Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc11g0003890 Simmondsia chinensis HOM05D006456 ORTHO05D007588 5.8e-147 524.2 273 100.0
CSS0027890 Camellia sinensis var. sinensis HOM05D006456 ORTHO05D007588 6.2e-56 221.9 278 47.8
TAR629G3159 Trochodendron aralioides HOM05D006456 ORTHO05D007588 8.1e-56 221.5 268 50.7
GSVIVG01011822001 Vitis vinifera HOM05D006456 ORTHO05D007588 8.1e-56 221.5 269 49.4
Prupe.1G318000 Prunus persica HOM05D006456 ORTHO05D007588 8.9e-55 218.0 264 50.4
Dinv31583 Davidia involucrata HOM05D006456 ORTHO05D007588 1.2e-54 217.6 268 49.3
Rhsim12G0086900 Rhododendron simsii HOM05D006456 ORTHO05D007588 2.6e-54 216.5 268 48.1
CiPaw.06G016000 Carya illinoinensis HOM05D006456 ORTHO05D007588 5.8e-54 215.3 262 48.9
vmacro01410 Vaccinium macrocarpon HOM05D006456 ORTHO05D007588 1.3e-53 214.2 268 47.8
Manes.06G064100 Manihot esculenta HOM05D006456 ORTHO05D007588 4.9e-53 212.2 269 49.8
CiPaw.05G243600 Carya illinoinensis HOM05D006456 ORTHO05D007588 6.4e-53 211.8 270 48.9
QL01p003354 Quercus lobata HOM05D006456 ORTHO05D007588 6.0e-51 205.3 271 47.6
TWI75G0343 Tripterygium wilfordii HOM05D006456 ORTHO05D007588 7.8e-51 204.9 269 48.3
Oeu027684.2 Olea europaea HOM05D006456 ORTHO05D007588 1.7e-50 203.8 271 46.9
CANSAT01G2803 Cannabis sativa HOM05D006456 ORTHO05D007588 2.3e-50 203.4 271 46.1
Hund25025 Selenicereus undatus HOM05D006456 ORTHO05D007588 3.9e-50 202.6 265 47.5
Duzib248G0017 Durio zibethinus HOM05D006456 ORTHO05D007588 6.6e-50 201.8 269 48.3
MD13G1034500 Malus domestica HOM05D006456 ORTHO05D007588 1.5e-49 200.7 262 47.3
Nn4g23975 Nelumbo nucifera HOM05D006456 ORTHO05D007588 1.5e-49 200.7 265 47.9
Thecc.02G220100 Theobroma cacao HOM05D006456 ORTHO05D007588 4.3e-49 199.1 266 47.4
Oeu014300.2 Olea europaea HOM05D006456 ORTHO05D007588 5.6e-49 198.7 271 46.5
Haze_00665 Corylus avellana HOM05D006456 ORTHO05D007588 1.6e-48 197.2 264 45.5
CAN.G99.9 Capsicum annuum HOM05D006456 ORTHO05D007588 2.1e-48 196.8 271 47.6
MD16G1036000 Malus domestica HOM05D006456 ORTHO05D007588 2.4e-47 193.4 261 48.7
Nitab4.5_0001999g0020 Nicotiana tabacum HOM05D006456 ORTHO05D007588 8.9e-47 191.4 271 45.8
Solyc03g013030.3 Solanum lycopersicum HOM05D006456 ORTHO05D007588 3.4e-46 189.5 274 44.9
MSTRG.2210 Avicennia marina HOM05D006456 ORTHO05D007588 4.4e-46 189.1 271 42.4
Gohir.D05G316500 Gossypium hirsutum HOM05D006456 ORTHO05D007588 7.6e-46 188.3 276 46.4
