Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc11g0003110 Simmondsia chinensis HOM05D004872 ORTHO05D006050 4.6e-90 334.7 193 100.0
Sc11g0003120 Simmondsia chinensis HOM05D004872 ORTHO05D006050 1.6e-45 186.8 119 99.2
Dinv22205 Davidia involucrata HOM05D004872 ORTHO05D006050 6.1e-42 174.9 159 59.7
AUR62000220 Chenopodium quinoa HOM05D004872 ORTHO05D006050 3.0e-41 172.6 182 61.0
RcHm_v2.0_Chr5g0046151 Rosa chinensis HOM05D004872 ORTHO05D006050 3.0e-41 172.6 171 57.9
FAN25G2824 Fragaria x ananassa HOM05D004872 ORTHO05D006050 4.4e-40 168.7 176 56.2
FvH4_3g25170 Fragaria vesca HOM05D004872 ORTHO05D006050 1.7e-39 166.8 177 58.2
Manes.09G068000 Manihot esculenta HOM05D004872 ORTHO05D006050 4.9e-39 165.2 149 59.1
Duzib150G1163 Durio zibethinus HOM05D004872 ORTHO05D006050 6.3e-39 164.9 151 59.6
Ah.04g159640 Amaranthus hybridus HOM05D004872 ORTHO05D006050 1.1e-38 164.1 167 55.7
MSTRG.1742 Avicennia marina HOM05D004872 ORTHO05D006050 1.8e-38 163.3 160 57.5
Cpa.g.sc34.184 Carica papaya HOM05D004872 ORTHO05D006050 3.1e-38 162.5 149 59.7
SGA_v2.0_scaffold144G35815 Striga asiatica HOM05D004872 ORTHO05D006050 3.1e-38 162.5 164 56.7
AUR62006565 Chenopodium quinoa HOM05D004872 ORTHO05D006050 4.1e-38 162.2 141 61.7
Thecc.09G254600 Theobroma cacao HOM05D004872 ORTHO05D006050 4.1e-38 162.2 151 59.6
Atru.chr4.2930 Acer truncatum HOM05D004872 ORTHO05D006050 5.9e-37 158.3 185 51.4
MD12G1010900 Malus domestica HOM05D004872 ORTHO05D006050 1.3e-36 157.1 166 53.0
Prupe.7G012800 Prunus persica HOM05D004872 ORTHO05D006050 2.3e-36 156.4 171 52.6
CiPaw.13G148000 Carya illinoinensis HOM05D004872 ORTHO05D006050 2.9e-36 156.0 162 52.5
GSVIVG01037356001 Vitis vinifera HOM05D004872 ORTHO05D006050 2.9e-36 156.0 153 57.5
Hund07423 Selenicereus undatus HOM05D004872 ORTHO05D006050 5.0e-36 155.2 140 60.0
TAR633G0253 Trochodendron aralioides HOM05D004872 ORTHO05D006050 5.0e-36 155.2 160 55.6
Prupe.4G268800 Prunus persica HOM05D004872 ORTHO05D006050 8.6e-36 154.5 138 60.1
arahy.Tifrunner.gnm1.ann1.U00P2R Arachis hypogaea HOM05D004872 ORTHO05D006050 1.1e-35 154.1 160 53.8
Gohir.A09G108400 Gossypium hirsutum HOM05D004872 ORTHO05D006050 1.1e-35 154.1 159 63.5
Peaxi162Scf00025g02826 Petunia axillaris HOM05D004872 ORTHO05D006050 1.1e-35 154.1 162 61.1
DCAR_030961 Daucus carota HOM05D004872 ORTHO05D006050 1.5e-35 153.7 161 54.7
Rhsim07G0167900 Rhododendron simsii HOM05D004872 ORTHO05D006050 1.5e-35 153.7 150 55.3
Lsat_1_v5_gn_3_110040 Lactuca sativa HOM05D004872 ORTHO05D006050 1.9e-35 153.3 144 55.6
Cfa009914 Carpinus fangiana HOM05D004872 ORTHO05D006050 2.5e-35 152.9 168 58.9
CSS0006428 Camellia sinensis var. sinensis HOM05D004872 ORTHO05D006050 4.2e-35 152.1 145 54.5
Sabra13G0065000 Salix brachista HOM05D004872 ORTHO05D006050 4.2e-35 152.1 164 55.5
arahy.Tifrunner.gnm1.ann1.EX2XSN Arachis hypogaea HOM05D004872 ORTHO05D006050 5.5e-35 151.8 160 51.9
Lsat_1_v5_gn_8_24740 Lactuca sativa HOM05D004872 ORTHO05D006050 7.2e-35 151.4 144 57.6
Cc11_g04500 Coffea canephora HOM05D004872 ORTHO05D006050 1.6e-34 150.2 147 56.5
