Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc11g0003590 Simmondsia chinensis HOM05D003587 ORTHO05D004139 7.3e-147 523.9 262 100.0
Actinidia07008 Actinidia chinensis HOM05D003587 ORTHO05D004139 4.4e-59 232.3 219 59.4
Cfa010158 Carpinus fangiana HOM05D003587 ORTHO05D004139 4.4e-59 232.3 233 56.7
AUR62006588 Chenopodium quinoa HOM05D003587 ORTHO05D004139 4.8e-58 228.8 221 59.3
CSS0013509 Camellia sinensis var. sinensis HOM05D003587 ORTHO05D004139 6.3e-58 228.4 225 57.3
Duzib150G0536 Durio zibethinus HOM05D003587 ORTHO05D004139 6.3e-58 228.4 219 58.4
Rhsim13G0203000 Rhododendron simsii HOM05D003587 ORTHO05D004139 8.3e-58 228.0 229 57.2
COL.COLO4_00327 Corchorus olitorius HOM05D003587 ORTHO05D004139 3.1e-57 226.1 219 58.0
CsaV3_1G041910 Cucumis sativus L. HOM05D003587 ORTHO05D004139 3.1e-57 226.1 219 56.2
GSVIVG01037380001 Vitis vinifera HOM05D003587 ORTHO05D004139 3.1e-57 226.1 219 56.2
Dinv35888 Davidia involucrata HOM05D003587 ORTHO05D004139 1.2e-56 224.2 215 59.1
Manes.02G134100 Manihot esculenta HOM05D003587 ORTHO05D004139 1.2e-56 224.2 219 58.9
Gohir.A09G109701 Gossypium hirsutum HOM05D003587 ORTHO05D004139 1.6e-56 223.8 220 57.7
Ah.06g194980 Amaranthus hybridus HOM05D003587 ORTHO05D004139 2.0e-56 223.4 242 55.4
Thecc.09G250900 Theobroma cacao HOM05D003587 ORTHO05D004139 2.0e-56 223.4 219 57.5
Potri.001G224950 Populus trichocarpa HOM05D003587 ORTHO05D004139 3.5e-56 222.6 219 57.1
Sed0023945 Sechium edule HOM05D003587 ORTHO05D004139 3.5e-56 222.6 219 55.7
Sabra16G0133600 Salix brachista HOM05D003587 ORTHO05D004139 4.5e-56 222.2 233 54.5
PGSC0003DMG400027414 Solanum tuberosum HOM05D003587 ORTHO05D004139 5.9e-56 221.9 219 56.2
MSTRG.21324 Avicennia marina HOM05D003587 ORTHO05D004139 1.3e-55 220.7 219 54.8
CAN.G1085.3 Capsicum annuum HOM05D003587 ORTHO05D004139 1.3e-55 220.7 219 56.6
CDE02G1319 Ceratophyllum demersum HOM05D003587 ORTHO05D004139 1.3e-55 220.7 233 52.8
ECA233G3436 Erigeron canadensis HOM05D003587 ORTHO05D000001 1.7e-55 220.3 219 56.2
THA.LOC104811210 Tarenaya hassleriana HOM05D003587 ORTHO05D004139 1.7e-55 220.3 219 55.7
CANSAT54G0304 Cannabis sativa HOM05D003587 ORTHO05D004139 2.3e-55 219.9 219 56.6
Ciclev10018028m.g Citrus clementina HOM05D003587 ORTHO05D004139 2.3e-55 219.9 233 54.5
Gohir.D09G106200 Gossypium hirsutum HOM05D003587 ORTHO05D004139 2.3e-55 219.9 220 56.8
Gorai.006G123700 Gossypium raimondii HOM05D003587 ORTHO05D004139 2.3e-55 219.9 220 56.8
PSO357G0695 Papaver somniferum HOM05D003587 ORTHO05D004139 5.0e-55 218.8 233 53.2
TWI59G0614 Tripterygium wilfordii HOM05D003587 ORTHO05D004139 8.6e-55 218.0 220 57.3
Hund07482 Selenicereus undatus HOM05D003587 ORTHO05D004139 1.1e-54 217.6 219 57.1
CiPaw.13G146000 Carya illinoinensis HOM05D003587 ORTHO05D004139 2.5e-54 216.5 233 53.6
Prupe.4G269300 Prunus persica HOM05D003587 ORTHO05D004139 4.2e-54 215.7 219 55.7
Solyc11g072170.2 Solanum lycopersicum HOM05D003587 ORTHO05D004139 1.6e-53 213.8 225 54.2
Eucgr.B03764 Eucalyptus grandis HOM05D003587 ORTHO05D004139 3.6e-53 212.6 219 53.4
