaea HOM05D004069 ORTHO05D004699 1.7e-41 172.6 104 75.0
Lj3g0025312 Lotus japonicus HOM05D004069 ORTHO05D004699 1.7e-41 172.6 104 75.0
Glyma.01G145000 Glycine max HOM05D004069 ORTHO05D004699 2.2e-41 172.2 104 74.0
Aa31LG11G10890 Aethionema arabicum HOM05D004069 ORTHO05D004699 2.9e-41 171.8 104 75.0
Ciclev10006197m.g Citrus clementina HOM05D004069 ORTHO05D004699 2.9e-41 171.8 104 72.1
VMungo0331G0995 Vigna mungo HOM05D004069 ORTHO05D004699 3.8e-41 171.4 104 74.0
Lalb_Chr07g0189611 Lupinus albus HOM05D004069 ORTHO05D004699 6.4e-41 170.6 102 74.5
PSO832G3814 Papaver somniferum HOM05D004069 ORTHO05D004699 8.4e-41 170.2 100 77.0
Glyma.03G021800 Glycine max HOM05D004069 ORTHO05D004699 1.1e-40 169.9 104 73.1
SEGI_25177 Sequoiadendron giganteum HOM05D004069 ORTHO05D004699 1.1e-40 169.9 106 70.8
Zm00001eb013640 Zea mays HOM05D004069 ORTHO05D004699 1.1e-40 169.9 111 71.2
PSO210G4490 Papaver somniferum HOM05D004069 ORTHO05D004699 1.4e-40 169.5 100 76.0
TAR633G1540 Trochodendron aralioides HOM05D004069 ORTHO05D004699 1.4e-40 169.5 87 85.1
A02p05100 Brassica napus HOM05D000415 ORTHO05D002707 2.4e-40 168.7 101 76.2
C02p10150 Brassica napus HOM05D000415 ORTHO05D002707 2.4e-40 168.7 101 76.2
Hund24899 Selenicereus undatus HOM05D004069 ORTHO05D004699 2.4e-40 168.7 104 75.0
Phvul.010G048500 Phaseolus vulgaris HOM05D004069 ORTHO05D004699 3.2e-40 168.3 104 72.1
Gohir.D10G164800 Gossypium hirsutum HOM05D004069 ORTHO05D004699 1.2e-39 166.4 104 70.2
Gorai.011G184000 Gossypium raimondii HOM05D004069 ORTHO05D004699 1.2e-39 166.4 104 70.2
HanXRQChr03g0080011 Helianthus annuus HOM05D004069 ORTHO05D004699 1.6e-39 166.0 87 82.8
Sc19g0004820 Simmondsia chinensis HOM05D004069 ORTHO05D004699 1.6e-39 166.0 103 70.9
THA.LOC104827125 Tarenaya hassleriana HOM05D004069 ORTHO05D004699 2.1e-39 165.6 104 74.0
Thecc.04G274500 Theobroma cacao HOM05D004069 ORTHO05D004699 4.6e-39 164.5 104 69.2
Lalb_Chr13g0291661 Lupinus albus HOM05D004069 ORTHO05D004699 6.0e-39 164.1 102 70.6
Gohir.A09G232800 Gossypium hirsutum HOM05D004069 ORTHO05D004699 1.0e-38 163.3 104 68.3
Gohir.A10G103600 Gossypium hirsutum HOM05D004069 ORTHO05D004699 1.0e-38 163.3 104 69.2
Duzib212G0467 Durio zibethinus HOM05D004069 ORTHO05D004699 1.3e-38 162.9 104 67.3
Gorai.006G256800 Gossypium raimondii HOM05D004069 ORTHO05D004699 3.0e-38 161.8 104 67.3
Rhsim04G0214300 Rhododendron simsii HOM05D004069 ORTHO05D004699 3.0e-38 161.8 168 51.2
Gohir.D09G233900 Gossypium hirsutum HOM05D004069 ORTHO05D004699 5.1e-38 161.0 104 67.3
Duzib151G0641 Durio zibethinus HOM05D004069 ORTHO05D004699 8.6e-38 160.2 104 66.3
Duzib052G0156 Durio zibethinus HOM05D004069 ORTHO05D004699 3.6e-36 154.8 104 63.5