EL10Ac4g10086 Beta vulgaris HOM05D004872 ORTHO05D006050 2.1e-34 149.8 141 59.6
SalBow6G3136 Salvia bowleyana HOM05D004872 ORTHO05D006050 2.8e-34 149.4 154 51.9
CiPaw.14G110500 Carya illinoinensis HOM05D004872 ORTHO05D006050 3.6e-34 149.1 152 51.3
Gohir.D09G105300 Gossypium hirsutum HOM05D004872 ORTHO05D006050 4.7e-34 148.7 140 59.3
CAN.G1549.27 Capsicum annuum HOM05D004872 ORTHO05D006050 8.0e-34 147.9 147 55.1
HanXRQChr10g0315331 Helianthus annuus HOM05D004872 ORTHO05D006050 8.0e-34 147.9 155 54.8
Actinidia06989 Actinidia chinensis HOM05D004500 ORTHO05D005775 1.0e-33 147.5 113 64.6
Haze_23271 Corylus avellana HOM05D004500 ORTHO05D005775 1.0e-33 147.5 169 56.8
SalBow1G8122 Salvia bowleyana HOM05D004872 ORTHO05D006050 1.4e-33 147.1 144 54.2
THA.LOC104816943 Tarenaya hassleriana HOM05D004872 ORTHO05D006050 1.4e-33 147.1 149 53.0
Potri.013G075500 Populus trichocarpa HOM05D004872 ORTHO05D006050 1.8e-33 146.7 142 59.9
FAN11G3172 Fragaria x ananassa HOM05D004872 ORTHO05D006050 2.3e-33 146.4 131 65.6
HanXRQChr08g0217181 Helianthus annuus HOM05D004872 ORTHO05D006050 2.3e-33 146.4 145 55.2
PGSC0003DMG400003977 Solanum tuberosum HOM05D004872 ORTHO05D006050 2.3e-33 146.4 147 55.1
COL.COLO4_24934 Corchorus olitorius HOM05D004872 ORTHO05D006050 3.0e-33 146.0 136 58.1
ECA233G5422 Erigeron canadensis HOM05D004872 ORTHO05D006050 3.0e-33 146.0 144 54.9
Nitab4.5_0002138g0010 Nicotiana tabacum HOM05D004872 ORTHO05D006050 3.0e-33 146.0 162 58.0
Nn2g15815 Nelumbo nucifera HOM05D004872 ORTHO05D006050 8.9e-33 144.4 160 52.5
TWI31G0308 Tripterygium wilfordii HOM05D004872 ORTHO05D006050 8.9e-33 144.4 188 50.0
Migut.E01400 Erythranthe guttata HOM05D004872 ORTHO05D006050 1.2e-32 144.1 178 55.6
Gorai.006G122300 Gossypium raimondii HOM05D004872 ORTHO05D006050 1.5e-32 143.7 141 58.9
Lj6g0009628 Lotus japonicus HOM05D004872 ORTHO05D006050 2.0e-32 143.3 159 48.4
Lj6g0013181 Lotus japonicus HOM05D004872 ORTHO05D006050 2.0e-32 143.3 159 48.4
Hma1.2p1_0299F.1_g117840 Hydrangea macrophylla HOM05D004872 ORTHO05D006050 2.6e-32 142.9 178 56.7
Thhalv10019047m.g Eutrema salsugineum HOM05D004872 ORTHO05D006050 4.4e-32 142.1 156 55.8
Ciclev10006059m.g Citrus clementina HOM05D004872 ORTHO05D006050 5.7e-32 141.7 153 52.9
Aqoxy2G00467 Aquilegia oxysepala HOM05D004872 ORTHO05D006050 9.8e-32 141.0 139 56.1
arahy.Tifrunner.gnm1.ann1.K1U5S9 Arachis hypogaea HOM05D004872 ORTHO05D006050 1.3e-31 140.6 192 44.8
arahy.Tifrunner.gnm1.ann1.R4J47E Arachis hypogaea HOM05D004872 ORTHO05D006050 1.3e-31 140.6 192 45.8
Nn8g39701 Nelumbo nucifera HOM05D004872 ORTHO05D006050 1.3e-31 140.6 160 51.9
QL01p016491 Quercus lobata HOM05D004872 ORTHO05D006050 1.7e-31 140.2 139 51.8
QL01p024148 Quercus lobata HOM05D004872 ORTHO05D006050 1.7e-31 140.2 139 51.8
Aqoxy7G03169 Aquilegia oxysepala HOM05D004872 ORTHO05D006050 2.8e-31 139.4 139 54.7
CsaV3_6G038800 Cucumis sativus L. HOM05D004872 ORTHO05D006050 3.7e-31 139.0 149 55.0
MELO3C014544.2 Cucumis melo HOM05D004872 ORTHO05D006050 6.3e-31 138.3 146 54.8
