Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc11g0003780 Simmondsia chinensis HOM05D004076 ORTHO05D004606 3.0e-179 631.7 320 100.0
AUR62002294 Chenopodium quinoa HOM05D004076 ORTHO05D004606 6.7e-70 268.5 242 57.9
EL10Ac3g05923 Beta vulgaris HOM05D004076 ORTHO05D004606 2.8e-68 263.1 214 64.5
Hma1.2p1_0639F.1_g194000 Hydrangea macrophylla HOM05D004076 ORTHO05D004606 4.2e-64 249.2 307 48.5
Cfa015154 Carpinus fangiana HOM05D004076 ORTHO05D004606 7.2e-64 248.4 226 56.6
TAR633G1822 Trochodendron aralioides HOM05D004076 ORTHO05D004606 1.2e-63 247.7 226 56.6
CiPaw.01G101100 Carya illinoinensis HOM05D004076 ORTHO05D004606 6.1e-63 245.4 220 55.9
Ca_20781_v3 Cicer arietinum L. HOM05D004076 ORTHO05D004606 1.8e-62 243.8 316 43.0
QL10p048538 Quercus lobata HOM05D004076 ORTHO05D004606 1.2e-61 241.1 230 54.8
Dinv44195 Davidia involucrata HOM05D004076 ORTHO05D004606 3.4e-61 239.6 230 54.3
GSVIVG01010749001 Vitis vinifera HOM05D004076 ORTHO05D004606 9.8e-61 238.0 261 49.4
Lj3A198G30 Lonicera japonica HOM05D004076 ORTHO05D004606 2.4e-59 233.4 250 49.6
Manes.04G041450 Manihot esculenta HOM05D004076 ORTHO05D004606 4.5e-58 229.2 223 52.0
TPR.G34235 Trifolium pratense HOM05D004076 ORTHO05D004606 5.9e-58 228.8 234 50.0
Atru.chr3.1528 Acer truncatum HOM05D004076 ORTHO05D004606 7.7e-58 228.4 219 55.3
Lalb_Chr14g0372441 Lupinus albus HOM05D004076 ORTHO05D004606 7.7e-58 228.4 316 44.0
Psat7g213720 Pisum sativum HOM05D004076 ORTHO05D004606 7.7e-58 228.4 224 51.8
Medtr4g067090 Medicago truncatula HOM05D004076 ORTHO05D004606 2.9e-57 226.5 263 46.4
Prupe.1G191700 Prunus persica HOM05D004076 ORTHO05D004606 2.9e-57 226.5 219 53.9
arahy.Tifrunner.gnm1.ann1.68X0LC Arachis hypogaea HOM05D004076 ORTHO05D004606 4.2e-56 222.6 234 50.0
arahy.Tifrunner.gnm1.ann1.KU5ADZ Arachis hypogaea HOM05D004076 ORTHO05D004606 5.5e-56 222.2 234 50.0
TWI63G0993 Tripterygium wilfordii HOM05D004076 ORTHO05D004606 1.2e-55 221.1 220 53.6
TPR.G35423 Trifolium pratense HOM05D004076 ORTHO05D004606 2.1e-55 220.3 236 48.7
Lalb_Chr01g0003201 Lupinus albus HOM05D004076 ORTHO05D004606 2.8e-55 219.9 234 47.9
Thecc.04G186100 Theobroma cacao HOM05D004076 ORTHO05D004606 3.6e-55 219.5 228 51.3
Ca_01262_v3 Cicer arietinum L. HOM05D004076 ORTHO05D004606 4.7e-55 219.2 330 42.1
Actinidia11304 Actinidia chinensis HOM05D004076 ORTHO05D004606 1.4e-54 217.6 219 52.5
Duzib212G0448 Durio zibethinus HOM05D004076 ORTHO05D004606 1.4e-54 217.6 224 55.4
MD04G1007700 Malus domestica HOM05D004076 ORTHO05D004606 1.8e-54 217.2 219 52.5
Actinidia39854 Actinidia chinensis HOM05D004076 ORTHO05D004606 3.0e-54 216.5 217 53.5
PGR031G3172 Punica granatum HOM05D004076 ORTHO05D004606 6.8e-54 215.3 214 51.4
VMungo1127G1790 Vigna mungo HOM05D004076 ORTHO05D004606 8.8e-54 214.9 341 38.1
CsaV3_6G003850 Cucumis sativus L. HOM05D004076 ORTHO05D004606 1.2e-53 214.5 226 52.2
Eucgr.G00183 Eucalyptus grandis HOM05D004076 ORTHO05D004606 3.4e-53 213.0 228 50.9
