Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc11g0003120 Simmondsia chinensis HOM05D004872 ORTHO05D006050 8.8e-50 200.3 125 100.0
Sc11g0003110 Simmondsia chinensis HOM05D004872 ORTHO05D006050 7.7e-46 187.2 119 99.2
RcHm_v2.0_Chr5g0046151 Rosa chinensis HOM05D004872 ORTHO05D006050 2.9e-24 115.5 102 64.7
Cpa.g.sc34.184 Carica papaya HOM05D004872 ORTHO05D006050 3.7e-24 115.2 99 64.6
FAN25G2824 Fragaria x ananassa HOM05D004872 ORTHO05D006050 4.9e-24 114.8 102 64.7
Dinv22205 Davidia involucrata HOM05D004872 ORTHO05D006050 4.1e-23 111.7 100 62.0
FvH4_3g25170 Fragaria vesca HOM05D004872 ORTHO05D006050 4.1e-23 111.7 102 63.7
FAN11G3172 Fragaria x ananassa HOM05D004872 ORTHO05D006050 4.1e-23 111.7 102 63.7
Duzib150G1163 Durio zibethinus HOM05D004872 ORTHO05D006050 7.0e-23 110.9 100 61.0
Thecc.09G254600 Theobroma cacao HOM05D004872 ORTHO05D006050 9.2e-23 110.5 100 62.0
Manes.09G068000 Manihot esculenta HOM05D004872 ORTHO05D006050 1.6e-22 109.8 102 60.8
CiPaw.13G148000 Carya illinoinensis HOM05D004872 ORTHO05D006050 2.0e-22 109.4 102 57.8
Cfa009914 Carpinus fangiana HOM05D004872 ORTHO05D006050 1.0e-21 107.1 119 63.0
SGA_v2.0_scaffold144G35815 Striga asiatica HOM05D004872 ORTHO05D006050 2.3e-21 105.9 104 58.7
THA.LOC104816943 Tarenaya hassleriana HOM05D004872 ORTHO05D006050 3.0e-21 105.5 98 57.1
Gohir.A09G108400 Gossypium hirsutum HOM05D004872 ORTHO05D006050 6.6e-21 104.4 120 65.0
Peaxi162Scf00025g02826 Petunia axillaris HOM05D004872 ORTHO05D006050 1.1e-20 103.6 119 63.0
Prupe.4G268800 Prunus persica HOM05D004872 ORTHO05D006050 1.1e-20 103.6 98 58.2
Prupe.7G012800 Prunus persica HOM05D004872 ORTHO05D006050 1.1e-20 103.6 98 58.2
arahy.Tifrunner.gnm1.ann1.U00P2R Arachis hypogaea HOM05D004872 ORTHO05D006050 1.5e-20 103.2 99 57.6
CSS0006428 Camellia sinensis var. sinensis HOM05D004872 ORTHO05D006050 1.9e-20 102.8 102 54.9
Lj6g0009628 Lotus japonicus HOM05D004872 ORTHO05D006050 1.9e-20 102.8 102 55.9
Lj6g0013181 Lotus japonicus HOM05D004872 ORTHO05D006050 1.9e-20 102.8 102 55.9
MSTRG.1742 Avicennia marina HOM05D004872 ORTHO05D006050 2.5e-20 102.4 100 57.0
CiPaw.13G148200 Carya illinoinensis HOM05D004872 ORTHO05D006050 2.5e-20 102.4 104 52.9
AUR62000220 Chenopodium quinoa HOM05D004872 ORTHO05D006050 2.5e-20 102.4 119 62.2
CiPaw.14G110500 Carya illinoinensis HOM05D004872 ORTHO05D006050 3.3e-20 102.1 95 57.9
Nn8g39701 Nelumbo nucifera HOM05D004872 ORTHO05D006050 3.3e-20 102.1 100 58.0
Manes.08G069866 Manihot esculenta HOM05D004872 ORTHO05D006050 4.3e-20 101.7 100 59.0
Nn2g15815 Nelumbo nucifera HOM05D004872 ORTHO05D006050 4.3e-20 101.7 100 58.0
Haze_23271 Corylus avellana HOM05D004500 ORTHO05D005775 5.6e-20 101.3 119 60.5
Atru.chr4.2930 Acer truncatum HOM05D004872 ORTHO05D006050 7.3e-20 100.9 119 54.6