Glyma.01G027700 Glycine max HOM05D004872 ORTHO05D006050 6.3e-31 138.3 160 48.8
MBI17_g09534_MAGBIO Magnolia biondii HOM05D004872 ORTHO05D006050 6.3e-31 138.3 150 52.7
Glyma.08G136100 Glycine max HOM05D004872 ORTHO05D006050 8.3e-31 137.9 167 48.5
CANSAT54G2026 Cannabis sativa HOM05D004872 ORTHO05D006050 1.1e-30 137.5 161 51.6
ClCG02G022680 Citrullus lanatus HOM05D004872 ORTHO05D006050 1.1e-30 137.5 188 53.7
Manes.08G069866 Manihot esculenta HOM05D004872 ORTHO05D006050 1.4e-30 137.1 150 53.3
BolC4t23202H Brassica oleracea HOM05D004872 ORTHO05D006050 1.2e-29 134.0 141 54.6
Aqoxy1G01418 Aquilegia oxysepala HOM05D004872 ORTHO05D006050 2.0e-29 133.3 166 50.6
Aqoxy72s001 Aquilegia oxysepala HOM05D004872 ORTHO05D006050 2.0e-29 133.3 166 50.6
CARHR140030 Cardamine hirsuta HOM05D004872 ORTHO05D006050 2.0e-29 133.3 162 52.5
AL4G43900 Arabidopsis lyrata HOM05D004872 ORTHO05D006050 2.7e-29 132.9 146 52.7
Sp4g26910 Schrenkiella parvula HOM05D004872 ORTHO05D006050 2.7e-29 132.9 138 55.8
Medtr7g096840 Medicago truncatula HOM05D004872 ORTHO05D006050 3.5e-29 132.5 157 45.9
Eucgr.J02277 Eucalyptus grandis HOM05D004872 ORTHO05D006050 5.9e-29 131.7 161 48.4
TPR.G29301 Trifolium pratense HOM05D004872 ORTHO05D006050 5.9e-29 131.7 162 48.1
Carub.0004s2739 Capsella rubella HOM05D004872 ORTHO05D006050 7.8e-29 131.3 162 50.6
VMungo0251G0214 Vigna mungo HOM05D004872 ORTHO05D006050 7.8e-29 131.3 170 45.3
Aa31LG1G26360 Aethionema arabicum HOM05D004872 ORTHO05D006050 1.0e-28 131.0 150 51.3
Psat2g130480 Pisum sativum HOM05D004872 ORTHO05D006050 1.3e-28 130.6 140 50.0
Sed0007255 Sechium edule HOM05D004872 ORTHO05D006050 1.3e-28 130.6 135 58.5
Solyc11g005570.2 Solanum lycopersicum HOM05D004872 ORTHO05D006050 1.7e-28 130.2 147 50.3
Sopen11g001540 Solanum pennellii HOM05D004872 ORTHO05D006050 1.7e-28 130.2 147 50.3
A05p04990 Brassica napus HOM05D004872 ORTHO05D006050 3.9e-28 129.0 148 52.0
Phvul.002G255800 Phaseolus vulgaris HOM05D004872 ORTHO05D006050 3.9e-28 129.0 160 46.9
TPR.G26917 Trifolium pratense HOM05D004872 ORTHO05D006050 5.0e-28 128.6 162 47.5
AT2G44820 Arabidopsis thaliana HOM05D004872 ORTHO05D006050 8.6e-28 127.9 157 49.7
ECA236G0590 Erigeron canadensis HOM05D004872 ORTHO05D006050 8.6e-28 127.9 103 65.0
PSO017G2452 Papaver somniferum HOM05D004872 ORTHO05D006050 8.6e-28 127.9 137 54.0
PSO017G5814 Papaver somniferum HOM05D004872 ORTHO05D006050 8.6e-28 127.9 137 54.0
PSO529G0002 Papaver somniferum HOM05D004872 ORTHO05D006050 8.6e-28 127.9 137 54.0
PSO591G0356 Papaver somniferum HOM05D004872 ORTHO05D006050 8.6e-28 127.9 137 54.0
PSO705G0001 Papaver somniferum HOM05D004872 ORTHO05D006050 8.6e-28 127.9 137 54.0
PSO541G2017 Papaver somniferum HOM05D004872 ORTHO05D006050 1.1e-27 127.5 139 53.2
Sp2g10980 Schrenkiella parvula HOM05D004872 ORTHO05D006050 1.1e-27 127.5 148 52.0
BraA05t20203Z Brassica rapa HOM05D004872 ORTHO05D006050 1.5e-27 127.1 152 52.6
PSO591G0248 Papaver somniferum HOM05D004872 ORTHO05D006050 1.5e-27 127.1 137 54.0
A05p12650 Brassica napus HOM05D004872 ORTHO05D006050 3.3e-27 125.9 158 49.4
