Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc11g0003550 Simmondsia chinensis HOM05D006037 ORTHO05D007384 1.9e-228 795.4 386 100.0
MD16G1039700 Malus domestica HOM05D006037 ORTHO05D007384 2.7e-150 535.8 391 65.2
EL10Ac6g14338 Beta vulgaris HOM05D006037 ORTHO05D007384 3.6e-150 535.4 375 68.3
arahy.Tifrunner.gnm1.ann1.CBB0MY Arachis hypogaea HOM05D006037 ORTHO05D007384 6.3e-147 524.6 380 65.3
FvH4_4g26975 Fragaria vesca HOM05D006037 ORTHO05D007384 1.8e-146 523.1 379 65.2
TAR622G1007 Trochodendron aralioides HOM05D006037 ORTHO05D007384 7.0e-146 521.2 376 65.7
arahy.Tifrunner.gnm1.ann1.NA36PT Arachis hypogaea HOM05D006037 ORTHO05D007384 1.6e-145 520.0 380 64.5
Aqoxy3G00235 Aquilegia oxysepala HOM05D006037 ORTHO05D007384 3.5e-145 518.8 378 65.1
FAN12G3404 Fragaria x ananassa HOM05D006037 ORTHO05D007384 1.7e-144 516.5 396 62.9
Potri.010G122100 Populus trichocarpa HOM05D006037 ORTHO05D007384 1.9e-143 513.1 379 63.6
Medtr1g110300 Medicago truncatula HOM05D006037 ORTHO05D007384 2.5e-143 512.7 378 63.5
CANSAT01G2894 Cannabis sativa HOM05D006037 ORTHO05D007384 4.7e-142 508.4 380 62.6
PSO017G5347 Papaver somniferum HOM05D006037 ORTHO05D007384 6.1e-142 508.1 379 62.5
FAN22G1751 Fragaria x ananassa HOM05D006037 ORTHO05D007384 2.3e-141 506.1 424 58.5
RcHm_v2.0_Chr4g0434781 Rosa chinensis HOM05D006037 ORTHO05D007384 2.3e-141 506.1 333 69.4
PSO478G0980 Papaver somniferum HOM05D006037 ORTHO05D007384 3.0e-141 505.8 379 62.5
AUR62037301 Chenopodium quinoa HOM05D006037 ORTHO05D007384 8.8e-141 504.2 493 53.1
CiPaw.05G240100 Carya illinoinensis HOM05D006037 ORTHO05D007384 1.2e-140 503.8 378 64.3
Sabra10G0092200 Salix brachista HOM05D006037 ORTHO05D007384 1.5e-140 503.4 379 62.3
Ciclev10014910m.g Citrus clementina HOM05D006037 ORTHO05D007384 2.0e-140 503.1 379 62.0
THA.LOC104821921 Tarenaya hassleriana HOM05D006037 ORTHO05D007384 2.0e-140 503.1 379 63.1
AUR62002836 Chenopodium quinoa HOM05D006037 ORTHO05D007384 2.6e-140 502.7 331 71.9
SalBow8G2496 Salvia bowleyana HOM05D006037 ORTHO05D007384 5.7e-140 501.5 346 68.5
SalBow8G4457 Salvia bowleyana HOM05D006037 ORTHO05D007384 5.7e-140 501.5 346 68.5
CSS0045711 Camellia sinensis var. sinensis HOM05D006037 ORTHO05D007384 9.7e-140 500.7 373 65.4
GSVIVG01011862001 Vitis vinifera HOM05D006037 ORTHO05D007384 6.3e-139 498.0 333 70.6
CSS0026176 Camellia sinensis var. sinensis HOM05D006037 ORTHO05D007384 1.4e-138 496.9 373 65.1
Prupe.1G314400 Prunus persica HOM05D006037 ORTHO05D007384 1.4e-138 496.9 333 68.8
MD13G1039000 Malus domestica HOM05D006037 ORTHO05D007384 2.4e-138 496.1 323 70.3
Lalb_Chr06g0165941 Lupinus albus HOM05D006037 ORTHO05D007384 5.3e-138 495.0 333 67.6
TPR.G4859 Trifolium pratense HOM05D006037 ORTHO05D007384 7.0e-138 494.6 333 68.8
Duzib248G1272 Durio zibethinus HOM05D006037 ORTHO05D007384 2.0e-137 493.0 379 62.5
