Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc11g0003400 Simmondsia chinensis HOM05D004567 ORTHO05D005726 1.3e-309 1065.4 524 100.0
AUR62017692 Chenopodium quinoa HOM05D004567 ORTHO05D005726 1.7e-203 713.0 568 64.6
EL10Ac9g22943 Beta vulgaris HOM05D004567 ORTHO05D005726 4.6e-201 704.9 554 65.9
Ah.01g012240 Amaranthus hybridus HOM05D004567 ORTHO05D005726 8.7e-200 700.7 540 65.7
Gorai.012G133500 Gossypium raimondii HOM05D004567 ORTHO05D005726 3.7e-182 642.1 545 60.2
Gohir.D04G147500 Gossypium hirsutum HOM05D004567 ORTHO05D005726 1.1e-181 640.6 545 60.0
AUR62015228 Chenopodium quinoa HOM05D004567 ORTHO05D005726 4.1e-181 638.6 538 62.1
Gohir.A04G107700 Gossypium hirsutum HOM05D004567 ORTHO05D005726 1.2e-180 637.1 545 59.6
Hma1.2p1_1513F.1_g288000 Hydrangea macrophylla HOM05D004567 ORTHO05D005726 4.5e-180 635.2 556 57.7
Actinidia11176 Actinidia chinensis HOM05D004567 ORTHO05D005726 1.3e-179 633.6 558 59.0
Cfa022165 Carpinus fangiana HOM05D004567 ORTHO05D005726 6.5e-179 631.3 544 58.8
Duzib132G0874 Durio zibethinus HOM05D004567 ORTHO05D005726 1.1e-178 630.6 546 59.5
TWI74G0160 Tripterygium wilfordii HOM05D004567 ORTHO05D005726 1.1e-178 630.6 543 59.3
Atru.chr10.1157 Acer truncatum HOM05D004567 ORTHO05D005726 1.4e-178 630.2 539 61.0
TAR369G0463 Trochodendron aralioides HOM05D004567 ORTHO05D005726 2.5e-178 629.4 557 59.4
GSVIVG01012041001 Vitis vinifera HOM05D004567 ORTHO05D005726 9.4e-178 627.5 556 60.6
Thecc.02G160600 Theobroma cacao HOM05D004567 ORTHO05D005726 3.6e-177 625.5 548 59.1
Haze_02919 Corylus avellana HOM05D004567 ORTHO05D005726 8.2e-174 614.4 538 58.7
Potri.007G071000 Populus trichocarpa HOM05D004567 ORTHO05D005726 1.8e-173 613.2 539 58.4
TWI53G0531 Tripterygium wilfordii HOM05D004567 ORTHO05D005726 4.1e-173 612.1 559 57.1
Cc00_g04630 Coffea canephora HOM05D004567 ORTHO05D005726 2.0e-172 609.8 549 57.4
Ciclev10031151m.g Citrus clementina HOM05D004567 ORTHO05D005726 1.7e-171 606.7 548 58.8
Eucgr.J00860 Eucalyptus grandis HOM05D004567 ORTHO05D005726 1.7e-171 606.7 548 56.9
Sopen11g010070 Solanum pennellii HOM05D004567 ORTHO05D005726 2.9e-171 605.9 543 56.7
CANSAT25G2547 Cannabis sativa HOM05D004567 ORTHO05D005726 3.8e-171 605.5 551 57.7
Manes.11G065400 Manihot esculenta HOM05D004567 ORTHO05D005726 3.2e-170 602.4 537 58.5
Lj3g0010315 Lotus japonicus HOM05D004567 ORTHO05D005726 5.5e-170 601.7 541 56.6
Medtr8g009530 Medicago truncatula HOM05D004567 ORTHO05D005726 1.6e-169 600.1 536 57.1
Ca_23147_v3 Cicer arietinum L. HOM05D004567 ORTHO05D005726 3.6e-169 599.0 532 57.0