Gorai.009G338700 Gossypium raimondii HOM05D006456 ORTHO05D007588 7.6e-46 188.3 276 46.4
Sopen03g020360 Solanum pennellii HOM05D006456 ORTHO05D007588 9.9e-46 188.0 274 46.0
Aqoxy3G00186 Aquilegia oxysepala HOM05D006456 ORTHO05D007588 1.7e-45 187.2 275 44.4
Gohir.A05G315000 Gossypium hirsutum HOM05D006456 ORTHO05D007588 2.9e-45 186.4 276 45.7
PGSC0003DMG400010378 Solanum tuberosum HOM05D006456 ORTHO05D007588 1.4e-44 184.1 180 57.8
Cc11_g09550 Coffea canephora HOM05D006456 ORTHO05D007588 4.2e-44 182.6 278 43.5
PSO017G1436 Papaver somniferum HOM05D006456 ORTHO05D007588 4.2e-44 182.6 267 44.2
Atru.chr11.273 Acer truncatum HOM05D006456 ORTHO05D007588 1.6e-43 180.6 273 44.7
DCAR_007270 Daucus carota HOM05D006456 ORTHO05D007588 3.5e-43 179.5 265 44.2
PSO478G4574 Papaver somniferum HOM05D006456 ORTHO05D007588 7.8e-43 178.3 267 44.2
Peaxi162Scf00520g00114 Petunia axillaris HOM05D006456 ORTHO05D007588 1.7e-42 177.2 176 57.4
PGR119G2311 Punica granatum HOM05D006456 ORTHO05D007588 2.3e-42 176.8 265 42.6
ClCG05G022400 Citrullus lanatus HOM05D006456 ORTHO05D007588 3.0e-42 176.4 274 44.5
CsaV3_5G034690 Cucumis sativus L. HOM05D006456 ORTHO05D007588 1.1e-41 174.5 277 43.3
ECA246G1061 Erigeron canadensis HOM05D006456 ORTHO05D007588 2.5e-41 173.3 170 57.1
C06p37830 Brassica napus HOM05D006456 ORTHO05D007588 3.3e-41 172.9 267 41.6
MELO3C012283.2 Cucumis melo HOM05D006456 ORTHO05D007588 4.3e-41 172.6 280 45.4
FvH4_4g26560 Fragaria vesca HOM05D006456 ORTHO05D007588 9.6e-41 171.4 266 42.1
FAN17G0635 Fragaria x ananassa HOM05D006456 ORTHO05D007588 9.6e-41 171.4 266 42.5
FAN12G2031 Fragaria x ananassa HOM05D006456 ORTHO05D007588 1.3e-40 171.0 274 42.7
FAN12G0878 Fragaria x ananassa HOM05D006456 ORTHO05D007588 1.6e-40 170.6 274 42.7
Glyma.10G269500 Glycine max HOM05D006456 ORTHO05D007588 1.6e-40 170.6 267 40.8
Phvul.007G033000 Phaseolus vulgaris HOM05D006456 ORTHO05D007588 2.1e-40 170.2 266 41.4
FAN22G1705 Fragaria x ananassa HOM05D006456 ORTHO05D007588 3.6e-40 169.5 266 42.9
ATR0053G055 Amborella trichopoda HOM05D006456 ORTHO05D007588 4.8e-40 169.1 266 39.8
AT1G68185 Arabidopsis thaliana HOM05D006456 ORTHO05D007588 4.8e-40 169.1 268 41.4
AUR62002792 Chenopodium quinoa HOM05D006456 ORTHO05D007588 6.2e-40 168.7 269 43.5
BcaC08g45988 Brassica carinata HOM05D006456 ORTHO05D007588 1.1e-39 167.9 269 40.5
Lj5g0005162 Lotus japonicus HOM05D006456 ORTHO05D007588 1.1e-39 167.9 266 40.2
Sed0027511 Sechium edule HOM05D006456 ORTHO05D007588 1.1e-39 167.9 273 43.2