Lalb_Chr04g0249071 Lupinus albus HOM05D004872 ORTHO05D006050 4.3e-27 125.6 166 46.4
CDE05G2894 Ceratophyllum demersum HOM05D004872 ORTHO05D006050 5.6e-27 125.2 137 53.3
Nitab4.5_0001582g0110 Nicotiana tabacum HOM05D004872 ORTHO05D006050 5.6e-27 125.2 144 59.0
BraA05t19473Z Brassica rapa HOM05D004872 ORTHO05D006050 9.5e-27 124.4 144 52.1
BcaC02g12267 Brassica carinata HOM05D004872 ORTHO05D006050 3.6e-26 122.5 144 51.4
C04p05820 Brassica napus HOM05D004872 ORTHO05D006050 3.6e-26 122.5 144 51.4
BcaB02g10512 Brassica carinata HOM05D004872 ORTHO05D006050 8.0e-26 121.3 144 51.4
BcaB02g08868 Brassica carinata HOM05D004872 ORTHO05D006050 1.8e-25 120.2 138 50.0
BolC4t22211H Brassica oleracea HOM05D004872 ORTHO05D006050 1.8e-25 120.2 128 54.7
Oeu026038.1 Olea europaea HOM05D004872 ORTHO05D006050 4.0e-25 119.0 120 55.8
Oeu040527.1 Olea europaea HOM05D004872 ORTHO05D006050 1.2e-24 117.5 122 54.1
vmacro05825 Vaccinium macrocarpon HOM05D004872 ORTHO05D006050 3.7e-23 112.5 141 45.4
Aa31LG9G10050 Aethionema arabicum HOM05D004872 ORTHO05D006050 4.9e-23 112.1 158 43.0
Os01g0224500 Oryza sativa ssp. japonica HOM05D004872 ORTHO05D006050 6.4e-23 111.7 156 44.2
CiPaw.13G148200 Carya illinoinensis HOM05D004872 ORTHO05D006050 7.0e-22 108.2 143 44.8
HPP92_015870 Vanilla planifolia HOM05D004872 ORTHO05D006050 4.6e-21 105.5 138 48.6
BcaC02g11364 Brassica carinata HOM05D004872 ORTHO05D006050 5.0e-20 102.1 119 54.6
ATR0665G028 Amborella trichopoda HOM05D004872 ORTHO05D006050 8.6e-20 101.3 124 46.0
Zm00001eb192850 Zea mays HOM05D004872 ORTHO05D006050 1.9e-19 100.1 142 43.7
AL7G43510 Arabidopsis lyrata HOM05D004872 ORTHO05D006050 6.2e-18 95.1 140 45.7
Zm00001eb281550 Zea mays HOM05D004872 ORTHO05D006050 1.5e-16 90.5 128 46.1
PGR102G1802 Punica granatum HOM05D004872 ORTHO05D006050 2.9e-15 86.3 145 37.2
arahy.Tifrunner.gnm1.ann1.X2Q8UN Arachis hypogaea HOM05D004872 ORTHO05D006050 6.4e-15 85.1 142 39.4
AagrBONN_evm.TU.Sc2ySwM_362.236 Anthoceros agrestis HOM05D004872 ORTHO05D006050 2.5e-11 73.2 156 30.8
SEGI_13451 Sequoiadendron giganteum HOM05D004872 ORTHO05D006050 9.5e-11 71.2 142 35.2
Pp3c23_7100 Physcomitrium patens HOM05D004872 ORTHO05D006050 1.2e-10 70.9 108 37.0
Aqoxy7G03168 Aquilegia oxysepala HOM05D004872 ORTHO05D006050 4.7e-10 68.9 97 40.2
Zm00001eb416880 Zea mays HOM05D004872 ORTHO05D006050 8.1e-10 68.2 99 45.5
Mapoly0036s0026 Marchantia polymorpha HOM05D004872 ORTHO05D006050 1.8e-09 67.0 144 31.9
HanXRQChr17g0569331 Helianthus annuus HOM05D004872 ORTHO05D006050 5.2e-09 65.5 65 49.2
TPR.G14060 Trifolium pratense HOM05D004872 ORTHO05D006050 1.5e-08 63.9 120 40.0
Atru.chr1.3406 Acer truncatum HOM05D004872 ORTHO05D006050 2.2e-07 60.1 91 41.8
Ca_21429_v3 Cicer arietinum L. HOM05D004872 ORTHO05D006050 8.4e-07 58.2 52 55.8
Duzib170G0487 Durio zibethinus HOM05D004872 ORTHO05D006050 1.4e-06 57.4 40 60.0
C04p16540 Brassica napus HOM05D004872 ORTHO05D006050 9.2e-06 54.7 175 33.1


User provided reference genes

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