Gohir.D12G137700 Gossypium hirsutum HOM05D004567 ORTHO05D005726 3.6e-169 599.0 542 56.8
Sabra07G0059700 Salix brachista HOM05D004567 ORTHO05D005726 4.7e-169 598.6 532 57.3
MBI01_g01364_MAGBIO Magnolia biondii HOM05D004567 ORTHO05D005726 6.1e-169 598.2 563 56.8
MD07G1086800 Malus domestica HOM05D004567 ORTHO05D005726 7.9e-169 597.8 511 59.7
Manes.04G103500 Manihot esculenta HOM05D004567 ORTHO05D005726 1.0e-168 597.4 543 57.3
RcHm_v2.0_Chr1g0343571 Rosa chinensis HOM05D004567 ORTHO05D005726 1.8e-168 596.7 510 59.0
QL04p025799 Quercus lobata HOM05D004567 ORTHO05D005726 2.3e-168 596.3 546 55.7
Gorai.008G149200 Gossypium raimondii HOM05D004567 ORTHO05D005726 6.7e-168 594.7 544 56.8
FAN10G2749 Fragaria x ananassa HOM05D004567 ORTHO05D005726 8.8e-168 594.3 508 59.4
FvH4_7g08600 Fragaria vesca HOM05D004567 ORTHO05D005726 1.1e-167 594.0 506 59.9
Prupe.2G113700 Prunus persica HOM05D004567 ORTHO05D005726 1.1e-167 594.0 523 58.3
Oeu037755.1 Olea europaea HOM05D004567 ORTHO05D005726 1.5e-167 593.6 549 56.5
PSO063G1783 Papaver somniferum HOM05D004567 ORTHO05D005726 2.6e-167 592.8 558 57.5
PSO832G3127 Papaver somniferum HOM05D004567 ORTHO05D005726 5.7e-167 591.7 555 57.7
FAN03G0634 Fragaria x ananassa HOM05D004567 ORTHO05D005726 9.7e-167 590.9 508 59.4
FAN06G1075 Fragaria x ananassa HOM05D004567 ORTHO05D005726 9.7e-167 590.9 506 59.7
Lalb_Chr13g0290871 Lupinus albus HOM05D004567 ORTHO05D005726 3.7e-166 589.0 554 55.4
Psat4g218760 Pisum sativum HOM05D004567 ORTHO05D005726 3.7e-166 589.0 535 56.1
FAN01G2992 Fragaria x ananassa HOM05D004567 ORTHO05D005726 1.8e-165 586.6 508 59.4
FAN10G3814 Fragaria x ananassa HOM05D004567 ORTHO05D005726 4.1e-165 585.5 508 59.4
Nn4g22147 Nelumbo nucifera HOM05D004567 ORTHO05D005726 5.3e-165 585.1 554 56.9
Aqoxy7G00425 Aquilegia oxysepala HOM05D004567 ORTHO05D005726 7.0e-165 584.7 581 54.2
Peaxi162Scf01013g00124 Petunia axillaris HOM05D004567 ORTHO05D005726 2.6e-164 582.8 535 56.4
VMungo0331G0285 Vigna mungo HOM05D004567 ORTHO05D005726 2.6e-164 582.8 547 55.9
MD02G1226800 Malus domestica HOM05D004567 ORTHO05D005726 4.5e-164 582.0 512 58.4
CSS0021756 Camellia sinensis var. sinensis HOM05D004567 ORTHO05D005726 5.9e-164 581.6 567 55.9
Phvul.010G040700 Phaseolus vulgaris HOM05D004567 ORTHO05D005726 5.9e-164 581.6 549 56.3
Glyma.07G121300 Glycine max HOM05D004567 ORTHO05D005726 7.7e-164 581.3 555 55.1
TPR.G17362 Trifolium pratense HOM05D004567 ORTHO05D005726 2.2e-163 579.7 537 56.2
AT1G50120 Arabidopsis thaliana HOM05D004567 ORTHO05D005726 5.0e-163 578.6 543 55.6
Migut.N03351 Erythranthe guttata HOM05D004567 ORTHO05D005726 8.5e-163 577.8 545 56.0