Rhsim02G0076700 Rhododendron simsii HOM05D004076 ORTHO05D004606 3.4e-53 213.0 248 47.2
Ciclev10020610m.g Citrus clementina HOM05D004076 ORTHO05D004606 4.4e-53 212.6 222 52.3
Phvul.011G055000 Phaseolus vulgaris HOM05D004076 ORTHO05D004606 4.4e-53 212.6 340 38.5
MELO3C011646.2 Cucumis melo HOM05D004076 ORTHO05D004606 7.5e-53 211.8 226 51.3
Eucgr.H00375 Eucalyptus grandis HOM05D004076 ORTHO05D004606 7.5e-53 211.8 237 48.1
Psat1g007120 Pisum sativum HOM05D004076 ORTHO05D004606 7.5e-53 211.8 241 48.1
Lj3g0002927 Lotus japonicus HOM05D004076 ORTHO05D004606 1.3e-52 211.1 235 46.4
Medtr2g098830 Medicago truncatula HOM05D004076 ORTHO05D004606 1.3e-52 211.1 236 46.6
FvH4_4g10700 Fragaria vesca HOM05D004076 ORTHO05D004606 8.3e-52 208.4 229 48.9
RcHm_v2.0_Chr4g0407011 Rosa chinensis HOM05D004076 ORTHO05D004606 1.1e-51 208.0 220 50.0
FAN07G2191 Fragaria x ananassa HOM05D004076 ORTHO05D004606 1.4e-51 207.6 229 48.9
Potri.007G127800 Populus trichocarpa HOM05D004076 ORTHO05D004606 1.4e-51 207.6 224 51.8
Ciclev10020801m.g Citrus clementina HOM05D004076 ORTHO05D004606 1.8e-51 207.2 222 51.4
MBI08_g23493_MAGBIO Magnolia biondii HOM05D004076 ORTHO05D004606 2.4e-51 206.8 210 50.5
Glyma.15G030500 Glycine max HOM05D004076 ORTHO05D004606 5.4e-51 205.7 242 45.5
arahy.Tifrunner.gnm1.ann1.ZR8I8Y Arachis hypogaea HOM05D004076 ORTHO05D004606 1.6e-50 204.1 220 51.4
Peaxi162Scf00297g01124 Petunia axillaris HOM05D004076 ORTHO05D004606 2.7e-50 203.4 219 48.9
Ciclev10023338m.g Citrus clementina HOM05D004076 ORTHO05D004606 3.5e-50 203.0 217 50.7
Sabra07G0104100 Salix brachista HOM05D004076 ORTHO05D004606 5.9e-50 202.2 223 50.7
Oeu032957.2 Olea europaea HOM05D004076 ORTHO05D004606 1.7e-49 200.7 214 49.1
Eucgr.G00179 Eucalyptus grandis HOM05D004076 ORTHO05D004606 2.3e-49 200.3 236 48.7
arahy.Tifrunner.gnm1.ann1.33ZKBH Arachis hypogaea HOM05D004076 ORTHO05D004606 5.0e-49 199.1 220 50.5
Medtr2g098710 Medicago truncatula HOM05D004076 ORTHO05D004606 5.0e-49 199.1 234 47.0
Sabra17G0020100 Salix brachista HOM05D004076 ORTHO05D004606 6.6e-49 198.7 231 48.5
Nitab4.5_0000313g0050 Nicotiana tabacum HOM05D004076 ORTHO05D004606 8.6e-49 198.4 265 42.6
CANSAT78G1401 Cannabis sativa HOM05D004076 ORTHO05D004606 1.5e-48 197.6 225 50.7
FAN17G1176 Fragaria x ananassa HOM05D004076 ORTHO05D004606 4.3e-48 196.1 227 47.6
Sopen07g034480 Solanum pennellii HOM05D004076 ORTHO05D004606 4.3e-48 196.1 218 46.8
Medtr2g098730 Medicago truncatula HOM05D004076 ORTHO05D004606 9.5e-48 194.9 214 50.0
Haze_01517 Corylus avellana HOM05D004076 ORTHO05D004606 4.7e-47 192.6 201 52.2
Medtr2g098720 Medicago truncatula HOM05D004076 ORTHO05D004606 8.0e-47 191.8 234 45.7
Nn1g09697 Nelumbo nucifera HOM05D004076 ORTHO05D004606 1.8e-46 190.7 213 49.3
Lj3g0000298 Lotus japonicus HOM05D004076 ORTHO05D004606 1.5e-45 187.6 327 37.3
Lj6A56T29 Lonicera japonica HOM05D004076 ORTHO05D004606 3.4e-45 186.4 213 46.5
