Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc11g0003830 Simmondsia chinensis HOM05D006532 ORTHO05D387458 2.3e-73 279.3 190 100.0
Sc23g0005260 Simmondsia chinensis HOM05D006532 ORTHO05D008570 1.6e-10 70.5 52 67.3
Eucgr.C00591 Eucalyptus grandis HOM05D006532 ORTHO05D008570 2.1e-10 70.1 52 65.4
Nn8g39129 Nelumbo nucifera HOM05D006532 ORTHO05D008570 6.1e-10 68.6 52 65.4
Cpa.g.c24654.2 Carica papaya HOM05D006532 ORTHO05D008570 1.0e-09 67.8 52 63.5
MBI04_g45213_MAGBIO Magnolia biondii HOM05D006532 ORTHO05D008570 5.1e-09 65.5 52 59.6
AUR62009283 Chenopodium quinoa HOM05D006532 ORTHO05D008570 6.7e-09 65.1 52 59.6
Hund03396 Selenicereus undatus HOM05D006532 ORTHO05D008570 6.7e-09 65.1 52 59.6
VMungo1309G2674 Vigna mungo HOM05D006532 ORTHO05D008570 6.7e-09 65.1 52 61.5
Dinv27901 Davidia involucrata HOM05D006532 ORTHO05D008570 8.8e-09 64.7 52 59.6
EL10Ac2g04018 Beta vulgaris HOM05D006532 ORTHO05D008570 1.1e-08 64.3 52 59.6
CDE02G1820 Ceratophyllum demersum HOM05D006532 ORTHO05D008570 1.5e-08 63.9 52 59.6
AUR62039700 Chenopodium quinoa HOM05D006532 ORTHO05D008570 1.5e-08 63.9 52 57.7
vmacro11058 Vaccinium macrocarpon HOM05D006532 ORTHO05D008570 1.5e-08 63.9 52 55.8
Actinidia13336 Actinidia chinensis HOM05D006532 ORTHO05D008570 2.0e-08 63.5 52 55.8
QL12p041387 Quercus lobata HOM05D006532 ORTHO05D008570 2.0e-08 63.5 52 61.5
Phvul.009G109800 Phaseolus vulgaris HOM05D006532 ORTHO05D008570 2.6e-08 63.2 52 59.6
TAR383G0022 Trochodendron aralioides HOM05D006532 ORTHO05D008570 2.6e-08 63.2 52 59.6
Hma1.2p1_1138F.1_g260800 Hydrangea macrophylla HOM05D006532 ORTHO05D008570 3.3e-08 62.8 52 57.7
Medtr3g109620 Medicago truncatula HOM05D006532 ORTHO05D008570 3.3e-08 62.8 52 59.6
Aqoxy7G03906 Aquilegia oxysepala HOM05D006532 ORTHO05D008570 4.4e-08 62.4 52 59.6
CANSAT25G2817 Cannabis sativa HOM05D006532 ORTHO05D008570 4.4e-08 62.4 53 60.4
ECA233G4786 Erigeron canadensis HOM05D006532 ORTHO05D008570 4.4e-08 62.4 52 57.7
Ah.10g035030 Amaranthus hybridus HOM05D006532 ORTHO05D008570 5.7e-08 62.0 52 59.6
ClCG08G012230 Citrullus lanatus HOM05D006532 ORTHO05D008570 5.7e-08 62.0 55 56.4
Lalb_Chr08g0243051 Lupinus albus HOM05D006532 ORTHO05D008570 5.7e-08 62.0 52 57.7
PGR031G1209 Punica granatum HOM05D006532 ORTHO05D008570 5.7e-08 62.0 52 59.6
CiPaw.07G204300 Carya illinoinensis HOM05D006532 ORTHO05D008570 7.4e-08 61.6 52 57.7
Rhsim02G0178300 Rhododendron simsii HOM05D006532 ORTHO05D008570 7.4e-08 61.6 52 55.8
arahy.Tifrunner.gnm1.ann1.WYW67Z Arachis hypogaea HOM05D006532 ORTHO05D008570 9.7e-08 61.2 52 55.8
DCAR_004469 Daucus carota HOM05D006532 ORTHO05D008570 9.7e-08 61.2 52 55.8
Hund19514 Selenicereus undatus HOM05D006532 ORTHO05D008570 9.7e-08 61.2 52 55.8
Sp4g05660 Schrenkiella parvula HOM05D006532 ORTHO05D008570 1.3e-07 60.8 52 53.8
ATR0705G133 Amborella trichopoda HOM05D006532 ORTHO05D008570 1.7e-07 60.5 52 59.6
CSS0019039 Camellia sinensis var. sinensis HOM05D006532 ORTHO05D008570 1.7e-07 60.5 52 55.8
GSVIVG01035625001 Vitis vinifera HOM05D006532 ORTHO05D008570 1.7e-07 60.5 52 59.6
Aa31LG5G9920 Aethionema arabicum HOM05D006532 ORTHO05D008570 2.2e-07 60.1 52 53.8
Migut.A00204 Erythranthe guttata HOM05D006532 ORTHO05D008570 2.2e-07 60.1 52 57.7
Lj8A581T27 Lonicera japonica HOM05D006532 ORTHO05D008570 2.2e-07 60.1 53 52.8