Sed0017461 Sechium edule HOM05D004567 ORTHO05D005726 8.5e-163 577.8 543 55.2
Dinv41785 Davidia involucrata HOM05D004567 ORTHO05D005726 1.1e-162 577.4 515 60.0
AL1G57750 Arabidopsis lyrata HOM05D004567 ORTHO05D005726 2.5e-162 576.2 543 55.6
CsaV3_4G009100 Cucumis sativus L. HOM05D004567 ORTHO05D005726 3.2e-162 575.9 540 55.7
CiPaw.14G015900 Carya illinoinensis HOM05D004567 ORTHO05D005726 2.7e-161 572.8 498 57.8
SGA_v2.0_scaffold24G10556 Striga asiatica HOM05D004567 ORTHO05D005726 4.7e-161 572.0 548 55.3
DCAR_011423 Daucus carota HOM05D004567 ORTHO05D005726 8.0e-161 571.2 542 55.2
arahy.Tifrunner.gnm1.ann1.JL30IG Arachis hypogaea HOM05D004567 ORTHO05D005726 5.2e-160 568.5 549 55.0
arahy.Tifrunner.gnm1.ann1.2EVD6N Arachis hypogaea HOM05D004567 ORTHO05D005726 8.8e-160 567.8 549 55.0
SalBow7G4790 Salvia bowleyana HOM05D004567 ORTHO05D005726 4.4e-159 565.5 553 53.9
THA.LOC104815215 Tarenaya hassleriana HOM05D004567 ORTHO05D005726 1.3e-158 563.9 540 55.4
CARHR040180 Cardamine hirsuta HOM05D004567 ORTHO05D005726 4.1e-157 558.9 542 54.1
Sp1g37000 Schrenkiella parvula HOM05D004567 ORTHO05D005726 1.7e-155 553.5 539 54.2
PSO339G1936 Papaver somniferum HOM05D004567 ORTHO05D005726 2.2e-155 553.1 557 54.2
Lsat_1_v5_gn_5_37660 Lactuca sativa HOM05D004567 ORTHO05D005726 3.8e-155 552.4 538 54.5
Carub.0001s3927 Capsella rubella HOM05D004567 ORTHO05D005726 5.0e-155 552.0 538 53.7
Thhalv10011376m.g Eutrema salsugineum HOM05D004567 ORTHO05D005726 5.0e-155 552.0 543 53.8
vmacro12414 Vaccinium macrocarpon HOM05D004567 ORTHO05D005726 4.7e-153 545.4 696 46.3
ECA246G0539 Erigeron canadensis HOM05D004567 ORTHO05D005726 4.0e-152 542.3 551 52.3
BolC3t21263H Brassica oleracea HOM05D004567 ORTHO05D005726 2.0e-151 540.0 542 53.7
Gohir.A12G134100 Gossypium hirsutum HOM05D004567 ORTHO05D005726 2.0e-151 540.0 542 52.8
A08p03320 Brassica napus HOM05D004567 ORTHO05D005726 3.4e-151 539.3 539 53.6
BcaB04g17271 Brassica carinata HOM05D004567 ORTHO05D005726 5.7e-151 538.5 544 53.1
C03p89490 Brassica napus HOM05D004567 ORTHO05D005726 9.8e-151 537.7 542 53.5
Aa31LG10G4020 Aethionema arabicum HOM05D004567 ORTHO05D005726 3.7e-150 535.8 572 51.4
BolC6t35627H Brassica oleracea HOM05D004567 ORTHO05D005726 2.4e-149 533.1 541 52.3
BraA06t23544Z Brassica rapa HOM05D004567 ORTHO05D005726 2.4e-149 533.1 541 52.3
HanXRQChr12g0379741 Helianthus annuus HOM05D004567 ORTHO05D005726 2.4e-149 533.1 540 53.9
Solyc11g019960.2 Solanum lycopersicum HOM05D004567 ORTHO05D005726 1.6e-148 530.4 499 54.3
Glyma.03G102500 Glycine max HOM05D004567 ORTHO05D005726 2.0e-148 530.0 552 52.9