Cc03_g11440 Coffea canephora HOM05D004076 ORTHO05D004606 7.5e-45 185.3 209 48.8
Lsat_1_v5_gn_3_110821 Lactuca sativa HOM05D004076 ORTHO05D004606 6.4e-44 182.2 318 38.1
Sed0018268 Sechium edule HOM05D004076 ORTHO05D004606 1.1e-43 181.4 226 47.3
Eucgr.G00184 Eucalyptus grandis HOM05D004076 ORTHO05D004606 7.0e-43 178.7 209 48.8
Solyc03g121850.3 Solanum lycopersicum HOM05D004076 ORTHO05D004606 7.0e-43 178.7 220 44.1
MSTRG.28249 Avicennia marina HOM05D004076 ORTHO05D004606 9.2e-43 178.3 217 43.8
Gohir.D09G203332 Gossypium hirsutum HOM05D004076 ORTHO05D004606 9.2e-43 178.3 221 46.2
Gorai.006G227200 Gossypium raimondii HOM05D004076 ORTHO05D004606 9.2e-43 178.3 221 46.2
HanXRQChr03g0090111 Helianthus annuus HOM05D004076 ORTHO05D004606 2.0e-42 177.2 214 50.0
Sopen03g040670 Solanum pennellii HOM05D004076 ORTHO05D004606 2.7e-42 176.8 220 44.1
Peaxi162Scf00297g01121 Petunia axillaris HOM05D004076 ORTHO05D004606 4.6e-42 176.0 218 45.4
Gohir.A09G209900 Gossypium hirsutum HOM05D004076 ORTHO05D004606 1.7e-41 174.1 221 45.2
Aqoxy7G02134 Aquilegia oxysepala HOM05D004076 ORTHO05D004606 6.6e-41 172.2 268 41.0
ATR0686G221 Amborella trichopoda HOM05D004076 ORTHO05D004606 8.6e-41 171.8 225 43.6
SalBow3G0974 Salvia bowleyana HOM05D004076 ORTHO05D004606 8.6e-41 171.8 211 40.8
ECA240G0221 Erigeron canadensis HOM05D004076 ORTHO05D004606 1.9e-40 170.6 219 47.0
Medtr0002s1280 Medicago truncatula HOM05D004076 ORTHO05D004606 2.5e-40 170.2 233 40.8
BcaC07g42099 Brassica carinata HOM05D004076 ORTHO05D004606 3.3e-40 169.9 205 41.0
Aqoxy7G02132 Aquilegia oxysepala HOM05D004076 ORTHO05D004606 4.7e-39 166.0 209 43.1
DCAR_031879 Daucus carota HOM05D004076 ORTHO05D004606 8.0e-39 165.2 277 38.6
COL.COLO4_33468 Corchorus olitorius HOM05D004076 ORTHO05D004606 1.1e-38 164.9 216 44.0
Carub.0001s0531 Capsella rubella HOM05D004076 ORTHO05D004606 1.4e-38 164.5 210 43.3
ClCG08G004480 Citrullus lanatus HOM05D004076 ORTHO05D004606 1.4e-38 164.5 347 34.0
PSO832G3772 Papaver somniferum HOM05D004076 ORTHO05D004606 1.8e-38 164.1 213 44.1
Thhalv10007042m.g Eutrema salsugineum HOM05D004076 ORTHO05D004606 3.1e-38 163.3 217 38.7
AL1G15900 Arabidopsis lyrata HOM05D004076 ORTHO05D004606 4.0e-38 162.9 211 42.2
FAN12G1510 Fragaria x ananassa HOM05D004076 ORTHO05D004606 4.0e-38 162.9 181 49.7
Migut.B01848 Erythranthe guttata HOM05D004076 ORTHO05D004606 6.8e-38 162.2 214 41.1
AT1G05950 Arabidopsis thaliana HOM05D004076 ORTHO05D004606 1.2e-37 161.4 205 42.0
A09p67230 Brassica napus HOM05D004076 ORTHO05D004606 1.2e-37 161.4 198 40.9
Eucgr.G00188 Eucalyptus grandis HOM05D004076 ORTHO05D004606 1.2e-37 161.4 197 47.7
Aqoxy7G03601 Aquilegia oxysepala HOM05D004076 ORTHO05D004606 2.0e-37 160.6 236 40.7
BolC8t52680H Brassica oleracea HOM05D004076 ORTHO05D004606 2.6e-37 160.2 232 36.6
BraA09t42056Z Brassica rapa HOM05D004076 ORTHO05D004606 7.5e-37 158.7 232 37.5