arahy.Tifrunner.gnm1.ann1.EX2XSN Arachis hypogaea HOM05D004872 ORTHO05D006050 7.3e-20 100.9 99 55.6
Lsat_1_v5_gn_8_24740 Lactuca sativa HOM05D004872 ORTHO05D006050 7.3e-20 100.9 85 63.5
Sabra13G0065000 Salix brachista HOM05D004872 ORTHO05D006050 9.5e-20 100.5 106 59.4
Lsat_1_v5_gn_3_110040 Lactuca sativa HOM05D004872 ORTHO05D006050 1.2e-19 100.1 85 62.4
Potri.013G075500 Populus trichocarpa HOM05D004872 ORTHO05D006050 2.1e-19 99.4 102 61.8
GSVIVG01037356001 Vitis vinifera HOM05D004872 ORTHO05D006050 2.1e-19 99.4 95 58.9
Gohir.D09G105300 Gossypium hirsutum HOM05D004872 ORTHO05D006050 2.8e-19 99.0 101 59.4
Ah.04g159640 Amaranthus hybridus HOM05D004872 ORTHO05D006050 3.6e-19 98.6 103 55.3
ECA233G5422 Erigeron canadensis HOM05D004872 ORTHO05D006050 4.7e-19 98.2 84 63.1
Gorai.006G122300 Gossypium raimondii HOM05D004872 ORTHO05D006050 8.0e-19 97.4 101 58.4
arahy.Tifrunner.gnm1.ann1.K1U5S9 Arachis hypogaea HOM05D004872 ORTHO05D006050 1.1e-18 97.1 99 53.5
CAN.G1549.27 Capsicum annuum HOM05D004872 ORTHO05D006050 1.1e-18 97.1 104 55.8
DCAR_030961 Daucus carota HOM05D004872 ORTHO05D006050 1.1e-18 97.1 103 56.3
Cc11_g04500 Coffea canephora HOM05D004872 ORTHO05D006050 1.4e-18 96.7 88 59.1
arahy.Tifrunner.gnm1.ann1.R4J47E Arachis hypogaea HOM05D004872 ORTHO05D006050 1.8e-18 96.3 101 54.5
AUR62006565 Chenopodium quinoa HOM05D004872 ORTHO05D006050 1.8e-18 96.3 78 66.7
COL.COLO4_24934 Corchorus olitorius HOM05D004872 ORTHO05D006050 1.8e-18 96.3 97 56.7
BolC4t23202H Brassica oleracea HOM05D004872 ORTHO05D006050 3.1e-18 95.5 101 57.4
MD12G1010900 Malus domestica HOM05D004872 ORTHO05D006050 3.1e-18 95.5 99 53.5
Actinidia06989 Actinidia chinensis HOM05D004500 ORTHO05D005775 5.2e-18 94.7 70 68.6
Thhalv10019047m.g Eutrema salsugineum HOM05D004872 ORTHO05D006050 5.2e-18 94.7 99 59.6
ECA236G0590 Erigeron canadensis HOM05D004872 ORTHO05D006050 6.8e-18 94.4 84 61.9
HanXRQChr10g0315331 Helianthus annuus HOM05D004872 ORTHO05D006050 6.8e-18 94.4 91 60.4
PGSC0003DMG400003977 Solanum tuberosum HOM05D004872 ORTHO05D006050 6.8e-18 94.4 104 54.8
TAR633G0253 Trochodendron aralioides HOM05D004872 ORTHO05D006050 6.8e-18 94.4 102 55.9
Nitab4.5_0002138g0010 Nicotiana tabacum HOM05D004872 ORTHO05D006050 8.9e-18 94.0 119 58.8
Glyma.08G136100 Glycine max HOM05D004872 ORTHO05D006050 2.6e-17 92.4 106 51.9
Rhsim07G0167900 Rhododendron simsii HOM05D004872 ORTHO05D006050 2.6e-17 92.4 88 56.8
Glyma.01G027700 Glycine max HOM05D004872 ORTHO05D006050 3.4e-17 92.0 99 53.5
HanXRQChr08g0217181 Helianthus annuus HOM05D004872 ORTHO05D006050 5.8e-17 91.3 85 58.8
Medtr7g096840 Medicago truncatula HOM05D004872 ORTHO05D006050 5.8e-17 91.3 100 53.0
Oeu026038.1 Olea europaea HOM05D004872 ORTHO05D006050 5.8e-17 91.3 101 53.5
QL01p016491 Quercus lobata HOM05D004872 ORTHO05D006050 5.8e-17 91.3 77 61.0