Pp3c10_17050 Physcomitrium patens HOM05D004069 ORTHO05D004699 4.4e-34 147.9 107 65.4
Lsat_1_v5_gn_5_51221 Lactuca sativa HOM05D004069 ORTHO05D004699 2.4e-32 142.1 74 79.7
Mapoly0119s0025 Marchantia polymorpha HOM05D004069 ORTHO05D004699 9.3e-32 140.2 96 64.6
Pp3c3_33480 Physcomitrium patens HOM05D004069 ORTHO05D004699 9.3e-32 140.2 94 66.0
Haze_01035 Corylus avellana HOM05D004069 ORTHO05D004699 1.2e-31 139.8 81 79.0
Pp3c4_6220 Physcomitrium patens HOM05D004069 ORTHO05D004699 4.6e-31 137.9 107 61.7
CDE02G1037 Ceratophyllum demersum HOM05D003181 ORTHO05D003689 6.0e-31 137.5 78 79.5
CBR_g31386 Chara braunii HOM05D004069 ORTHO05D004699 7.8e-31 137.1 95 66.3
Dinv44442 Davidia involucrata HOM05D004069 ORTHO05D004699 8.7e-30 133.7 105 58.1
Dinv38340 Davidia involucrata HOM05D004069 ORTHO05D004699 4.3e-29 131.3 97 64.9
THA.LOC104802732 Tarenaya hassleriana HOM05D004069 ORTHO05D004699 5.6e-29 131.0 79 73.4
SMO146G0136 Selaginella moellendorffii HOM05D004069 ORTHO05D004699 1.8e-27 125.9 95 54.7
PGSC0003DMG400012496 Solanum tuberosum HOM05D004069 ORTHO05D004699 6.0e-23 110.9 71 73.2
CSS0016731 Camellia sinensis var. sinensis HOM05D004069 ORTHO05D004699 1.3e-22 109.8 72 69.4
ClCG03G006350 Citrullus lanatus HOM05D004069 ORTHO05D004699 3.0e-22 108.6 66 74.2
MELO3C035505.2 Cucumis melo HOM05D004069 ORTHO05D004699 4.3e-21 104.8 62 77.4
MCO10G196 Micromonas commoda HOM05D004069 ORTHO05D004699 1.3e-20 103.2 93 48.4
Oeu055049.1 Olea europaea HOM05D005940 ORTHO05D007027 6.2e-20 100.9 68 69.1
AUR62031965 Chenopodium quinoa HOM05D004069 ORTHO05D004699 6.9e-19 97.4 64 73.4
CANSAT54G1967 Cannabis sativa HOM05D004069 ORTHO05D004699 9.0e-19 97.1 59 76.3
Ca_23836_v3 Cicer arietinum L. HOM05D004069 ORTHO05D004699 9.0e-19 97.1 62 72.6
HanXRQChr05g0152631 Helianthus annuus HOM05D001685 ORTHO05D007488 9.9e-18 93.6 59 69.5
Solyc08g007805.1 Solanum lycopersicum HOM05D004069 ORTHO05D004699 1.7e-17 92.8 54 75.9
PRCOL_00002240 Prasinoderma coloniale HOM05D004069 ORTHO05D004699 1.9e-16 89.4 90 42.2
Ah.01g017190 Amaranthus hybridus HOM05D004069 ORTHO05D004699 2.4e-16 89.0 58 75.9
Lsat_1_v5_gn_5_162901 Lactuca sativa HOM05D004069 ORTHO05D004699 3.2e-16 88.6 62 64.5
SGA_v2.0_scaffold122G33247 Striga asiatica HOM05D002362 ORTHO05D002465 4.2e-16 88.2 54 72.2
Ah.01g017180 Amaranthus hybridus HOM05D004069 ORTHO05D004699 1.8e-14 82.8 53 62.3
MBI18_g15803_MAGBIO Magnolia biondii HOM05D004069 ORTHO05D004699 2.3e-14 82.4 45 75.6
VMungo0251G3681 Vigna mungo HOM05D039118 ORTHO05D004699 7.4e-13 77.4 45 75.6
VMungo0720G1128 Vigna mungo HOM05D004069 ORTHO05D004699 7.4e-13 77.4 64 59.4


User provided reference genes

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