Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc11g0003170 Simmondsia chinensis HOM05D007389 ORTHO05D009400 3.8e-205 718.0 379 100.0
GSVIVG01011940001 Vitis vinifera HOM05D007389 ORTHO05D009400 3.8e-120 435.6 379 59.9
Hund25095 Selenicereus undatus HOM05D007389 ORTHO05D009400 1.0e-117 427.6 378 61.1
Rhsim09G0111300 Rhododendron simsii HOM05D007389 ORTHO05D009400 3.3e-116 422.5 379 58.0
CSS0047863 Camellia sinensis var. sinensis HOM05D007389 ORTHO05D009400 5.6e-116 421.8 365 60.0
Actinidia16624 Actinidia chinensis HOM05D007389 ORTHO05D009400 7.4e-116 421.4 380 57.9
Hma1.2p1_0406F.1_g146090 Hydrangea macrophylla HOM05D007389 ORTHO05D009400 1.8e-114 416.8 377 59.2
Potri.010G128700 Populus trichocarpa HOM05D007389 ORTHO05D009400 2.4e-114 416.4 381 57.7
COL.COLO4_07880 Corchorus olitorius HOM05D007389 ORTHO05D009400 9.0e-114 414.5 371 58.2
FAN17G2097 Fragaria x ananassa HOM05D007389 ORTHO05D009400 1.2e-113 414.1 380 56.3
FvH4_4g27970 Fragaria vesca HOM05D007389 ORTHO05D009400 1.5e-113 413.7 380 56.1
vmacro10536 Vaccinium macrocarpon HOM05D007389 ORTHO05D009400 5.8e-113 411.8 366 59.0
Cfa018619 Carpinus fangiana HOM05D007389 ORTHO05D009400 7.6e-113 411.4 380 56.6
AUR62035272 Chenopodium quinoa HOM05D007389 ORTHO05D009400 7.6e-113 411.4 376 58.2
CSS0013871 Camellia sinensis var. sinensis HOM05D007389 ORTHO05D009400 2.5e-111 406.4 347 60.5
RcHm_v2.0_Chr4g0435681 Rosa chinensis HOM05D007389 ORTHO05D009400 5.5e-111 405.2 382 55.8
Gohir.D12G172800 Gossypium hirsutum HOM05D007389 ORTHO05D009400 1.2e-110 404.1 380 56.6
Sabra10G0097900 Salix brachista HOM05D007389 ORTHO05D009400 2.1e-110 403.3 381 56.2
Gorai.008G185300 Gossypium raimondii HOM05D007389 ORTHO05D009400 1.8e-109 400.2 380 55.8
Thecc.02G359800 Theobroma cacao HOM05D007389 ORTHO05D009400 1.8e-109 400.2 380 55.0
Gohir.A12G169500 Gossypium hirsutum HOM05D007389 ORTHO05D009400 3.9e-109 399.1 380 55.5
Ciclev10031830m.g Citrus clementina HOM05D007389 ORTHO05D009400 5.1e-109 398.7 381 55.9
Cc11_g10500 Coffea canephora HOM05D007389 ORTHO05D009400 8.7e-109 397.9 378 55.0
Prupe.1G306500 Prunus persica HOM05D007389 ORTHO05D009400 1.5e-108 397.1 381 55.1
ClCG05G022970 Citrullus lanatus HOM05D007389 ORTHO05D009400 2.5e-108 396.4 380 53.9
Nn4g23752 Nelumbo nucifera HOM05D007389 ORTHO05D009400 1.3e-107 394.0 379 55.1
Nitab4.5_0014175g0010 Nicotiana tabacum HOM05D007389 ORTHO05D009400 3.7e-107 392.5 380 52.6
CsaV3_5G034040 Cucumis sativus L. HOM05D007389 ORTHO05D009400 4.8e-107 392.1 380 53.4
Eucgr.B03042 Eucalyptus grandis HOM05D007389 ORTHO05D009400 5.3e-106 388.7 381 53.0
TAR371G0503 Trochodendron aralioides HOM05D007389 ORTHO05D009400 5.3e-106 388.7 353 57.5
TWI31G0236 Tripterygium wilfordii HOM05D007389 ORTHO05D009400 2.0e-105 386.7 380 54.2
MD13G1045500 Malus domestica HOM05D007389 ORTHO05D009400 4.5e-105 385.6 381 53.5
PGSC0003DMG400007468 Solanum tuberosum HOM05D007389 ORTHO05D009400 5.9e-105 385.2 380 52.6
Haze_17449 Corylus avellana HOM05D004993 ORTHO05D008532 1.0e-104 384.4 356 56.7
Manes.06G071400 Manihot esculenta HOM05D007389 ORTHO05D009400 2.9e-104 382.9 379 53.0
