Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc11g0003050 Simmondsia chinensis HOM05D005369 ORTHO05D006955 3.3e-116 421.8 223 100.0
EL10Ac6g14509 Beta vulgaris HOM05D005369 ORTHO05D006955 5.3e-90 334.7 216 79.6
AUR62035293 Chenopodium quinoa HOM05D005369 ORTHO05D006955 3.8e-88 328.6 216 78.2
Cfa018636 Carpinus fangiana HOM05D005369 ORTHO05D006955 6.1e-86 321.2 219 76.3
AUR62002925 Chenopodium quinoa HOM05D005369 ORTHO05D006955 1.0e-85 320.5 216 77.8
Potri.010G130300 Populus trichocarpa HOM05D005369 ORTHO05D006955 1.4e-85 320.1 217 76.5
Sabra08G0087600 Salix brachista HOM05D005369 ORTHO05D006955 5.2e-85 318.2 217 76.0
Ah.03g137930 Amaranthus hybridus HOM05D005369 ORTHO05D006955 1.2e-84 317.0 207 79.7
Potri.008G115700 Populus trichocarpa HOM05D005369 ORTHO05D006955 1.5e-84 316.6 210 76.7
Cc11_g10670 Coffea canephora HOM05D005369 ORTHO05D006955 2.6e-84 315.8 210 78.6
QL01p001045 Quercus lobata HOM05D005369 ORTHO05D006955 2.6e-84 315.8 221 73.8
CSS0041757 Camellia sinensis var. sinensis HOM05D005369 ORTHO05D006955 7.5e-84 314.3 216 75.0
CiPaw.15G002800 Carya illinoinensis HOM05D005369 ORTHO05D006955 1.7e-83 313.2 219 74.4
Manes.14G096800 Manihot esculenta HOM05D005369 ORTHO05D006955 2.2e-83 312.8 210 76.2
Lalb_Chr21g0313361 Lupinus albus HOM05D005369 ORTHO05D006955 3.7e-83 312.0 221 73.3
Thecc.02G362000 Theobroma cacao HOM05D005369 ORTHO05D006955 8.3e-83 310.8 211 77.3
Gohir.A12G171800 Gossypium hirsutum HOM05D005369 ORTHO05D006955 1.1e-82 310.5 210 77.1
Actinidia14846 Actinidia chinensis HOM05D005369 ORTHO05D006955 1.4e-82 310.1 216 74.1
Phvul.003G026300 Phaseolus vulgaris HOM05D005369 ORTHO05D006955 1.4e-82 310.1 210 75.7
Gohir.D12G174200 Gossypium hirsutum HOM05D005369 ORTHO05D006955 1.8e-82 309.7 210 77.1
Gorai.008G186900 Gossypium raimondii HOM05D005369 ORTHO05D006955 1.8e-82 309.7 210 77.1
Duzib248G0106 Durio zibethinus HOM05D005369 ORTHO05D006955 3.1e-82 308.9 220 72.3
Duzib251G0390 Durio zibethinus HOM05D005369 ORTHO05D006955 3.1e-82 308.9 210 75.7
Cpa.g.sc53.119 Carica papaya HOM05D005369 ORTHO05D006955 7.0e-82 307.8 212 75.0
TAR622G0781 Trochodendron aralioides HOM05D005369 ORTHO05D006955 7.0e-82 307.8 221 73.8
TAR622G1222 Trochodendron aralioides HOM05D005369 ORTHO05D006955 7.0e-82 307.8 221 73.8
Lalb_Chr02g0151791 Lupinus albus HOM05D005369 ORTHO05D006955 9.1e-82 307.4 221 72.9
Phvul.001G005600 Phaseolus vulgaris HOM05D005369 ORTHO05D006955 9.1e-82 307.4 224 72.3
COL.COLO4_07861 Corchorus olitorius HOM05D005369 ORTHO05D006955 1.2e-81 307.0 212 74.5
Eucgr.G02355 Eucalyptus grandis HOM05D005369 ORTHO05D006955 1.6e-81 306.6 216 74.1
Prupe.1G304600 Prunus persica HOM05D005369 ORTHO05D006955 1.6e-81 306.6 216 73.1
TPR.G18699 Trifolium pratense HOM05D005369 ORTHO05D006955 2.0e-81 306.2 210 74.8
TAR374G0397 Trochodendron aralioides HOM05D005369 ORTHO05D006955 2.0e-81 306.2 209 76.6
GSVIVG01011963001 Vitis vinifera HOM05D000398 ORTHO05D000551 2.0e-81 306.2 216 74.1