Peaxi162Scf00227g00717 Petunia axillaris HOM05D006532 ORTHO05D008570 2.2e-07 60.1 52 51.9
Sed0025155 Sechium edule HOM05D006532 ORTHO05D008570 2.2e-07 60.1 55 52.7
AL4G17550 Arabidopsis lyrata HOM05D006532 ORTHO05D008570 2.8e-07 59.7 52 53.8
FvH4_2g35600 Fragaria vesca HOM05D006532 ORTHO05D008570 2.8e-07 59.7 52 57.7
FAN15G2034 Fragaria x ananassa HOM05D006532 ORTHO05D008570 2.8e-07 59.7 52 57.7
FAN20G1106 Fragaria x ananassa HOM05D006532 ORTHO05D008570 2.8e-07 59.7 52 57.7
Gohir.A05G046832 Gossypium hirsutum HOM05D006532 ORTHO05D008570 2.8e-07 59.7 52 55.8
Gohir.D05G048600 Gossypium hirsutum HOM05D006532 ORTHO05D008570 2.8e-07 59.7 52 55.8
Gorai.009G049900 Gossypium raimondii HOM05D006532 ORTHO05D008570 2.8e-07 59.7 52 55.8
RcHm_v2.0_Chr6g0306211 Rosa chinensis HOM05D006532 ORTHO05D008570 2.8e-07 59.7 52 57.7
Sabra06G0186500 Salix brachista HOM05D006532 ORTHO05D008570 2.8e-07 59.7 52 55.8
AT2G25830 Arabidopsis thaliana HOM05D006532 ORTHO05D008570 3.7e-07 59.3 52 53.8
Ca_15592_v3 Cicer arietinum L. HOM05D006532 ORTHO05D008570 3.7e-07 59.3 52 57.7
Thhalv10002038m.g Eutrema salsugineum HOM05D006532 ORTHO05D008570 3.7e-07 59.3 52 51.9
FAN27G1267 Fragaria x ananassa HOM05D006532 ORTHO05D008570 3.7e-07 59.3 52 57.7
TPR.G15104 Trifolium pratense HOM05D006532 ORTHO05D008570 3.7e-07 59.3 52 57.7
CsaV3_2G030860 Cucumis sativus L. HOM05D006532 ORTHO05D008570 4.8e-07 58.9 55 52.7
Potri.006G238400 Populus trichocarpa HOM05D006532 ORTHO05D008570 4.8e-07 58.9 52 53.8
Thecc.09G045200 Theobroma cacao HOM05D006532 ORTHO05D008570 4.8e-07 58.9 52 55.8
A04p20040 Brassica napus HOM05D006532 ORTHO05D008570 6.3e-07 58.5 52 51.9
C04p55710 Brassica napus HOM05D006532 ORTHO05D008570 6.3e-07 58.5 52 51.9
BolC4t27098H Brassica oleracea HOM05D006532 ORTHO05D008570 6.3e-07 58.5 52 51.9
Carub.0004s0565 Capsella rubella HOM05D006532 ORTHO05D008570 6.3e-07 58.5 52 53.8
COL.COLO4_20970 Corchorus olitorius HOM05D006532 ORTHO05D008570 6.3e-07 58.5 52 55.8
Atru.chr7.2089 Acer truncatum HOM05D006532 ORTHO05D008570 8.2e-07 58.2 52 55.8
Lj1g0025870 Lotus japonicus HOM05D006532 ORTHO05D008570 8.2e-07 58.2 52 55.8
Solyc08g066640.3 Solanum lycopersicum HOM05D006532 ORTHO05D008570 8.2e-07 58.2 52 50.0
Cfa013365 Carpinus fangiana HOM05D006532 ORTHO05D008570 1.1e-06 57.8 52 55.8
Oeu038806.1 Olea europaea HOM05D006532 ORTHO05D008570 1.1e-06 57.8 52 51.9
Prupe.1G448300 Prunus persica HOM05D006532 ORTHO05D008570 1.4e-06 57.4 52 55.8
THA.LOC104803760 Tarenaya hassleriana HOM05D006532 ORTHO05D008570 1.4e-06 57.4 52 53.8
Glyma.06G085900 Glycine max HOM05D006532 ORTHO05D008570 1.8e-06 57.0 52 59.6
MELO3C011141.2 Cucumis melo HOM05D006532 ORTHO05D008570 2.4e-06 56.6 55 50.9
Nitab4.5_0001894g0020 Nicotiana tabacum HOM05D006532 ORTHO05D008570 2.4e-06 56.6 52 48.1
Nitab4.5_0003794g0050 Nicotiana tabacum HOM05D006532 ORTHO05D008570 2.4e-06 56.6 52 48.1
Sopen08g020510 Solanum pennellii HOM05D006532 ORTHO05D008570 5.3e-06 55.5 53 50.9
PGSC0003DMG402002229 Solanum tuberosum HOM05D006532 ORTHO05D008570 5.3e-06 55.5 53 50.9
Ciclev10008913m.g Citrus clementina HOM05D006532 ORTHO05D008570 9.1e-06 54.7 52 50.0
SalBow4G2374 Salvia bowleyana HOM05D006532 ORTHO05D008570 9.1e-06 54.7 52 55.8


User provided reference genes

Program Settings