Lj5g0002773 Lotus japonicus HOM05D006037 ORTHO05D007384 2.0e-137 493.0 333 67.3
Nn3g17908 Nelumbo nucifera HOM05D006037 ORTHO05D007384 2.7e-137 492.7 379 60.7
Cc11_g09830 Coffea canephora HOM05D006037 ORTHO05D007384 5.9e-137 491.5 343 66.8
PGR102G0142 Punica granatum HOM05D006037 ORTHO05D007384 7.7e-137 491.1 378 62.7
Psat6g225720 Pisum sativum HOM05D006037 ORTHO05D007384 1.0e-136 490.7 333 67.3
MBI09_g07743_MAGBIO Magnolia biondii HOM05D006037 ORTHO05D007384 2.9e-136 489.2 379 61.2
Rhsim09G0105100 Rhododendron simsii HOM05D006037 ORTHO05D007384 2.9e-136 489.2 381 63.3
Gorai.005G192200 Gossypium raimondii HOM05D006037 ORTHO05D007384 3.8e-136 488.8 351 67.2
SGA_v2.0_scaffold38G14964 Striga asiatica HOM05D006037 ORTHO05D000229 2.5e-135 486.1 386 61.7
Glyma.20G118000 Glycine max HOM05D006037 ORTHO05D007384 2.1e-134 483.0 332 66.3
Manes.14G105200 Manihot esculenta HOM05D006037 ORTHO05D007384 2.1e-134 483.0 333 67.6
Thecc.02G224800 Theobroma cacao HOM05D006037 ORTHO05D007384 2.7e-134 482.6 330 69.1
Aa31LG7G9120 Aethionema arabicum HOM05D006037 ORTHO05D007384 1.0e-133 480.7 373 61.7
Thhalv10007371m.g Eutrema salsugineum HOM05D006037 ORTHO05D007384 1.0e-133 480.7 379 61.7
Carub.0001s2514 Capsella rubella HOM05D006037 ORTHO05D007384 1.8e-133 479.9 375 61.3
Ca_11141_v3 Cicer arietinum L. HOM05D006037 ORTHO05D007384 1.8e-133 479.9 318 68.9
Ca_11146_v3 Cicer arietinum L. HOM05D006037 ORTHO05D007384 1.8e-133 479.9 318 68.9
AT1G25375 Arabidopsis thaliana HOM05D006037 ORTHO05D007384 4.0e-133 478.8 375 61.9
Phvul.007G029700 Phaseolus vulgaris HOM05D006037 ORTHO05D007384 4.0e-133 478.8 333 64.3
AL1G39950 Arabidopsis lyrata HOM05D006037 ORTHO05D007384 8.8e-133 477.6 375 61.6
VMungo0720G2449 Vigna mungo HOM05D006037 ORTHO05D007384 1.5e-132 476.9 323 66.9
Haze_00627 Corylus avellana HOM05D006037 ORTHO05D007384 2.6e-132 476.1 390 61.0
Gohir.D02G171000 Gossypium hirsutum HOM05D006037 ORTHO05D007384 3.4e-132 475.7 330 68.8
Atru.chr11.165 Acer truncatum HOM05D006037 ORTHO05D007384 2.2e-131 473.0 323 68.1
CAN.G610.57 Capsicum annuum HOM05D006037 ORTHO05D007384 3.7e-131 472.2 382 60.7
Gohir.A03G147800 Gossypium hirsutum HOM05D006037 ORTHO05D007384 4.8e-131 471.9 330 68.8
Nitab4.5_0001616g0090 Nicotiana tabacum HOM05D006037 ORTHO05D007384 1.4e-130 470.3 401 58.6
Potri.010G122000 Populus trichocarpa HOM05D006037 ORTHO05D007384 1.4e-130 470.3 333 67.6
AUR62037303 Chenopodium quinoa HOM05D006037 ORTHO05D007384 9.1e-130 467.6 328 69.8
Sabra10G0092100 Salix brachista HOM05D006037 ORTHO05D007384 1.2e-129 467.2 323 67.2
C05p25140 Brassica napus HOM05D006037 ORTHO05D007384 1.6e-129 466.8 379 60.4
MSTRG.7652 Avicennia marina HOM05D006037 ORTHO05D007384 2.0e-129 466.5 333 65.8
BcaC05g26674 Brassica carinata HOM05D006037 ORTHO05D007384 2.0e-129 466.5 377 60.2
