Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc11g0003600 Simmondsia chinensis HOM05D003587 ORTHO05D004139 3.8e-76 288.1 146 100.0
Ah.06g194980 Amaranthus hybridus HOM05D003587 ORTHO05D004139 9.9e-53 210.3 133 78.9
AUR62006588 Chenopodium quinoa HOM05D003587 ORTHO05D004139 1.7e-52 209.5 133 78.2
Hund07482 Selenicereus undatus HOM05D003587 ORTHO05D004139 1.9e-51 206.1 133 75.9
AUR62000241 Chenopodium quinoa HOM05D003587 ORTHO05D004139 4.2e-51 204.9 133 75.9
EL10Ac4g10057 Beta vulgaris HOM05D003587 ORTHO05D004139 1.2e-50 203.4 133 77.4
Rhsim13G0203000 Rhododendron simsii HOM05D003587 ORTHO05D004139 2.1e-50 202.6 131 75.6
Dinv35888 Davidia involucrata HOM05D003587 ORTHO05D004139 2.7e-50 202.2 133 72.9
Cc01_g07130 Coffea canephora HOM05D003587 ORTHO05D004139 1.0e-49 200.3 133 73.7
vmacro04091 Vaccinium macrocarpon HOM05D003587 ORTHO05D004139 1.8e-49 199.5 131 74.8
Potri.001G224950 Populus trichocarpa HOM05D003587 ORTHO05D004139 3.0e-49 198.7 133 74.4
Actinidia07008 Actinidia chinensis HOM05D003587 ORTHO05D004139 6.7e-49 197.6 132 73.5
Migut.D00702 Erythranthe guttata HOM05D003587 ORTHO05D004139 6.7e-49 197.6 133 73.7
GSVIVG01037380001 Vitis vinifera HOM05D003587 ORTHO05D004139 8.7e-49 197.2 133 73.7
COL.COLO4_00327 Corchorus olitorius HOM05D003587 ORTHO05D004139 1.1e-48 196.8 134 74.6
Haze_23544 Corylus avellana HOM05D003587 ORTHO05D004139 1.1e-48 196.8 133 72.2
Cfa010158 Carpinus fangiana HOM05D003587 ORTHO05D004139 1.5e-48 196.4 133 71.4
QL01p020717 Quercus lobata HOM05D003587 ORTHO05D004139 1.9e-48 196.1 133 72.9
Sabra16G0133600 Salix brachista HOM05D003587 ORTHO05D004139 1.9e-48 196.1 133 73.7
CiPaw.13G146000 Carya illinoinensis HOM05D003587 ORTHO05D004139 3.3e-48 195.3 133 71.4
PGSC0003DMG400027414 Solanum tuberosum HOM05D003587 ORTHO05D004139 4.3e-48 194.9 133 71.4
Solyc11g072170.2 Solanum lycopersicum HOM05D003587 ORTHO05D004139 7.4e-48 194.1 133 72.2
Aqoxy1G00052 Aquilegia oxysepala HOM05D003587 ORTHO05D004139 9.6e-48 193.7 131 74.0
CAN.G1085.3 Capsicum annuum HOM05D003587 ORTHO05D004139 9.6e-48 193.7 133 72.2
Sed0023945 Sechium edule HOM05D003587 ORTHO05D004139 9.6e-48 193.7 132 68.9
Duzib150G0536 Durio zibethinus HOM05D003587 ORTHO05D004139 1.3e-47 193.4 133 72.2
Manes.02G134100 Manihot esculenta HOM05D003587 ORTHO05D004139 1.6e-47 193.0 141 69.5
Hma1.2p1_1632F.1_g294660 Hydrangea macrophylla HOM05D003587 ORTHO05D004139 2.1e-47 192.6 130 73.8
MSTRG.21324 Avicennia marina HOM05D003587 ORTHO05D004139 2.8e-47 192.2 131 71.0
Nn2g14595 Nelumbo nucifera HOM05D003587 ORTHO05D004139 2.8e-47 192.2 130 70.8
MD03G1163300 Malus domestica HOM05D003587 ORTHO05D004139 3.7e-47 191.8 137 70.8
Eucgr.B03764 Eucalyptus grandis HOM05D003587 ORTHO05D004139 8.2e-47 190.7 130 72.3
THA.LOC104811210 Tarenaya hassleriana HOM05D003587 ORTHO05D004139 8.2e-47 190.7 131 72.5
Ca_06175_v3 Cicer arietinum L. HOM05D003587 ORTHO05D004139 1.1e-46 190.3 132 69.7