CiPaw.15G004300 Carya illinoinensis HOM05D007389 ORTHO05D009400 2.5e-103 379.8 363 56.2
Sopen04g002110 Solanum pennellii HOM05D007389 ORTHO05D009400 3.2e-103 379.4 380 51.6
ECA234G1470 Erigeron canadensis HOM05D007389 ORTHO05D009400 1.6e-102 377.1 379 53.8
PGR102G2947 Punica granatum HOM05D007389 ORTHO05D009400 2.1e-102 376.7 381 52.5
HanXRQChr16g0529211 Helianthus annuus HOM05D007389 ORTHO05D009400 1.0e-101 374.4 379 54.4
Sed0014526 Sechium edule HOM05D007389 ORTHO05D009400 1.0e-101 374.4 379 52.8
Phvul.003G028200 Phaseolus vulgaris HOM05D007389 ORTHO05D009400 1.4e-101 374.0 381 54.3
Nitab4.5_0000280g0020 Nicotiana tabacum HOM05D007389 ORTHO05D009400 1.9e-100 370.2 380 50.5
Peaxi162Scf00086g00615 Petunia axillaris HOM05D007389 ORTHO05D009400 2.5e-100 369.8 380 51.6
Nn3g17765 Nelumbo nucifera HOM05D007389 ORTHO05D009400 9.7e-100 367.9 379 52.2
Glyma.02G098600 Glycine max HOM05D007389 ORTHO05D009400 1.3e-99 367.5 380 54.2
Lalb_Chr10g0099831 Lupinus albus HOM05D007389 ORTHO05D009400 1.7e-99 367.1 378 52.1
SalBow8G0691 Salvia bowleyana HOM05D007389 ORTHO05D009400 8.2e-99 364.8 385 51.7
FAN22G0259 Fragaria x ananassa HOM05D007389 ORTHO05D009400 1.1e-98 364.4 338 57.1
SEGI_35624 Sequoiadendron giganteum HOM05D007389 ORTHO05D009400 4.1e-98 362.5 377 50.9
Lsat_1_v5_gn_4_20121 Lactuca sativa HOM05D007389 ORTHO05D009400 9.1e-98 361.3 382 53.7
ATR0681G192 Amborella trichopoda HOM05D007389 ORTHO05D009400 2.2e-96 356.7 365 50.7
Lj2g0025946 Lotus japonicus HOM05D007389 ORTHO05D009400 1.1e-95 354.4 386 52.1
MELO3C012220.2 Cucumis melo HOM05D007389 ORTHO05D009400 1.4e-95 354.0 371 51.8
VMungo1215G1613 Vigna mungo HOM05D007389 ORTHO05D009400 3.0e-93 346.3 360 54.2
Pp3c18_11800 Physcomitrium patens HOM05D007389 ORTHO05D009400 2.2e-91 340.1 377 48.3
THA.LOC104825707 Tarenaya hassleriana HOM05D007389 ORTHO05D009400 2.8e-91 339.7 382 48.4
SGA_v2.0_scaffold124G33583 Striga asiatica HOM05D007389 ORTHO05D009400 1.4e-90 337.4 379 46.7
Migut.E00312 Erythranthe guttata HOM05D007389 ORTHO05D009400 1.2e-89 334.3 379 49.6
EL10Ac6g14465 Beta vulgaris HOM05D007389 ORTHO05D009400 5.9e-89 332.0 475 42.9
Duzib268G0586 Durio zibethinus HOM05D007389 ORTHO05D009400 1.7e-88 330.5 320 54.4
Oeu042041.1 Olea europaea HOM05D007389 ORTHO05D009400 8.0e-86 321.6 301 55.1
Sp1g11820 Schrenkiella parvula HOM05D007389 ORTHO05D009400 8.8e-85 318.2 380 46.1
AagrBONN_evm.TU.Sc2ySwM_228.4489 Anthoceros agrestis HOM05D007389 ORTHO05D009400 2.6e-84 316.6 378 45.5
Lj3A1018T64 Lonicera japonica HOM05D007389 ORTHO05D009400 2.6e-84 316.6 363 49.3
Mapoly0108s0021 Marchantia polymorpha HOM05D007389 ORTHO05D009400 9.7e-84 314.7 381 45.7
Dinv21123 Davidia involucrata HOM05D007389 ORTHO05D009400 2.2e-83 313.5 263 62.4
CDE08G0863 Ceratophyllum demersum HOM05D007389 ORTHO05D009400 8.2e-83 311.6 381 45.1
BraA08t35158Z Brassica rapa HOM05D007389 ORTHO05D009400 2.0e-81 307.0 370 45.9
CDE02G3618 Ceratophyllum demersum HOM05D007389 ORTHO05D009400 1.0e-80 304.7 381 43.8
PSO063G2802 Papaver somniferum HOM05D007389 ORTHO05D009400 2.2e-80 303.5 383 48.0
Thhalv10009351m.g Eutrema salsugineum HOM05D007389 ORTHO05D009400 5.0e-80 302.4 371 45.8