arahy.Tifrunner.gnm1.ann1.1BLX98 Arachis hypogaea HOM05D005369 ORTHO05D006955 3.5e-81 305.4 212 74.1
arahy.Tifrunner.gnm1.ann1.DD8P8M Arachis hypogaea HOM05D005369 ORTHO05D006955 3.5e-81 305.4 212 74.1
Psat6g179520 Pisum sativum HOM05D005369 ORTHO05D006955 4.5e-81 305.1 210 73.8
THA.LOC104800064 Tarenaya hassleriana HOM05D005369 ORTHO05D006955 4.5e-81 305.1 216 72.2
Medtr1g093770 Medicago truncatula HOM05D005369 ORTHO05D006955 5.9e-81 304.7 210 74.8
ClCG05G023060 Citrullus lanatus HOM05D005369 ORTHO05D006955 7.7e-81 304.3 216 70.8
Glyma.01G089100 Glycine max HOM05D005369 ORTHO05D006955 7.7e-81 304.3 221 71.5
Nitab4.5_0005803g0060 Nicotiana tabacum HOM05D005369 ORTHO05D006955 7.7e-81 304.3 221 71.0
PGR119G0805 Punica granatum HOM05D005369 ORTHO05D006955 1.3e-80 303.5 211 74.9
Atru.chr11.1367 Acer truncatum HOM05D005369 ORTHO05D006955 1.7e-80 303.1 212 73.1
MD16G1049100 Malus domestica HOM05D005369 ORTHO05D006955 1.7e-80 303.1 216 73.6
VMungo1215G0010 Vigna mungo HOM05D005369 ORTHO05D006955 1.7e-80 303.1 210 73.8
Glyma.02G100900 Glycine max HOM05D005369 ORTHO05D006955 2.2e-80 302.8 221 71.0
TAR374G1244 Trochodendron aralioides HOM05D005369 ORTHO05D006955 2.2e-80 302.8 209 76.1
CANSAT64G0649 Cannabis sativa HOM05D005369 ORTHO05D006955 2.9e-80 302.4 220 70.5
Ca_10520_v3 Cicer arietinum L. HOM05D005369 ORTHO05D006955 2.9e-80 302.4 210 75.2
Nitab4.5_0011812g0010 Nicotiana tabacum HOM05D005369 ORTHO05D006955 3.8e-80 302.0 227 70.5
Haze_17433 Corylus avellana HOM05D005369 ORTHO05D006955 8.5e-80 300.8 219 72.1
Sed0002723 Sechium edule HOM05D005369 ORTHO05D006955 8.5e-80 300.8 219 69.9
HanXRQChr02g0043381 Helianthus annuus HOM05D005369 ORTHO05D006955 1.5e-79 300.1 218 71.6
Nn4g23711 Nelumbo nucifera HOM05D005369 ORTHO05D006955 1.9e-79 299.7 216 73.1
CDE08G0426 Ceratophyllum demersum HOM05D005369 ORTHO05D006955 2.5e-79 299.3 219 72.6
Rhsim09G0113000 Rhododendron simsii HOM05D005369 ORTHO05D006955 2.5e-79 299.3 227 70.0
SalBow8G4109 Salvia bowleyana HOM05D005369 ORTHO05D006955 3.2e-79 298.9 221 70.6
TWI31G0309 Tripterygium wilfordii HOM05D005369 ORTHO05D006955 5.5e-79 298.1 212 72.6
DCAR_007223 Daucus carota HOM05D005369 ORTHO05D006955 7.2e-79 297.7 219 71.2
FAN22G1382 Fragaria x ananassa HOM05D005369 ORTHO05D006955 1.2e-78 297.0 216 72.7
Hma1.2p1_0862F.1_g229880 Hydrangea macrophylla HOM05D005369 ORTHO05D006955 1.2e-78 297.0 242 68.2
MELO3C012211.2 Cucumis melo HOM05D005369 ORTHO05D006955 1.6e-78 296.6 216 69.9
MD13G1047300 Malus domestica HOM05D005369 ORTHO05D006955 3.6e-78 295.4 216 72.2
DCAR_030087 Daucus carota HOM05D005369 ORTHO05D006955 4.7e-78 295.0 219 71.2
Lj3A1020T60 Lonicera japonica HOM05D005369 ORTHO05D006955 4.7e-78 295.0 221 70.1
CAN.G184.84 Capsicum annuum HOM05D005369 ORTHO05D006955 6.1e-78 294.7 217 71.4
Ciclev10032187m.g Citrus clementina HOM05D005369 ORTHO05D006955 6.1e-78 294.7 221 70.1
FvH4_4g28180 Fragaria vesca HOM05D005369 ORTHO05D006955 1.0e-77 293.9 216 71.8