FAN12G0055 Fragaria x ananassa HOM05D004076 ORTHO05D004606 7.5e-37 158.7 181 49.2
SalBow5G1086 Salvia bowleyana HOM05D004076 ORTHO05D004606 7.5e-37 158.7 218 39.0
SGA_v2.0_scaffold24G10696 Striga asiatica HOM05D004076 ORTHO05D004606 9.8e-37 158.3 350 33.4
CARHR005480 Cardamine hirsuta HOM05D004076 ORTHO05D004606 1.3e-36 157.9 209 40.2
Ciclev10024150m.g Citrus clementina HOM05D004076 ORTHO05D004606 1.3e-36 157.9 185 48.6
Ciclev10024444m.g Citrus clementina HOM05D004076 ORTHO05D004606 1.3e-36 157.9 185 48.6
C08p51520 Brassica napus HOM05D004076 ORTHO05D004606 1.7e-36 157.5 234 36.8
DCAR_027539 Daucus carota HOM05D004076 ORTHO05D004606 1.7e-36 157.5 222 41.9
Aa31LG1G8350 Aethionema arabicum HOM05D004076 ORTHO05D004606 4.9e-36 156.0 218 39.4
THA.LOC104826195 Tarenaya hassleriana HOM05D004076 ORTHO05D004606 6.4e-36 155.6 217 38.7
Glyma.12G053033 Glycine max HOM05D004076 ORTHO05D004606 5.4e-35 152.5 188 46.3
Nitab4.5_0009641g0050 Nicotiana tabacum HOM05D004076 ORTHO05D004606 4.6e-34 149.4 179 46.4
Cpa.g.sc9.266 Carica papaya HOM05D004076 ORTHO05D004606 1.0e-33 148.3 171 46.8
Nitab4.5_0005003g0040 Nicotiana tabacum HOM05D004076 ORTHO05D004606 6.6e-33 145.6 179 45.3
PGSC0003DMG400002575 Solanum tuberosum HOM05D004076 ORTHO05D004606 1.1e-30 138.3 179 43.6
Eucgr.G00171 Eucalyptus grandis HOM05D004076 ORTHO05D004606 6.4e-28 129.0 131 51.1
Nitab4.5_0002475g0040 Nicotiana tabacum HOM05D004076 ORTHO05D004606 1.1e-27 128.3 216 37.0
Migut.N01559 Erythranthe guttata HOM05D004076 ORTHO05D004606 2.1e-26 124.0 205 35.1
Lj3g0024562 Lotus japonicus HOM05D004076 ORTHO05D004606 7.8e-26 122.1 150 42.7
Zm00001eb318340 Zea mays HOM05D004076 ORTHO05D004606 1.7e-25 120.9 207 35.3
Medtr2g098770 Medicago truncatula HOM05D004076 ORTHO05D004606 3.9e-25 119.8 199 38.7
Glyma.13G343800 Glycine max HOM05D004076 ORTHO05D004606 8.1e-23 112.1 120 46.7
Lj3g0014411 Lotus japonicus HOM05D004076 ORTHO05D004606 2.6e-21 107.1 230 33.0
Lj8A15T44 Lonicera japonica HOM05D004076 ORTHO05D004606 1.3e-20 104.8 99 47.5
COL.COLO4_20907 Corchorus olitorius HOM05D004076 ORTHO05D004606 1.1e-19 101.7 123 44.7
CDE08G1584 Ceratophyllum demersum HOM05D004076 ORTHO05D004606 8.7e-17 92.0 219 30.1
AUR62015396 Chenopodium quinoa HOM05D004076 ORTHO05D004606 4.3e-16 89.7 90 52.2
Sp1g04770 Schrenkiella parvula HOM05D004076 ORTHO05D004606 9.6e-16 88.6 131 37.4
Glyma.11G128400 Glycine max HOM05D004076 ORTHO05D004606 3.2e-11 73.6 154 30.5
SHI23539 Sapria himalayana HOM05D004076 ORTHO05D004606 2.7e-10 70.5 56 62.5
Os09g0514500 Oryza sativa ssp. japonica HOM05D004076 ORTHO05D004606 2.3e-09 67.4 77 41.6
SEGI_36759 Sequoiadendron giganteum HOM05D004076 ORTHO05D004606 1.3e-07 61.6 143 28.7
Sed0002856 Sechium edule HOM05D004076 ORTHO05D004606 2.1e-07 60.8 112 39.3
SEGI_13457 Sequoiadendron giganteum HOM05D035915 ORTHO05D004606 9.0e-06 55.5 84 35.7


User provided reference genes

Program Settings