Glyma.20G121600 Glycine max HOM05D006456 ORTHO05D007588 1.4e-39 167.5 271 40.6
Carub.0002s1467 Capsella rubella HOM05D006456 ORTHO05D007588 1.8e-39 167.2 268 42.2
FAN07G1047 Fragaria x ananassa HOM05D006456 ORTHO05D008764 1.8e-39 167.2 274 42.0
Atru.chr11.288 Acer truncatum HOM05D006456 ORTHO05D007588 2.4e-39 166.8 179 54.2
Aa31sc140G50 Aethionema arabicum HOM05D006456 ORTHO05D007588 5.3e-39 165.6 270 40.4
Ciclev10016584m.g Citrus clementina HOM05D006456 ORTHO05D007588 6.9e-39 165.2 270 40.7
HanXRQChr15g0477811 Helianthus annuus HOM05D006456 ORTHO05D007588 9.0e-39 164.9 267 40.8
Thhalv10019127m.g Eutrema salsugineum HOM05D006456 ORTHO05D007588 2.6e-38 163.3 265 40.0
Lalb_Chr10g0096361 Lupinus albus HOM05D006456 ORTHO05D007588 3.4e-38 162.9 267 41.2
BcaB03g15404 Brassica carinata HOM05D006456 ORTHO05D007588 4.4e-38 162.5 261 39.8
HanXRQChr17g0556631 Helianthus annuus HOM05D006456 ORTHO05D007588 4.4e-38 162.5 268 41.0
SGA_v2.0_scaffold170G38812 Striga asiatica HOM05D006456 ORTHO05D007588 9.9e-38 161.4 286 38.5
AUR62014103 Chenopodium quinoa HOM05D006456 ORTHO05D007588 2.2e-37 160.2 269 42.0
CDE07G1334 Ceratophyllum demersum HOM05D006456 ORTHO05D007588 2.9e-37 159.8 266 40.6
Lalb_Chr17g0338791 Lupinus albus HOM05D006456 ORTHO05D007588 4.9e-37 159.1 267 37.5
A07p32110 Brassica napus HOM05D006456 ORTHO05D007588 6.4e-37 158.7 264 40.2
unitig_52.g17127 Utricularia gibba HOM05D006456 ORTHO05D007588 6.4e-37 158.7 271 39.5
arahy.Tifrunner.gnm1.ann1.UW2YW6 Arachis hypogaea HOM05D006456 ORTHO05D007588 8.4e-37 158.3 263 39.9
Lsat_1_v5_gn_3_56960 Lactuca sativa HOM05D006456 ORTHO05D007588 1.4e-36 157.5 269 40.5
AL2G27020 Arabidopsis lyrata HOM05D006456 ORTHO05D007588 2.4e-36 156.8 265 39.2
CARHR060870 Cardamine hirsuta HOM05D006456 ORTHO05D007588 3.2e-36 156.4 264 39.4
Medtr1g109370 Medicago truncatula HOM05D006456 ORTHO05D007588 4.2e-36 156.0 265 39.6
MBI16_g14292_MAGBIO Magnolia biondii HOM05D006456 ORTHO05D007588 5.4e-36 155.6 269 40.5
THA.LOC104801669 Tarenaya hassleriana HOM05D006456 ORTHO05D007588 5.4e-36 155.6 270 39.6
Ah.02g128170 Amaranthus hybridus HOM05D006456 ORTHO05D007588 1.2e-35 154.5 271 39.5
Sed0026587 Sechium edule HOM05D006456 ORTHO05D007588 1.3e-34 151.0 166 53.6
Sp5g23190 Schrenkiella parvula HOM05D006456 ORTHO05D007588 1.7e-34 150.6 282 37.2
Potri.010G118900 Populus trichocarpa HOM05D006456 ORTHO05D007588 2.3e-34 150.2 271 39.1