Ciclev10018028m.g Citrus clementina HOM05D003587 ORTHO05D004139 1.1e-46 190.3 130 72.3
SalBow6G4759 Salvia bowleyana HOM05D003587 ORTHO05D004139 1.1e-46 190.3 133 72.2
SGA_v2.0_scaffold8G04523 Striga asiatica HOM05D003587 ORTHO05D004139 1.1e-46 190.3 133 71.4
CsaV3_1G041910 Cucumis sativus L. HOM05D003587 ORTHO05D004139 3.1e-46 188.7 132 68.9
Psat0s2703g0240 Pisum sativum HOM05D003587 ORTHO05D004139 5.3e-46 188.0 132 68.2
Prupe.4G269300 Prunus persica HOM05D003587 ORTHO05D004139 6.9e-46 187.6 137 69.3
CANSAT54G0304 Cannabis sativa HOM05D003587 ORTHO05D004139 9.0e-46 187.2 133 69.9
HanXRQChr12g0378151 Helianthus annuus HOM05D003587 ORTHO05D004139 9.0e-46 187.2 133 67.7
Cpa.g.sc34.194 Carica papaya HOM05D003587 ORTHO05D004139 1.5e-45 186.4 129 70.5
ATR0782G174 Amborella trichopoda HOM05D003587 ORTHO05D004139 2.6e-45 185.7 131 67.9
LjContig00564g0003567 Lotus japonicus HOM05D003587 ORTHO05D004139 2.6e-45 185.7 136 69.1
Medtr5g088730 Medicago truncatula HOM05D003587 ORTHO05D004139 4.5e-45 184.9 132 67.4
Nitab4.5_0002567g0150 Nicotiana tabacum HOM05D003587 ORTHO05D004139 4.5e-45 184.9 148 64.2
Thecc.09G250900 Theobroma cacao HOM05D003587 ORTHO05D004139 4.5e-45 184.9 136 69.1
Nitab4.5_0002161g0020 Nicotiana tabacum HOM05D003587 ORTHO05D004139 1.3e-44 183.3 148 63.5
Aa31LG1G8880 Aethionema arabicum HOM05D003587 ORTHO05D004139 2.2e-44 182.6 132 67.4
AL6G31010 Arabidopsis lyrata HOM05D003587 ORTHO05D004139 2.2e-44 182.6 131 69.5
AT5G19500 Arabidopsis thaliana HOM05D003587 ORTHO05D004139 2.2e-44 182.6 130 70.8
TWI59G0614 Tripterygium wilfordii HOM05D003587 ORTHO05D004139 2.2e-44 182.6 131 69.5
CARHR193400 Cardamine hirsuta HOM05D003587 ORTHO05D004139 2.9e-44 182.2 132 68.9
ClCG03G014310 Citrullus lanatus HOM05D003587 ORTHO05D004139 2.9e-44 182.2 132 65.2
Gorai.006G123700 Gossypium raimondii HOM05D003587 ORTHO05D004139 2.9e-44 182.2 133 69.9
PSO357G0695 Papaver somniferum HOM05D003587 ORTHO05D004139 2.9e-44 182.2 130 68.5
RcHm_v2.0_Chr5g0050121 Rosa chinensis HOM05D003587 ORTHO05D004139 2.9e-44 182.2 129 71.3
CDE02G1319 Ceratophyllum demersum HOM05D003587 ORTHO05D004139 1.1e-43 180.3 133 67.7
Thhalv10013310m.g Eutrema salsugineum HOM05D003587 ORTHO05D004139 1.9e-43 179.5 132 69.7
Carub.0006s1785 Capsella rubella HOM05D003587 ORTHO05D004139 2.5e-43 179.1 132 67.4
Gohir.A09G109701 Gossypium hirsutum HOM05D003587 ORTHO05D004139 4.2e-43 178.3 133 69.2
Sp6g24900 Schrenkiella parvula HOM05D003587 ORTHO05D004139 4.2e-43 178.3 131 67.9
BcaB05g23382 Brassica carinata HOM05D003587 ORTHO05D004139 2.1e-42 176.0 131 68.7
Zm00001eb329970 Zea mays HOM05D003587 ORTHO05D004139 2.7e-42 175.6 130 68.5
FvH4_3g27580 Fragaria vesca HOM05D003587 ORTHO05D004139 1.3e-41 173.3 125 70.4
A02p05580 Brassica napus HOM05D003587 ORTHO05D004139 2.3e-41 172.6 130 69.2
