Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc11g0003880 Simmondsia chinensis HOM05D000196 ORTHO05D015722 1.2e-49 199.5 100 100.0
Dinv16150 Davidia involucrata HOM05D000196 ORTHO05D000279 3.2e-18 95.1 85 60.0
CAN.G661.3 Capsicum annuum HOM05D000196 ORTHO05D000279 8.7e-16 87.0 84 51.2
SalBow8G0367 Salvia bowleyana HOM05D000196 ORTHO05D000279 3.7e-14 81.6 91 45.1
Rhsim12G0086600 Rhododendron simsii HOM05D000196 ORTHO05D000279 2.4e-13 79.0 90 46.7
Actinidia16023 Actinidia chinensis HOM05D000196 ORTHO05D000279 3.8e-11 71.6 84 47.6
Migut.L01006 Erythranthe guttata HOM05D000196 ORTHO05D000279 3.8e-11 71.6 86 45.3
vmacro01408 Vaccinium macrocarpon HOM05D000196 ORTHO05D000279 8.4e-11 70.5 85 43.5
Prupe.1G317900 Prunus persica HOM05D000196 ORTHO05D015043 1.4e-10 69.7 84 42.9
SGA_v2.0_scaffold36G14567 Striga asiatica HOM05D000196 ORTHO05D000279 1.4e-10 69.7 76 46.1
Nitab4.5_0011481g0020 Nicotiana tabacum HOM05D000196 ORTHO05D015722 1.9e-10 69.3 84 44.0
Duzib248G1184 Durio zibethinus HOM05D000196 ORTHO05D000279 3.2e-10 68.6 84 42.9
Nitab4.5_0014239g0020 Nicotiana tabacum HOM05D000196 ORTHO05D015722 5.5e-10 67.8 84 44.0
Peaxi162Scf00205g00139 Petunia axillaris HOM05D000196 ORTHO05D015722 5.5e-10 67.8 80 42.5
Nitab4.5_0003715g0030 Nicotiana tabacum HOM05D000196 ORTHO05D015722 7.1e-10 67.4 84 44.0
ClCG01G005950 Citrullus lanatus HOM05D000196 ORTHO05D000279 9.3e-10 67.0 79 40.5
Cfa015826 Carpinus fangiana HOM05D000196 ORTHO05D015043 1.6e-09 66.2 86 38.4
MD16G1036100 Malus domestica HOM05D000196 ORTHO05D015043 2.1e-09 65.9 84 41.7
Haze_00664 Corylus avellana HOM05D000196 ORTHO05D000279 2.7e-09 65.5 86 38.4
Manes.06G064200 Manihot esculenta HOM05D000196 ORTHO05D000279 2.7e-09 65.5 92 34.8
TWI31G1263 Tripterygium wilfordii HOM05D000196 ORTHO05D000279 2.7e-09 65.5 82 43.9
PGSC0003DMG400035052 Solanum tuberosum HOM05D022087 ORTHO05D015722 1.8e-08 62.8 84 42.9
Thecc.02G220000 Theobroma cacao HOM05D000196 ORTHO05D013060 2.3e-08 62.4 84 35.7
MELO3C005336.2 Cucumis melo HOM05D000196 ORTHO05D020475 3.0e-08 62.0 84 38.1
PGSC0003DMG400038640 Solanum tuberosum HOM05D000196 ORTHO05D015722 3.0e-08 62.0 92 41.3
Dinv17522 Davidia involucrata HOM05D000196 ORTHO05D010161 6.7e-08 60.8 85 35.3
FAN17G0292 Fragaria x ananassa HOM05D000196 ORTHO05D015043 3.3e-07 58.5 86 38.4
FAN22G0213 Fragaria x ananassa HOM05D000196 ORTHO05D015043 4.3e-07 58.2 86 37.2
AT2G01760 Arabidopsis thaliana HOM05D000196 ORTHO05D000279 5.7e-07 57.8 78 35.9
PSO384G5002 Papaver somniferum HOM05D000196 ORTHO05D000279 5.7e-07 57.8 94 34.0
PSO676G0012 Papaver somniferum HOM05D000196 ORTHO05D000279 5.7e-07 57.8 94 34.0
FvH4_4g26570 Fragaria vesca HOM05D000196 ORTHO05D015043 7.4e-07 57.4 86 37.2
FAN12G2710 Fragaria x ananassa HOM05D000196 ORTHO05D015043 7.4e-07 57.4 86 37.2
FAN12G3607 Fragaria x ananassa HOM05D000196 ORTHO05D015043 7.4e-07 57.4 86 37.2
Atru.chr7.2521 Acer truncatum HOM05D000196 ORTHO05D000279 9.6e-07 57.0 81 34.6
PGSC0003DMG400047272 Solanum tuberosum HOM05D000196 ORTHO05D015722 9.6e-07 57.0 74 37.8
CSS0013426 Camellia sinensis var. sinensis HOM05D000196 ORTHO05D000279 1.3e-06 56.6 99 34.3
CSS0039789 Camellia sinensis var. sinensis HOM05D000196 ORTHO05D000279 1.3e-06 56.6 99 34.3
Cpa.g.sc39.35 Carica papaya HOM05D011099 ORTHO05D013060 1.3e-06 56.6 75 37.3