QL01p024148 Quercus lobata HOM05D004872 ORTHO05D006050 5.8e-17 91.3 77 61.0
Hund07423 Selenicereus undatus HOM05D004872 ORTHO05D006050 5.8e-17 91.3 78 64.1
EL10Ac4g10086 Beta vulgaris HOM05D004872 ORTHO05D006050 7.5e-17 90.9 78 64.1
Migut.E01400 Erythranthe guttata HOM05D004872 ORTHO05D006050 7.5e-17 90.9 122 58.2
Oeu040527.1 Olea europaea HOM05D004872 ORTHO05D006050 7.5e-17 90.9 103 51.5
Carub.0004s2739 Capsella rubella HOM05D004872 ORTHO05D006050 9.8e-17 90.5 104 55.8
Sp4g26910 Schrenkiella parvula HOM05D004872 ORTHO05D006050 9.8e-17 90.5 92 59.8
Nitab4.5_0001582g0110 Nicotiana tabacum HOM05D004872 ORTHO05D006050 1.7e-16 89.7 121 57.0
A05p04990 Brassica napus HOM05D004872 ORTHO05D006050 2.2e-16 89.4 90 61.1
CARHR140030 Cardamine hirsuta HOM05D004872 ORTHO05D006050 2.2e-16 89.4 104 55.8
Ciclev10006059m.g Citrus clementina HOM05D004872 ORTHO05D006050 2.2e-16 89.4 95 55.8
CsaV3_6G038800 Cucumis sativus L. HOM05D004872 ORTHO05D006050 2.2e-16 89.4 93 59.1
TWI31G0308 Tripterygium wilfordii HOM05D004872 ORTHO05D006050 2.2e-16 89.4 126 50.0
TPR.G29301 Trifolium pratense HOM05D004872 ORTHO05D006050 2.9e-16 89.0 102 52.0
MELO3C014544.2 Cucumis melo HOM05D004872 ORTHO05D006050 4.9e-16 88.2 87 60.9
Psat2g130480 Pisum sativum HOM05D004872 ORTHO05D006050 4.9e-16 88.2 100 51.0
vmacro05825 Vaccinium macrocarpon HOM05D004872 ORTHO05D006050 6.4e-16 87.8 84 52.4
Aa31LG1G26360 Aethionema arabicum HOM05D004872 ORTHO05D006050 8.3e-16 87.4 104 52.9
ClCG02G022680 Citrullus lanatus HOM05D004872 ORTHO05D006050 8.3e-16 87.4 132 56.1
BcaC02g11364 Brassica carinata HOM05D004872 ORTHO05D006050 1.1e-15 87.0 103 55.3
TPR.G26917 Trifolium pratense HOM05D004872 ORTHO05D006050 1.1e-15 87.0 102 51.0
BraA05t20203Z Brassica rapa HOM05D004872 ORTHO05D006050 1.4e-15 86.7 102 54.9
CANSAT54G2026 Cannabis sativa HOM05D004872 ORTHO05D006050 1.4e-15 86.7 107 51.4
Aqoxy2G00467 Aquilegia oxysepala HOM05D004872 ORTHO05D006050 1.9e-15 86.3 78 61.5
MBI17_g09534_MAGBIO Magnolia biondii HOM05D004872 ORTHO05D006050 1.9e-15 86.3 102 52.0
AL4G43900 Arabidopsis lyrata HOM05D004872 ORTHO05D006050 2.4e-15 85.9 100 53.0
VMungo0251G0214 Vigna mungo HOM05D004872 ORTHO05D006050 2.4e-15 85.9 106 49.1
BraA05t19473Z Brassica rapa HOM05D004872 ORTHO05D006050 3.2e-15 85.5 86 61.6
SalBow6G3136 Salvia bowleyana HOM05D004872 ORTHO05D006050 3.2e-15 85.5 98 49.0
BcaB02g08868 Brassica carinata HOM05D004872 ORTHO05D006050 5.4e-15 84.7 96 55.2
PSO017G2452 Papaver somniferum HOM05D004872 ORTHO05D006050 5.4e-15 84.7 109 48.6
PSO017G5814 Papaver somniferum HOM05D004872 ORTHO05D006050 5.4e-15 84.7 109 48.6
PSO529G0002 Papaver somniferum HOM05D004872 ORTHO05D006050 5.4e-15 84.7 109 48.6
PSO541G2017 Papaver somniferum HOM05D004872 ORTHO05D006050 5.4e-15 84.7 111 47.7
PSO591G0356 Papaver somniferum HOM05D004872 ORTHO05D006050 5.4e-15 84.7 109 48.6