BraA02t05510Z Brassica rapa HOM05D003587 ORTHO05D004139 2.3e-41 172.6 130 69.2
BcaC03g13680 Brassica carinata HOM05D003587 ORTHO05D004139 1.5e-40 169.9 130 68.5
BNapus_Darmor_BZH_scaffold_38p02370 Brassica napus HOM05D003587 ORTHO05D004139 1.5e-40 169.9 130 68.5
BolC2t06958H Brassica oleracea HOM05D003587 ORTHO05D004139 1.5e-40 169.9 130 68.5
arahy.Tifrunner.gnm1.ann1.XHSV0C Arachis hypogaea HOM05D003587 ORTHO05D004139 4.3e-40 168.3 133 64.7
SMO115G0099 Selaginella moellendorffii HOM05D003587 ORTHO05D004139 9.0e-38 160.6 132 63.6
SMO115G0193 Selaginella moellendorffii HOM05D003587 ORTHO05D004139 2.6e-37 159.1 129 65.1
Mapoly0007s0093 Marchantia polymorpha HOM05D003587 ORTHO05D004139 4.5e-37 158.3 129 66.7
Gohir.D09G106200 Gossypium hirsutum HOM05D003587 ORTHO05D004139 2.9e-36 155.6 133 62.4
Oeu025946.1 Olea europaea HOM05D003587 ORTHO05D004139 5.0e-36 154.8 100 75.0
unitig_0.g312 Utricularia gibba HOM05D003587 ORTHO05D004139 8.5e-36 154.1 119 67.2
CSS0013509 Camellia sinensis var. sinensis HOM05D003587 ORTHO05D004139 4.2e-35 151.8 101 72.3
HPP92_001660 Vanilla planifolia HOM05D003587 ORTHO05D004139 2.1e-34 149.4 110 70.0
SEGI_40232 Sequoiadendron giganteum HOM05D003587 ORTHO05D004139 1.4e-33 146.7 124 60.5
Lalb_Chr10g0106031 Lupinus albus HOM05D003587 ORTHO05D004139 5.1e-33 144.8 99 65.7
Pp3c11_25650 Physcomitrium patens HOM05D003587 ORTHO05D004139 8.8e-33 144.1 129 56.6
AagrBONN_evm.TU.Sc2ySwM_344.2860 Anthoceros agrestis HOM05D003587 ORTHO05D004139 6.9e-30 134.4 131 55.0
Peaxi162Scf00234g00315 Petunia axillaris HOM05D003587 ORTHO05D004139 7.2e-27 124.4 99 61.6
ECA233G3436 Erigeron canadensis HOM05D003587 ORTHO05D000001 3.7e-23 112.1 74 73.0
PRCOL_00002329 Prasinoderma coloniale HOM05D003587 ORTHO05D004139 6.3e-23 111.3 111 54.1
arahy.Tifrunner.gnm1.ann1.Y38JVD Arachis hypogaea HOM05D003587 ORTHO05D004139 1.8e-22 109.8 133 48.1
Lsat_1_v5_gn_5_64961 Lactuca sativa HOM05D003587 ORTHO05D004139 1.0e-20 104.0 72 69.4
MCO13G640 Micromonas commoda HOM05D003587 ORTHO05D004139 3.0e-17 92.4 132 41.7
Cre13.g572200 Chlamydomonas reinhardtii HOM05D003587 ORTHO05D004139 4.8e-15 85.1 96 43.8
Mapoly0013s0120 Marchantia polymorpha HOM05D007626 ORTHO05D009633 6.1e-10 68.2 134 35.8
AagrBONN_evm.TU.Sc2ySwM_368.520 Anthoceros agrestis HOM05D007626 ORTHO05D009633 6.7e-09 64.7 139 34.5
Pp3c10_5160 Physcomitrium patens HOM05D007626 ORTHO05D009633 8.8e-09 64.3 129 31.8
Lj2A826T21 Lonicera japonica HOM05D003587 ORTHO05D004139 2.6e-08 62.8 55 58.2
Pp3c8_8340 Physcomitrium patens HOM05D003587 ORTHO05D004139 1.7e-07 60.1 156 26.9
Potri.010G221900 Populus trichocarpa HOM05D003587 ORTHO05D004139 3.7e-07 58.9 163 31.9
Lalb_Chr19g0129681 Lupinus albus HOM05D003587 ORTHO05D004139 2.4e-06 56.2 132 34.1
Sabra10G0171700 Salix brachista HOM05D003587 ORTHO05D004139 2.4e-06 56.2 154 30.5


User provided reference genes

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