BcaC08g43196 Brassica carinata HOM05D004567 ORTHO05D005726 1.0e-147 527.7 541 51.9
Lj7A481G48 Lonicera japonica HOM05D004567 ORTHO05D005726 1.3e-147 527.3 561 53.8
C06p05010 Brassica napus HOM05D004567 ORTHO05D005726 1.7e-147 526.9 541 52.1
ATR0605G273 Amborella trichopoda HOM05D004567 ORTHO05D005726 2.9e-147 526.2 576 49.5
BraA08t32365Z Brassica rapa HOM05D004567 ORTHO05D005726 4.2e-146 522.3 584 49.8
BcaB07g33468 Brassica carinata HOM05D004567 ORTHO05D005726 5.5e-146 521.9 535 53.3
A06p03360 Brassica napus HOM05D004567 ORTHO05D005726 3.0e-144 516.2 550 51.5
CAN.G2.11 Capsicum annuum HOM05D004567 ORTHO05D005726 1.0e-139 501.1 436 58.3
Duzib052G0538 Durio zibethinus HOM05D004567 ORTHO05D005726 9.5e-138 494.6 531 52.7
Hund24369 Selenicereus undatus HOM05D004567 ORTHO05D005726 1.2e-137 494.2 349 71.9
Nitab4.5_0000167g0100 Nicotiana tabacum HOM05D004567 ORTHO05D005726 6.1e-137 491.9 412 60.2
HPP92_002998 Vanilla planifolia HOM05D004567 ORTHO05D005726 3.5e-132 476.1 525 50.5
CDE02G2175 Ceratophyllum demersum HOM05D004567 ORTHO05D005726 6.6e-131 471.9 484 52.7
Nn3g16289 Nelumbo nucifera HOM05D004567 ORTHO05D005726 1.5e-130 470.7 461 55.7
Rhsim06G0125800 Rhododendron simsii HOM05D004567 ORTHO05D005726 1.9e-125 453.8 704 42.2
CDE08G0826 Ceratophyllum demersum HOM05D004567 ORTHO05D005726 7.0e-125 451.8 523 49.5
PGSC0003DMG401027620 Solanum tuberosum HOM05D004567 ORTHO05D005726 2.6e-103 380.2 310 61.3
Cpa.g.sc0.161 Carica papaya HOM05D004567 ORTHO05D005726 9.9e-103 378.3 344 58.7
Nitab4.5_0004158g0010 Nicotiana tabacum HOM05D004567 ORTHO05D005726 3.3e-98 363.2 323 58.5
Oeu029993.1 Olea europaea HOM05D004567 ORTHO05D005726 9.6e-98 361.7 338 57.1
A06p03590 Brassica napus HOM05D004567 ORTHO05D005726 1.3e-91 341.3 313 58.5
Mapoly0026s0045 Marchantia polymorpha HOM05D004567 ORTHO05D005726 1.8e-91 340.9 530 37.9
MELO3C018973.2 Cucumis melo HOM05D004567 ORTHO05D005726 8.7e-91 338.6 393 48.3
Os06g0618600 Oryza sativa ssp. japonica HOM05D004567 ORTHO05D005726 5.3e-88 329.3 359 52.4
Pp3c23_19720 Physcomitrium patens HOM05D004567 ORTHO05D005726 1.1e-85 321.6 533 37.5
SMO367G1304 Selaginella moellendorffii HOM05D004567 ORTHO05D005726 4.6e-84 316.2 508 36.8
unitig_578.g16282 Utricularia gibba HOM05D004567 ORTHO05D005726 3.3e-82 310.1 344 51.5
Pp3c20_6950 Physcomitrium patens HOM05D004567 ORTHO05D005726 1.1e-80 305.1 515 38.6
Zm00001eb066810 Zea mays HOM05D004567 ORTHO05D005726 1.9e-77 294.3 394 46.2
AagrBONN_evm.TU.Sc2ySwM_228.3324 Anthoceros agrestis HOM05D004567 ORTHO05D005726 2.5e-77 293.9 532 35.3