A08p32350 Brassica napus HOM05D007389 ORTHO05D009400 8.5e-80 301.6 370 45.4
C08p16080 Brassica napus HOM05D007389 ORTHO05D009400 1.1e-79 301.2 372 45.7
BolC8t49230H Brassica oleracea HOM05D007389 ORTHO05D009400 4.2e-79 299.3 371 45.3
Pp3c15_5000 Physcomitrium patens HOM05D007389 ORTHO05D009400 7.2e-79 298.5 404 42.3
unitig_27.g25245 Utricularia gibba HOM05D007389 ORTHO05D009400 9.4e-79 298.1 364 44.8
QL01p044805 Quercus lobata HOM05D007389 ORTHO05D009400 6.1e-78 295.4 264 60.2
Carub.0001s1304 Capsella rubella HOM05D007389 ORTHO05D009400 4.0e-77 292.7 376 44.4
SMO361G0332 Selaginella moellendorffii HOM05D007389 ORTHO05D009400 4.0e-77 292.7 363 45.7
CARHR013690 Cardamine hirsuta HOM05D007389 ORTHO05D009400 2.0e-76 290.4 377 43.0
AT1G13310 Arabidopsis thaliana HOM05D007389 ORTHO05D009400 1.4e-74 284.3 369 42.8
AL1G25070 Arabidopsis lyrata HOM05D007389 ORTHO05D009400 4.5e-73 279.3 383 42.8
Cpa.g.sc1.212 Carica papaya HOM05D007389 ORTHO05D009400 1.0e-72 278.1 259 57.1
Aa31LG1G1460 Aethionema arabicum HOM05D007389 ORTHO05D009400 2.5e-71 273.5 371 44.7
AUR62002912 Chenopodium quinoa HOM05D007389 ORTHO05D009400 1.8e-66 257.3 376 41.8
AagrBONN_evm.TU.Sc2ySwM_362.2055 Anthoceros agrestis HOM05D007389 ORTHO05D009400 3.1e-66 256.5 260 53.1
HPP92_023813 Vanilla planifolia HOM05D007389 ORTHO05D009400 2.3e-61 240.4 381 39.1
HanXRQChr17g0567921 Helianthus annuus HOM05D007389 ORTHO05D009400 1.7e-59 234.2 258 47.7
Actinidia14859 Actinidia chinensis HOM05D007389 ORTHO05D009400 2.8e-59 233.4 240 54.2
Thhalv10023040m.g Eutrema salsugineum HOM05D007389 ORTHO05D009400 2.0e-57 227.3 381 37.5
BcaC06g31117 Brassica carinata HOM05D007389 ORTHO05D009400 8.6e-48 195.3 368 35.9
CBR_g39725 Chara braunii HOM05D001740 ORTHO05D001468 4.3e-47 193.0 261 42.5
A06p42500 Brassica napus HOM05D001825 ORTHO05D002336 5.8e-44 182.6 368 34.0
BraA06t27163Z Brassica rapa HOM05D001825 ORTHO05D002336 2.2e-43 180.6 366 33.9
FAN12G3113 Fragaria x ananassa HOM05D007389 ORTHO05D009400 1.7e-35 154.5 133 58.6
Duzib251G0237 Durio zibethinus HOM05D007389 ORTHO05D009400 2.9e-35 153.7 143 57.3
BcaC06g33956 Brassica carinata HOM05D007389 ORTHO05D009400 5.4e-34 149.4 369 31.4
BolC7t44001H Brassica oleracea HOM05D001825 ORTHO05D002336 1.2e-30 138.3 315 33.3
C07p34700 Brassica napus HOM05D001825 ORTHO05D002336 2.4e-29 134.0 311 33.1
QL01p044810 Quercus lobata HOM05D007389 ORTHO05D009400 5.8e-28 129.4 116 50.9
PSO782G3111 Papaver somniferum HOM05D007389 ORTHO05D009400 1.3e-27 128.3 169 41.4
SalBow8G3546 Salvia bowleyana HOM05D004993 ORTHO05D008532 3.8e-27 126.7 205 37.1
Lalb_Chr04g0254881 Lupinus albus HOM05D007389 ORTHO05D009400 1.9e-23 114.4 114 47.4
Nitab4.5_0000280g0130 Nicotiana tabacum HOM05D007389 ORTHO05D009400 7.3e-23 112.5 145 44.8
TAR629G0747 Trochodendron aralioides HOM05D007389 ORTHO05D009400 6.4e-19 99.4 151 43.0
SalBow8G3870 Salvia bowleyana HOM05D007389 ORTHO05D009400 5.4e-18 96.3 99 51.5
MCO11G211 Micromonas commoda HOM05D007389 ORTHO05D009400 6.0e-17 92.8 431 23.4
TAR573G0003 Trochodendron aralioides HOM05D007389 ORTHO05D009400 1.0e-16 92.0 114 50.0


User provided reference genes

Program Settings