Sopen05g004860 Solanum pennellii HOM05D006037 ORTHO05D007384 4.5e-129 465.3 381 59.1
COL.COLO4_38215 Corchorus olitorius HOM05D006037 ORTHO05D007384 1.0e-128 464.2 323 68.7
AUR62002838 Chenopodium quinoa HOM05D006037 ORTHO05D007384 1.3e-128 463.8 328 68.3
ECA246G3707 Erigeron canadensis HOM05D006037 ORTHO05D007384 1.3e-128 463.8 371 60.4
Nitab4.5_0005528g0030 Nicotiana tabacum HOM05D006037 ORTHO05D007384 1.7e-128 463.4 401 57.9
A09p39240 Brassica napus HOM05D006037 ORTHO05D007384 2.9e-128 462.6 379 60.2
BraA09t39423Z Brassica rapa HOM05D006037 ORTHO05D007384 2.9e-128 462.6 379 60.2
vmacro10580 Vaccinium macrocarpon HOM05D006037 ORTHO05D007384 5.0e-128 461.8 409 57.9
DCAR_007255 Daucus carota HOM05D006037 ORTHO05D007384 1.9e-127 459.9 380 58.2
Eucgr.B02995 Eucalyptus grandis HOM05D006037 ORTHO05D007384 2.5e-127 459.5 333 64.0
BolC5t31246H Brassica oleracea HOM05D006037 ORTHO05D007384 7.2e-127 458.0 379 59.6
Lsat_1_v5_gn_3_57741 Lactuca sativa HOM05D006037 ORTHO05D007384 2.1e-126 456.4 352 59.4
HanXRQChr17g0551931 Helianthus annuus HOM05D006037 ORTHO05D007384 6.1e-126 454.9 333 64.0
Solyc05g009140.3 Solanum lycopersicum HOM05D006037 ORTHO05D007384 8.9e-125 451.1 334 63.8
Zm00001eb125200 Zea mays HOM05D006037 ORTHO05D007384 3.4e-124 449.1 385 55.1
Peaxi162Scf00753g00122 Petunia axillaris HOM05D006037 ORTHO05D007384 4.9e-123 445.3 324 65.1
CDE12G0065 Ceratophyllum demersum HOM05D006037 ORTHO05D007384 7.0e-122 441.4 376 55.6
Actinidia14911 Actinidia chinensis HOM05D006037 ORTHO05D007384 3.5e-121 439.1 386 58.0
Os01g0133500 Oryza sativa ssp. japonica HOM05D006037 ORTHO05D007384 1.6e-118 430.3 346 56.9
TAR622G1402 Trochodendron aralioides HOM05D006037 ORTHO05D007384 2.1e-118 429.9 282 70.9
unitig_747.g21203 Utricularia gibba HOM05D006037 ORTHO05D007384 3.6e-118 429.1 333 61.6
ATR1125G090 Amborella trichopoda HOM05D006037 ORTHO05D007384 8.0e-118 427.9 324 62.7
Migut.L01043 Erythranthe guttata HOM05D006037 ORTHO05D007384 5.4e-114 415.2 334 60.5
Cpa.g.sc65.52 Carica papaya HOM05D006037 ORTHO05D007384 1.2e-110 404.1 375 54.1
Lj3C1012T17 Lonicera japonica HOM05D006037 ORTHO05D007384 3.2e-106 389.4 380 53.4
Aa31LG7G9130 Aethionema arabicum HOM05D006037 ORTHO05D007384 1.3e-104 384.0 349 53.6
BcaC05g26470 Brassica carinata HOM05D006037 ORTHO05D007384 1.3e-104 384.0 377 53.6
TWI31G0909 Tripterygium wilfordii HOM05D006037 ORTHO05D007384 8.6e-104 381.3 374 52.9
Mapoly0042s0034 Marchantia polymorpha HOM05D006037 ORTHO05D007384 8.4e-91 338.2 354 47.7
AagrBONN_evm.TU.Sc2ySwM_117.146 Anthoceros agrestis HOM05D006037 ORTHO05D007384 6.9e-85 318.5 370 43.2
SMO164G0020 Selaginella moellendorffii HOM05D006037 ORTHO05D007384 9.9e-84 314.7 298 49.0
HPP92_008271 Vanilla planifolia HOM05D006037 ORTHO05D007384 2.4e-82 310.1 220 64.1