FAN12G2281 Fragaria x ananassa HOM05D005369 ORTHO05D006955 1.0e-77 293.9 216 71.8
MSTRG.7694 Avicennia marina HOM05D005369 ORTHO05D006955 1.4e-77 293.5 215 71.6
Lj2g0009483 Lotus japonicus HOM05D005369 ORTHO05D006955 1.4e-77 293.5 210 72.9
CsaV3_5G033930 Cucumis sativus L. HOM05D005369 ORTHO05D006955 3.0e-77 292.4 216 69.0
RcHm_v2.0_Chr4g0435941 Rosa chinensis HOM05D005369 ORTHO05D006955 4.0e-77 292.0 216 70.8
CDE09G0148 Ceratophyllum demersum HOM05D005369 ORTHO05D009095 5.2e-77 291.6 219 70.8
FAN07G1070 Fragaria x ananassa HOM05D005369 ORTHO05D006955 5.2e-77 291.6 216 70.8
Actinidia16612 Actinidia chinensis HOM05D005369 ORTHO05D006955 1.5e-76 290.0 245 64.9
ECA246G2775 Erigeron canadensis HOM05D005369 ORTHO05D006955 2.6e-76 289.3 215 68.8
FAN17G2107 Fragaria x ananassa HOM05D005369 ORTHO05D006955 9.8e-76 287.3 216 70.8
PGSC0003DMG400000806 Solanum tuberosum HOM05D005369 ORTHO05D006955 2.2e-75 286.2 221 68.8
Solyc05g009910.3 Solanum lycopersicum HOM05D005369 ORTHO05D006955 8.3e-75 284.3 219 68.9
Sopen05g005710 Solanum pennellii HOM05D005369 ORTHO05D006955 8.3e-75 284.3 219 68.9
SGA_v2.0_scaffold16G07883 Striga asiatica HOM05D005369 ORTHO05D006955 1.1e-74 283.9 209 68.9
AT1G25682 Arabidopsis thaliana HOM05D005369 ORTHO05D006955 1.8e-74 283.1 220 67.3
Peaxi162Scf00367g00088 Petunia axillaris HOM05D005369 ORTHO05D006955 2.4e-74 282.7 221 67.4
AL1G39700 Arabidopsis lyrata HOM05D005369 ORTHO05D006955 1.6e-73 280.0 221 66.5
A08p27110 Brassica napus HOM05D005369 ORTHO05D006955 2.0e-73 279.6 217 69.1
BraA08t34656Z Brassica rapa HOM05D005369 ORTHO05D006955 2.0e-73 279.6 217 69.1
Aqoxy5G00581 Aquilegia oxysepala HOM05D005369 ORTHO05D006955 4.5e-73 278.5 210 69.5
Carub.0001s2489 Capsella rubella HOM05D005369 ORTHO05D006955 4.5e-73 278.5 221 66.5
Zm00001eb431600 Zea mays HOM05D005369 ORTHO05D006955 5.9e-73 278.1 221 67.9
Sp1g22610 Schrenkiella parvula HOM05D005369 ORTHO05D006955 7.7e-73 277.7 220 66.8
A09p39670 Brassica napus HOM05D005369 ORTHO05D006955 1.0e-72 277.3 217 68.7
BraA09t39463Z Brassica rapa HOM05D005369 ORTHO05D006955 1.0e-72 277.3 217 68.7
ATR0681G333 Amborella trichopoda HOM05D005369 ORTHO05D006955 1.3e-72 276.9 219 65.3
PSO782G4917 Papaver somniferum HOM05D005369 ORTHO05D006955 1.7e-72 276.6 216 67.6
BolC3t19573H Brassica oleracea HOM05D005369 ORTHO05D006955 2.3e-72 276.2 218 68.8
Lsat_1_v5_gn_3_58161 Lactuca sativa HOM05D005369 ORTHO05D006955 2.3e-72 276.2 217 67.7
Os02g0324300 Oryza sativa ssp. japonica HOM05D005369 ORTHO05D006955 2.9e-72 275.8 221 67.0
BolC5t31214H Brassica oleracea HOM05D005369 ORTHO05D006955 3.8e-72 275.4 217 67.7
PSO063G4132 Papaver somniferum HOM05D005369 ORTHO05D006955 3.8e-72 275.4 216 67.6
Thhalv10008252m.g Eutrema salsugineum HOM05D005369 ORTHO05D006955 5.0e-72 275.0 218 66.5
unitig_744.g24076 Utricularia gibba HOM05D005369 ORTHO05D006955 6.6e-72 274.6 217 66.4
C05p24850 Brassica napus HOM05D005369 ORTHO05D006955 8.6e-72 274.2 217 67.3
C03p72750 Brassica napus HOM05D005369 ORTHO05D006955 1.1e-71 273.9 218 67.9