Sed0005457 Sechium edule HOM05D000196 ORTHO05D000279 1.6e-06 56.2 81 38.3
AL5G10890 Arabidopsis lyrata HOM05D000196 ORTHO05D000279 2.1e-06 55.8 78 34.6
TAR371G0147 Trochodendron aralioides HOM05D000196 ORTHO05D000279 2.1e-06 55.8 82 37.8
ClCG08G017460 Citrullus lanatus HOM05D000196 ORTHO05D000279 2.8e-06 55.5 82 39.0
Haze_04990 Corylus avellana HOM05D000196 ORTHO05D000279 2.8e-06 55.5 101 30.7
MELO3C010714.2 Cucumis melo HOM05D000196 ORTHO05D000279 2.8e-06 55.5 82 39.0
DCAR_018916 Daucus carota HOM05D000196 ORTHO05D000279 2.8e-06 55.5 83 34.9
Ciclev10031052m.g Citrus clementina HOM05D000196 ORTHO05D000279 3.7e-06 55.1 78 39.7
CsaV3_2G025170 Cucumis sativus L. HOM05D000196 ORTHO05D000279 3.7e-06 55.1 81 39.5
Lj2g0001554 Lotus japonicus HOM05D000196 ORTHO05D000279 3.7e-06 55.1 88 31.8
Nitab4.5_0002803g0020 Nicotiana tabacum HOM05D000196 ORTHO05D000279 3.7e-06 55.1 94 33.0
Rhsim02G0005800 Rhododendron simsii HOM05D000196 ORTHO05D000279 3.7e-06 55.1 101 31.7
ATR0824G208 Amborella trichopoda HOM05D000196 ORTHO05D000279 4.8e-06 54.7 78 38.5
BcaC08g46188 Brassica carinata HOM05D000196 ORTHO05D000279 4.8e-06 54.7 79 39.2
CiPaw.05G175000 Carya illinoinensis HOM05D000196 ORTHO05D000279 4.8e-06 54.7 82 39.0
COL.COLO4_23562 Corchorus olitorius HOM05D000196 ORTHO05D000279 4.8e-06 54.7 82 37.8
Dinv07718 Davidia involucrata HOM05D000196 ORTHO05D000279 4.8e-06 54.7 81 37.0
FAN07G0195 Fragaria x ananassa HOM05D000196 ORTHO05D015043 4.8e-06 54.7 84 36.9
Rhsim12G0107500 Rhododendron simsii HOM05D000196 ORTHO05D000279 4.8e-06 54.7 82 37.8
BcaB07g30375 Brassica carinata HOM05D000196 ORTHO05D000279 6.2e-06 54.3 92 31.5
BcaC09g51984 Brassica carinata HOM05D000196 ORTHO05D000279 6.2e-06 54.3 91 28.6
Cpa.g.sc86.17 Carica papaya HOM05D000196 ORTHO05D000279 6.2e-06 54.3 82 39.0
Ciclev10014527m.g Citrus clementina HOM05D000196 ORTHO05D000279 6.2e-06 54.3 95 34.7
PSO017G0209 Papaver somniferum HOM05D000196 ORTHO05D000279 6.2e-06 54.3 82 39.0
PSO478G3674 Papaver somniferum HOM05D000196 ORTHO05D000279 6.2e-06 54.3 82 39.0
QL03p036146 Quercus lobata HOM05D000196 ORTHO05D000279 6.2e-06 54.3 94 31.9
RcHm_v2.0_Chr4g0431941 Rosa chinensis HOM05D000196 ORTHO05D000279 6.2e-06 54.3 82 37.8
Hund06054 Selenicereus undatus HOM05D000196 ORTHO05D000279 6.2e-06 54.3 81 37.0
AT4G31920 Arabidopsis thaliana HOM05D000196 ORTHO05D000279 8.2e-06 53.9 91 27.5
C01p06970 Brassica napus HOM05D000196 ORTHO05D000279 8.2e-06 53.9 82 29.3
FAN07G0840 Fragaria x ananassa HOM05D000196 ORTHO05D000279 8.2e-06 53.9 82 37.8
Gohir.A03G130500 Gossypium hirsutum HOM05D000196 ORTHO05D000279 8.2e-06 53.9 82 37.8
Gorai.011G196400 Gossypium raimondii HOM05D000196 ORTHO05D000279 8.2e-06 53.9 97 35.1
Lj2g0013191 Lotus japonicus HOM05D000196 ORTHO05D000279 8.2e-06 53.9 88 31.8
Lj2g0025525 Lotus japonicus HOM05D000196 ORTHO05D000279 8.2e-06 53.9 88 31.8
Sc04g0009850 Simmondsia chinensis HOM05D000196 ORTHO05D000279 8.2e-06 53.9 89 36.0
THA.LOC104809797 Tarenaya hassleriana HOM05D000196 ORTHO05D000279 8.2e-06 53.9 79 39.2
THA.LOC104821316 Tarenaya hassleriana HOM05D000196 ORTHO05D000279 8.2e-06 53.9 79 39.2
Thecc.02G270100 Theobroma cacao HOM05D000196 ORTHO05D000279 8.2e-06 53.9 82 37.8


User provided reference genes

Program Settings