PSO705G0001 Papaver somniferum HOM05D004872 ORTHO05D006050 5.4e-15 84.7 109 48.6
Aa31LG9G10050 Aethionema arabicum HOM05D004872 ORTHO05D006050 7.0e-15 84.3 105 45.7
Aqoxy7G03169 Aquilegia oxysepala HOM05D004872 ORTHO05D006050 7.0e-15 84.3 78 60.3
Phvul.002G255800 Phaseolus vulgaris HOM05D004872 ORTHO05D006050 7.0e-15 84.3 99 50.5
BcaC02g12267 Brassica carinata HOM05D004872 ORTHO05D006050 9.2e-15 84.0 86 60.5
C04p05820 Brassica napus HOM05D004872 ORTHO05D006050 9.2e-15 84.0 86 60.5
BolC4t22211H Brassica oleracea HOM05D004872 ORTHO05D006050 9.2e-15 84.0 86 60.5
PSO591G0248 Papaver somniferum HOM05D004872 ORTHO05D006050 9.2e-15 84.0 109 48.6
AT2G44820 Arabidopsis thaliana HOM05D004872 ORTHO05D006050 1.2e-14 83.6 100 53.0
SalBow1G8122 Salvia bowleyana HOM05D004872 ORTHO05D006050 1.2e-14 83.6 88 51.1
Sp2g10980 Schrenkiella parvula HOM05D004872 ORTHO05D006050 1.2e-14 83.6 102 52.9
Lalb_Chr04g0249071 Lupinus albus HOM05D004872 ORTHO05D006050 1.6e-14 83.2 103 53.4
A05p12650 Brassica napus HOM05D004872 ORTHO05D006050 2.1e-14 82.8 101 51.5
Hma1.2p1_0299F.1_g117840 Hydrangea macrophylla HOM05D004872 ORTHO05D006050 2.1e-14 82.8 119 56.3
Aqoxy1G01418 Aquilegia oxysepala HOM05D004872 ORTHO05D006050 1.0e-13 80.5 104 51.9
Aqoxy72s001 Aquilegia oxysepala HOM05D004872 ORTHO05D006050 1.0e-13 80.5 104 51.9
BcaB02g10512 Brassica carinata HOM05D004872 ORTHO05D006050 1.0e-13 80.5 101 52.5
Eucgr.J02277 Eucalyptus grandis HOM05D004872 ORTHO05D006050 1.3e-13 80.1 102 49.0
Solyc11g005570.2 Solanum lycopersicum HOM05D004872 ORTHO05D006050 3.0e-13 79.0 104 49.0
Sopen11g001540 Solanum pennellii HOM05D004872 ORTHO05D006050 3.0e-13 79.0 104 49.0
Sed0007255 Sechium edule HOM05D004872 ORTHO05D006050 5.1e-13 78.2 77 62.3
CDE05G2894 Ceratophyllum demersum HOM05D004872 ORTHO05D006050 2.5e-12 75.9 98 49.0
ATR0665G028 Amborella trichopoda HOM05D004872 ORTHO05D006050 3.6e-11 72.0 99 44.4
Os01g0224500 Oryza sativa ssp. japonica HOM05D004872 ORTHO05D006050 1.4e-10 70.1 102 44.1
Zm00001eb192850 Zea mays HOM05D004872 ORTHO05D006050 2.3e-10 69.3 102 45.1
Zm00001eb281550 Zea mays HOM05D004872 ORTHO05D006050 5.2e-10 68.2 102 45.1
Zm00001eb416880 Zea mays HOM05D004872 ORTHO05D006050 8.9e-10 67.4 99 44.4
Atru.chr1.3406 Acer truncatum HOM05D004872 ORTHO05D006050 1.9e-07 59.7 91 42.9
PGR102G1802 Punica granatum HOM05D004872 ORTHO05D006050 2.4e-07 59.3 111 38.7
arahy.Tifrunner.gnm1.ann1.X2Q8UN Arachis hypogaea HOM05D004872 ORTHO05D006050 3.2e-07 58.9 119 36.1
Ca_21429_v3 Cicer arietinum L. HOM05D004872 ORTHO05D006050 3.2e-07 58.9 52 55.8
HPP92_015870 Vanilla planifolia HOM05D004872 ORTHO05D006050 9.2e-07 57.4 100 41.0
TPR.G14060 Trifolium pratense HOM05D004872 ORTHO05D006050 4.6e-06 55.1 101 41.6


User provided reference genes

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