HPP92_005307 Vanilla planifolia HOM05D005369 ORTHO05D006955 1.5e-71 273.5 219 65.8
BcaC05g26649 Brassica carinata HOM05D005369 ORTHO05D006955 3.3e-71 272.3 224 67.0
BcaNung06366 Brassica carinata HOM05D005369 ORTHO05D006955 9.5e-71 270.8 219 67.1
CARHR025850 Cardamine hirsuta HOM05D005369 ORTHO05D006955 1.6e-70 270.0 222 64.4
FAN28G2319 Fragaria x ananassa HOM05D005369 ORTHO05D006955 2.1e-70 269.6 220 65.0
vmacro11462 Vaccinium macrocarpon HOM05D005369 ORTHO05D006955 4.4e-68 261.9 221 64.3
SEGI_22738 Sequoiadendron giganteum HOM05D005369 ORTHO05D006955 8.3e-67 257.7 221 63.3
FAN26G1965 Fragaria x ananassa HOM05D005369 ORTHO05D006955 1.8e-66 256.5 196 66.8
Aa31LG7G8920 Aethionema arabicum HOM05D005369 ORTHO05D006955 3.2e-66 255.8 221 62.0
Hund05770 Selenicereus undatus HOM05D005369 ORTHO05D006955 3.5e-65 252.3 146 87.0
BcaB03g12082 Brassica carinata HOM05D005369 ORTHO05D006955 5.0e-64 248.4 217 63.1
Migut.L01099 Erythranthe guttata HOM05D005369 ORTHO05D006955 1.8e-61 240.0 225 60.4
AagrBONN_evm.TU.Sc2ySwM_362.2009 Anthoceros agrestis HOM05D005369 ORTHO05D006955 1.5e-55 220.3 221 52.9
SMO353G0425 Selaginella moellendorffii HOM05D005369 ORTHO05D006955 1.2e-54 217.2 212 57.1
FvH4_1g20000 Fragaria vesca HOM05D005369 ORTHO05D006955 8.3e-51 204.5 220 53.6
FAN19G0967 Fragaria x ananassa HOM05D002945 ORTHO05D003314 8.3e-51 204.5 220 53.6
Dinv05803 Davidia involucrata HOM05D005369 ORTHO05D006955 1.4e-50 203.8 126 80.2
Mapoly0084s0019 Marchantia polymorpha HOM05D005369 ORTHO05D006955 1.9e-50 203.4 217 51.6
Pp3c18_5500 Physcomitrium patens HOM05D005369 ORTHO05D006955 1.0e-48 197.6 216 50.9
HanXRQChr17g0551311 Helianthus annuus HOM05D005369 ORTHO05D006955 1.9e-47 193.4 125 76.0
Sabra10G0099400 Salix brachista HOM05D005369 ORTHO05D006955 3.3e-47 192.6 156 67.3
FAN23G0001 Fragaria x ananassa HOM05D002945 ORTHO05D003314 1.1e-39 167.5 114 68.4
CBR_g16048 Chara braunii HOM05D005369 ORTHO05D006955 5.6e-39 165.2 243 43.2
SEGI_28822 Sequoiadendron giganteum HOM05D005369 ORTHO05D006955 3.4e-28 129.4 196 43.4
HanXRQChr14g0430991 Helianthus annuus HOM05D005369 ORTHO05D006955 4.5e-28 129.0 135 56.3
AT1G25988 Arabidopsis thaliana HOM05D005369 ORTHO05D006955 1.6e-25 120.6 78 73.1
Dinv16512 Davidia involucrata HOM05D005369 ORTHO05D006955 4.5e-20 102.4 54 85.2
Cre02.g082050 Chlamydomonas reinhardtii HOM05D005369 ORTHO05D006955 4.2e-18 95.9 215 35.3
CAN.G216.8 Capsicum annuum HOM05D005369 ORTHO05D006955 6.7e-16 88.6 107 52.3
SalBow1G2449 Salvia bowleyana HOM05D001761 ORTHO05D001719 6.2e-14 82.0 50 78.0
Lsat_1_v5_gn_6_27721 Lactuca sativa HOM05D005369 ORTHO05D006955 4.0e-13 79.3 47 72.3
HanXRQChr03g0063441 Helianthus annuus HOM05D005369 ORTHO05D006955 2.5e-10 70.1 55 69.1
MCO09G730 Micromonas commoda HOM05D005369 ORTHO05D006955 5.5e-10 68.9 162 30.9
Haze_27439 Corylus avellana HOM05D005369 ORTHO05D002042 7.4e-07 58.5 185 27.0


User provided reference genes

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