Lj6P752T19 Lonicera japonica HOM05D006456 ORTHO05D007588 3.9e-34 149.4 127 62.2
Ca_11124_v3 Cicer arietinum L. HOM05D006456 ORTHO05D007588 9.6e-33 144.8 268 38.4
Cpa.g.sc65.75 Carica papaya HOM05D006456 ORTHO05D007588 1.6e-32 144.1 179 49.2
Eucgr.G02230 Eucalyptus grandis HOM05D006456 ORTHO05D007588 2.8e-32 143.3 132 56.8
EL10Ac6g14282 Beta vulgaris HOM05D006456 ORTHO05D007588 4.8e-32 142.5 146 52.7
TPR.G4830 Trifolium pratense HOM05D006456 ORTHO05D007588 4.8e-32 142.5 186 43.5
Migut.E00381 Erythranthe guttata HOM05D006456 ORTHO05D007588 1.1e-31 141.4 129 56.6
RcHm_v2.0_Chr4g0434211 Rosa chinensis HOM05D006456 ORTHO05D007588 2.4e-31 140.2 134 56.7
Psat6g223800 Pisum sativum HOM05D006456 ORTHO05D007588 3.1e-31 139.8 180 44.4
CsaV3_5G006740 Cucumis sativus L. HOM05D006456 ORTHO05D007588 5.4e-28 129.0 288 35.8
VMungo0720G1166 Vigna mungo HOM05D006456 ORTHO05D007588 5.4e-28 129.0 130 52.3
HanXRQChr17g0556611 Helianthus annuus HOM05D006456 ORTHO05D007588 7.1e-28 128.6 140 50.7
arahy.Tifrunner.gnm1.ann1.WCM1NC Arachis hypogaea HOM05D006456 ORTHO05D007588 2.7e-27 126.7 268 36.6
Os01g0607300 Oryza sativa ssp. japonica HOM05D006456 ORTHO05D007588 2.7e-27 126.7 270 35.2
HPP92_004876 Vanilla planifolia HOM05D006456 ORTHO05D007588 8.7e-26 121.7 276 34.1
HPP92_004850 Vanilla planifolia HOM05D006456 ORTHO05D007588 1.1e-25 121.3 276 34.1
BolC6t38884H Brassica oleracea HOM05D006456 ORTHO05D007588 1.5e-25 120.9 123 52.8
Zm00001eb357890 Zea mays HOM05D006456 ORTHO05D007588 9.6e-25 118.2 140 48.6
BraA07t30839Z Brassica rapa HOM05D006456 ORTHO05D007588 1.1e-23 114.8 118 53.4
Nitab4.5_0012897g0010 Nicotiana tabacum HOM05D006456 ORTHO05D007588 1.2e-22 111.3 215 40.0
Sabra10G0089400 Salix brachista HOM05D006456 ORTHO05D007588 2.0e-22 110.5 121 50.4
COL.COLO4_36793 Corchorus olitorius HOM05D006456 ORTHO05D007588 8.2e-16 88.6 53 77.4
Mapoly0066s0083 Marchantia polymorpha HOM05D006456 ORTHO05D007588 2.0e-14 84.0 159 38.4
Pp3c14_19600 Physcomitrium patens HOM05D006456 ORTHO05D007588 2.5e-12 77.0 173 32.9
Pp3c2_12120 Physcomitrium patens HOM05D006456 ORTHO05D007588 3.2e-12 76.6 170 31.8
SEGI_26799 Sequoiadendron giganteum HOM05D006456 ORTHO05D007588 5.7e-09 65.9 99 41.4
CDE06G0604 Ceratophyllum demersum HOM05D006456 ORTHO05D007588 7.4e-09 65.5 166 36.7
Thhalv10015519m.g Eutrema salsugineum HOM05D000984 ORTHO05D001096 1.3e-08 64.7 79 41.8
SHI16259 Sapria himalayana HOM05D006456 ORTHO05D007588 2.8e-08 63.5 49 65.3