RcHm_v2.0_Chr5g0042931 Rosa chinensis HOM05D006037 ORTHO05D007384 5.4e-82 308.9 282 55.0
RcHm_v2.0_Chr7g0243441 Rosa chinensis HOM05D006037 ORTHO05D007384 5.4e-82 308.9 282 55.0
Pp3c15_25940 Physcomitrium patens HOM05D006037 ORTHO05D007384 7.1e-82 308.5 328 48.2
RcHm_v2.0_Chr6g0261541 Rosa chinensis HOM05D006037 ORTHO05D007384 4.5e-76 289.3 266 54.5
BcaC05g26471 Brassica carinata HOM05D006037 ORTHO05D007384 7.9e-73 278.5 272 52.2
Ah.02g127690 Amaranthus hybridus HOM05D006037 ORTHO05D007384 2.3e-72 276.9 372 41.7
QL01p040421 Quercus lobata HOM05D006037 ORTHO05D007384 9.6e-71 271.6 317 45.4
CARHR026110 Cardamine hirsuta HOM05D006037 ORTHO05D007384 2.1e-70 270.4 214 62.6
PGSC0003DMG401014554 Solanum tuberosum HOM05D006037 ORTHO05D007384 2.4e-69 266.9 213 61.0
Dinv21054 Davidia involucrata HOM05D006037 ORTHO05D007384 8.4e-67 258.5 188 65.4
CBR_g162 Chara braunii HOM05D006037 ORTHO05D007384 1.6e-57 227.6 374 36.1
QL01p040434 Quercus lobata HOM05D006037 ORTHO05D007384 2.5e-55 220.3 159 66.0
FAN07G1837 Fragaria x ananassa HOM05D006037 ORTHO05D007384 1.3e-54 218.0 155 67.7
Hma1.2p1_1024F.1_g249220 Hydrangea macrophylla HOM05D006037 ORTHO05D007384 2.1e-33 147.5 85 77.6
QL02p008285 Quercus lobata HOM05D000178 ORTHO05D007384 2.7e-33 147.1 180 41.7
Oeu054976.1 Olea europaea HOM05D006037 ORTHO05D007384 4.7e-25 119.8 76 67.1
Hma1.2p1_1024F.1_g249230 Hydrangea macrophylla HOM05D006037 ORTHO05D007384 2.2e-22 110.9 88 64.8
QL02p008150 Quercus lobata HOM05D006037 ORTHO05D007384 1.1e-21 108.6 92 55.4
QL02p008246 Quercus lobata HOM05D006037 ORTHO05D007384 3.1e-21 107.1 92 54.3
SEGI_35277 Sequoiadendron giganteum HOM05D006037 ORTHO05D007384 2.9e-19 100.5 80 53.8
RcHm_v2.0_Chr2g0108931 Rosa chinensis HOM05D006037 ORTHO05D007384 1.2e-15 88.6 75 56.0
SEGI_36031 Sequoiadendron giganteum HOM05D006037 ORTHO05D007384 4.8e-14 83.2 102 44.1
CSS0004694 Camellia sinensis var. sinensis HOM05D006037 ORTHO05D007384 8.3e-14 82.4 51 70.6
CSS0019302 Camellia sinensis var. sinensis HOM05D006037 ORTHO05D007384 1.4e-13 81.6 51 70.6
QL02p008273 Quercus lobata HOM05D006037 ORTHO05D007384 5.4e-13 79.7 39 87.2
HPP92_008272 Vanilla planifolia HOM05D006037 ORTHO05D007384 5.4e-13 79.7 100 43.0
CSS0047987 Camellia sinensis var. sinensis HOM05D006037 ORTHO05D007384 1.2e-12 78.6 51 70.6
CSS0027478 Camellia sinensis var. sinensis HOM05D006037 ORTHO05D007384 2.0e-12 77.8 51 66.7
CSS0028236 Camellia sinensis var. sinensis HOM05D006037 ORTHO05D007384 2.0e-12 77.8 51 66.7
PRCOL_00001454 Prasinoderma coloniale HOM05D020990 ORTHO05D028642 3.6e-09 67.0 257 26.1
Lsat_1_v5_gn_7_98681 Lactuca sativa HOM05D006037 ORTHO05D007384 6.1e-09 66.2 76 42.1
QL02p008170 Quercus lobata HOM05D006037 ORTHO05D007384 7.5e-07 59.3 101 36.6


User provided reference genes

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