SEGI_15833 Sequoiadendron giganteum HOM05D004567 ORTHO05D005726 3.5e-76 290.0 325 49.2
ClCG10G008360 Citrullus lanatus HOM05D004567 ORTHO05D005726 1.4e-64 251.5 337 44.8
BraA06t23566Z Brassica rapa HOM05D004567 ORTHO05D005726 8.2e-57 225.7 147 72.1
Nitab4.5_0004158g0020 Nicotiana tabacum HOM05D004567 ORTHO05D005726 2.4e-56 224.2 201 54.7
Cfa022169 Carpinus fangiana HOM05D004567 ORTHO05D005726 7.2e-53 212.6 132 73.5
Oeu029992.1 Olea europaea HOM05D004567 ORTHO05D005726 6.1e-52 209.5 148 68.2
PGSC0003DMG402027620 Solanum tuberosum HOM05D004567 ORTHO05D005726 1.8e-51 208.0 180 54.4
C06p05100 Brassica napus HOM05D004567 ORTHO05D005726 3.9e-51 206.8 167 61.7
Duzib248G1520 Durio zibethinus HOM05D004567 ORTHO05D005726 8.8e-51 205.7 134 72.4
unitig_44.g31559 Utricularia gibba HOM05D004567 ORTHO05D005726 1.5e-50 204.9 144 68.1
Oeu029994.1 Olea europaea HOM05D004567 ORTHO05D005726 2.2e-41 174.5 228 45.2
ClCG10G008380 Citrullus lanatus HOM05D004567 ORTHO05D005726 1.6e-39 168.3 100 75.0
CBR_g8998 Chara braunii HOM05D004567 ORTHO05D005726 2.7e-36 157.5 501 26.7
Rhsim06G0125500 Rhododendron simsii HOM05D004567 ORTHO05D005726 5.9e-31 139.8 88 76.1
ClCG10G008350 Citrullus lanatus HOM05D004567 ORTHO05D005726 3.0e-27 127.5 125 55.2
unitig_578.g16281 Utricularia gibba HOM05D004567 ORTHO05D005726 2.7e-23 114.4 140 41.4
Rhsim04G0129600 Rhododendron simsii HOM05D004567 ORTHO05D005726 6.6e-22 109.8 99 56.6
Sed0015165 Sechium edule HOM05D004567 ORTHO05D005726 1.1e-21 109.0 125 48.0
Actinidia24396 Actinidia chinensis HOM05D004567 ORTHO05D005726 1.8e-19 101.7 109 48.6
Cpa.g.sc0.162 Carica papaya HOM05D004567 ORTHO05D005726 3.0e-19 100.9 108 50.0
FAN11G1323 Fragaria x ananassa HOM05D004567 ORTHO05D005726 2.0e-18 98.2 74 59.5
Rhsim06G0125400 Rhododendron simsii HOM05D004567 ORTHO05D005726 5.8e-18 96.7 53 77.4
Rhsim06G0125600 Rhododendron simsii HOM05D004567 ORTHO05D005726 3.5e-15 87.4 76 56.6
SHI31088 Sapria himalayana HOM05D004567 ORTHO05D005726 3.0e-14 84.3 100 45.0
QL01p003984 Quercus lobata HOM05D004567 ORTHO05D000318 8.9e-11 72.8 73 47.9
SEGI_26710 Sequoiadendron giganteum HOM05D004567 ORTHO05D005726 1.2e-10 72.4 80 41.2
Rhsim04G0129400 Rhododendron simsii HOM05D004567 ORTHO05D005726 2.0e-10 71.6 86 45.3
Sed0023875 Sechium edule HOM05D004567 ORTHO05D005726 3.4e-10 70.9 115 39.1
TAR623G0420 Trochodendron aralioides HOM05D004567 ORTHO05D037809 2.4e-08 64.7 131 37.4
MCO07G406 Micromonas commoda HOM05D004567 ORTHO05D005726 1.0e-06 59.3 515 23.5


User provided reference genes

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