CBR_g17172 Chara braunii HOM05D006456 ORTHO05D007588 6.3e-08 62.4 112 36.6
Solyc07g049360.3 Solanum lycopersicum HOM05D000984 ORTHO05D001096 6.3e-08 62.4 85 36.5
Sopen07g024700 Solanum pennellii HOM05D000984 ORTHO05D001096 6.3e-08 62.4 85 36.5
Actinidia31998 Actinidia chinensis HOM05D006456 ORTHO05D007588 8.2e-08 62.0 82 42.7
PGSC0003DMG400000665 Solanum tuberosum HOM05D000984 ORTHO05D001096 2.4e-07 60.5 85 34.1
Cc05_g02960 Coffea canephora HOM05D000984 ORTHO05D001096 4.1e-07 59.7 86 37.2
FvH4_2g18770 Fragaria vesca HOM05D000984 ORTHO05D001096 6.9e-07 58.9 82 36.6
FAN15G0792 Fragaria x ananassa HOM05D000984 ORTHO05D001096 6.9e-07 58.9 82 36.6
FAN24G1775 Fragaria x ananassa HOM05D000984 ORTHO05D001096 6.9e-07 58.9 82 36.6
FAN27G3469 Fragaria x ananassa HOM05D000984 ORTHO05D001096 6.9e-07 58.9 82 36.6
RcHm_v2.0_Chr6g0284511 Rosa chinensis HOM05D000984 ORTHO05D001096 6.9e-07 58.9 82 36.6
CAN.G1493.2 Capsicum annuum HOM05D000984 ORTHO05D001096 2.0e-06 57.4 86 36.0
Dinv39748 Davidia involucrata HOM05D000984 ORTHO05D001096 2.0e-06 57.4 84 34.5
THA.LOC104818963 Tarenaya hassleriana HOM05D000984 ORTHO05D001096 2.0e-06 57.4 82 35.4
THA.LOC104818964 Tarenaya hassleriana HOM05D000984 ORTHO05D001096 2.0e-06 57.4 82 35.4
Dinv08721 Davidia involucrata HOM05D000984 ORTHO05D001096 3.4e-06 56.6 84 34.5
DCAR_030021 Daucus carota HOM05D000984 ORTHO05D007588 4.5e-06 56.2 96 30.2
DCAR_030977 Daucus carota HOM05D000984 ORTHO05D007588 4.5e-06 56.2 105 26.7
Lalb_Chr10g0105621 Lupinus albus HOM05D000984 ORTHO05D001096 4.5e-06 56.2 81 35.8
Carub.0008s1621 Capsella rubella HOM05D000984 ORTHO05D001096 5.9e-06 55.8 88 37.5
Hma1.2p1_0445F.1_g154350 Hydrangea macrophylla HOM05D000984 ORTHO05D001096 5.9e-06 55.8 84 33.3
Peaxi162Scf00921g00247 Petunia axillaris HOM05D000984 ORTHO05D001096 5.9e-06 55.8 83 37.3
MELO3C014183.2 Cucumis melo HOM05D000984 ORTHO05D001096 7.7e-06 55.5 80 35.0
CsaV3_3G004860 Cucumis sativus L. HOM05D000984 ORTHO05D001096 7.7e-06 55.5 80 35.0
Sc06g0009650 Simmondsia chinensis HOM05D000984 ORTHO05D001096 7.7e-06 55.5 84 36.9
vmacro09359 Vaccinium macrocarpon HOM05D000984 ORTHO05D001096 7.7e-06 55.5 84 34.5
CARHR269230 Cardamine hirsuta HOM05D000984 ORTHO05D001096 1.0e-05 55.1 85 36.5
Cfa013584 Carpinus fangiana HOM05D000984 ORTHO05D001096 1.0e-05 55.1 80 33.8
MD05G1173700 Malus domestica HOM05D000984 ORTHO05D001096 1.0e-05 55.1 91 34.1


User provided reference genes

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