Hma1.2p1_1632F.1_g294660 Hydrangea macrophylla HOM05D003587 ORTHO05D004139 6.1e-53 211.8 219 56.2
Nn2g14595 Nelumbo nucifera HOM05D003587 ORTHO05D004139 6.1e-53 211.8 233 51.5
SalBow6G4759 Salvia bowleyana HOM05D003587 ORTHO05D004139 1.0e-52 211.1 219 54.3
TPR.G16429 Trifolium pratense HOM05D003587 ORTHO05D004139 1.4e-52 210.7 228 52.6
HanXRQChr12g0378151 Helianthus annuus HOM05D003587 ORTHO05D004139 5.2e-52 208.8 219 54.3
TAR623G1513 Trochodendron aralioides HOM05D003587 ORTHO05D004139 1.5e-51 207.2 219 52.5
Medtr5g088730 Medicago truncatula HOM05D003587 ORTHO05D004139 3.4e-51 206.1 219 53.0
AL6G31010 Arabidopsis lyrata HOM05D003587 ORTHO05D004139 4.4e-51 205.7 217 54.4
LjContig00564g0003567 Lotus japonicus HOM05D003587 ORTHO05D004139 4.4e-51 205.7 219 53.0
Aqoxy1G00052 Aquilegia oxysepala HOM05D003587 ORTHO05D004139 1.3e-50 204.1 233 49.4
Carub.0006s1785 Capsella rubella HOM05D003587 ORTHO05D004139 1.3e-50 204.1 220 54.1
Lalb_Chr10g0106041 Lupinus albus HOM05D003587 ORTHO05D004139 2.8e-50 203.0 222 53.6
Ca_06175_v3 Cicer arietinum L. HOM05D003587 ORTHO05D004139 4.9e-50 202.2 219 51.1
Psat0s2703g0240 Pisum sativum HOM05D003587 ORTHO05D004139 4.9e-50 202.2 229 51.1
Thhalv10013310m.g Eutrema salsugineum HOM05D003587 ORTHO05D004139 6.3e-50 201.8 229 52.0
AT5G19500 Arabidopsis thaliana HOM05D003587 ORTHO05D004139 8.3e-50 201.4 217 53.5
arahy.Tifrunner.gnm1.ann1.Y38JVD Arachis hypogaea HOM05D003587 ORTHO05D004139 1.4e-49 200.7 221 55.7
A02p05580 Brassica napus HOM05D003587 ORTHO05D004139 1.4e-49 200.7 216 52.3
BraA02t05510Z Brassica rapa HOM05D003587 ORTHO05D004139 1.4e-49 200.7 216 52.3
BcaC03g13680 Brassica carinata HOM05D003587 ORTHO05D004139 1.8e-49 200.3 216 52.3
BolC2t06958H Brassica oleracea HOM05D003587 ORTHO05D004139 1.8e-49 200.3 216 52.3
Sp6g24900 Schrenkiella parvula HOM05D003587 ORTHO05D004139 3.2e-49 199.5 216 53.2
HPP92_001660 Vanilla planifolia HOM05D003587 ORTHO05D004139 4.1e-49 199.1 219 52.1
Cc01_g07130 Coffea canephora HOM05D003587 ORTHO05D004139 7.0e-49 198.4 219 51.6
BcaB05g23382 Brassica carinata HOM05D003587 ORTHO05D004139 1.6e-48 197.2 216 51.9
CARHR193400 Cardamine hirsuta HOM05D003587 ORTHO05D004139 4.5e-48 195.7 212 53.8
Aa31LG1G8880 Aethionema arabicum HOM05D003587 ORTHO05D004139 5.9e-48 195.3 234 50.0
RcHm_v2.0_Chr5g0050121 Rosa chinensis HOM05D003587 ORTHO05D004139 2.3e-47 193.4 219 52.1
Oeu025946.1 Olea europaea HOM05D003587 ORTHO05D004139 2.9e-47 193.0 159 65.4
FvH4_3g27580 Fragaria vesca HOM05D003587 ORTHO05D004139 8.6e-47 191.4 216 52.3
unitig_0.g312 Utricularia gibba HOM05D003587 ORTHO05D004139 3.3e-46 189.5 219 49.8
BNapus_Darmor_BZH_scaffold_38p02370 Brassica napus HOM05D003587 ORTHO05D004139 2.8e-45 186.4 241 46.9
Zm00001eb329970 Zea mays HOM05D003587 ORTHO05D004139 9.8e-43 177.9 201 51.2
Lsat_1_v5_gn_5_64961 Lactuca sativa HOM05D003587 ORTHO05D004139 6.4e-42 175.3 219 49.8
Migut.D00702 Erythranthe guttata HOM05D003587 ORTHO05D004139 8.3e-42 174.9 178 53.4
Mapoly0007s0093 Marchantia polymorpha HOM05D003587 ORTHO05D004139 1.0e-39 167.9 222 45.9
SMO115G0099 Selaginella moellendorffii HOM05D003587 ORTHO05D004139 6.6e-39 165.2 233 43.3
SMO115G0193 Selaginella moellendorffii HOM05D003587 ORTHO05D004139 6.6e-39 165.2 233 43.3
Pp3c11_25650 Physcomitrium patens HOM05D003587 ORTHO05D004139 2.5e-38 163.3 236 44.5
vmacro04091 Vaccinium macrocarpon HOM05D003587 ORTHO05D004139 2.0e-35 153.7 401 32.4
MD03G1163300 Malus domestica HOM05D003587 ORTHO05D004139 1.7e-34 150.6 173 49.7
ATR0782G174 Amborella trichopoda HOM05D003587 ORTHO05D004139 6.6e-31 138.7 187 42.8
AagrBONN_evm.TU.Sc2ySwM_344.2860 Anthoceros agrestis HOM05D003587 ORTHO05D004139 2.8e-29 133.3 222 39.6
Peaxi162Scf00234g00315 Petunia axillaris HOM05D003587 ORTHO05D004139 6.2e-29 132.1 225 42.2
EL10Ac4g10057 Beta vulgaris HOM05D003587 ORTHO05D004139 1.4e-28 131.0 232 41.8
ClCG03G014310 Citrullus lanatus HOM05D003587 ORTHO05D004139 4.4e-27 125.9 236 39.4
AUR62000241 Chenopodium quinoa HOM05D003587 ORTHO05D004139 3.7e-26 122.9 219 39.7
Nitab4.5_0002161g0020 Nicotiana tabacum HOM05D003587 ORTHO05D004139 3.0e-23 113.2 229 37.1
Lj2A826G17 Lonicera japonica HOM05D003587 ORTHO05D004139 8.6e-23 111.7 74 77.0
Nitab4.5_0002567g0150 Nicotiana tabacum HOM05D003587 ORTHO05D004139 7.3e-22 108.6 225 36.9
Sopen11g029820 Solanum pennellii HOM05D003587 ORTHO05D004139 9.6e-22 108.2 74 73.0
MCO13G640 Micromonas commoda HOM05D003587 ORTHO05D004139 2.1e-16 90.5 225 29.8
PRCOL_00002329 Prasinoderma coloniale HOM05D003587 ORTHO05D004139 2.3e-15 87.0 139 36.0
Cre13.g572200 Chlamydomonas reinhardtii HOM05D003587 ORTHO05D004139 1.9e-14 84.0 131 37.4
QL01p020717 Quercus lobata HOM05D003587 ORTHO05D004139 4.8e-13 79.3 158 38.0
Cpa.g.sc34.195 Carica papaya HOM05D003587 ORTHO05D004139 7.1e-09 65.5 45 77.8
SEGI_26742 Sequoiadendron giganteum HOM05D003587 ORTHO05D004139 9.3e-09 65.1 148 33.1
SEGI_29926 Sequoiadendron giganteum HOM05D003587 ORTHO05D004139 9.3e-09 65.1 148 33.1
QL01p000796 Quercus lobata HOM05D003587 ORTHO05D004139 1.6e-08 64.3 45 66.7
Aqoxy3G02282_Aqoxy3G02283 Aquilegia oxysepala HOM05D003587 ORTHO05D004139 2.7e-08 63.5 228 30.3
MD03G1163200 Malus domestica HOM05D003587 ORTHO05D004139 4.6e-08 62.8 46 69.6
AagrBONN_evm.TU.Sc2ySwM_228.3870 Anthoceros agrestis HOM05D003587 ORTHO05D004139 1.0e-07 61.6 147 28.6
Lj2A826G18 Lonicera japonica HOM05D003587 ORTHO05D004139 1.3e-07 61.2 101 36.6
Cfa021506 Carpinus fangiana HOM05D003587 ORTHO05D004139 2.3e-07 60.5 223 25.1
CDE05G3302 Ceratophyllum demersum HOM05D003587 ORTHO05D004139 3.0e-07 60.1 152 30.3
Lalb_Chr19g0129681 Lupinus albus HOM05D003587 ORTHO05D004139 6.6e-07 58.9 134 29.9
FAN25G2256 Fragaria x ananassa HOM05D003587 ORTHO05D004139 1.9e-06 57.4 88 47.7
Glyma.16G154700 Glycine max HOM05D003587 ORTHO05D004139 3.3e-06 56.6 223 26.0
Hma1.2p1_1004F.1_g246830 Hydrangea macrophylla HOM05D003587 ORTHO05D004139 4.3e-06 56.2 226 23.5
arahy.Tifrunner.gnm1.ann1.TJZR4S Arachis hypogaea HOM05D003587 ORTHO05D004139 9.6e-06 55.1 223 25.1
Gohir.D13G022900 Gossypium hirsutum HOM05D003587 ORTHO05D004139 9.6e-06 55.1 216 24.1


User provided reference genes

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