Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc11g0003040 Simmondsia chinensis HOM05D005816 ORTHO05D006915 8.5e-57 223.4 109 100.0
Atru.chr11.1371 Acer truncatum HOM05D005816 ORTHO05D006915 5.2e-14 81.3 130 43.1
Oeu024099.1 Olea europaea HOM05D005816 ORTHO05D006915 1.1e-11 73.6 109 44.0
CiPaw.15G002700 Carya illinoinensis HOM05D005816 ORTHO05D006915 7.0e-11 70.9 74 58.1
Ciclev10033717m.g Citrus clementina HOM05D005816 ORTHO05D006915 1.2e-10 70.1 129 41.1
Glyma.17G121800 Glycine max HOM05D005816 ORTHO05D006915 4.6e-10 68.2 88 45.5
Cc11_g10680 Coffea canephora HOM05D005816 ORTHO05D006915 6.0e-10 67.8 69 53.6
COL.COLO4_07860 Corchorus olitorius HOM05D005816 ORTHO05D006915 6.0e-10 67.8 116 39.7
Oeu044626.1 Olea europaea HOM05D005816 ORTHO05D006915 6.0e-10 67.8 109 38.5
Hma1.2p1_0862F.1_g229870 Hydrangea macrophylla HOM05D005816 ORTHO05D006915 7.8e-10 67.4 115 42.6
Gohir.D11G006300 Gossypium hirsutum HOM05D005816 ORTHO05D006915 1.0e-09 67.0 103 42.7
Nn4g23710 Nelumbo nucifera HOM05D005816 ORTHO05D006915 1.0e-09 67.0 121 41.3
Nn3g17700 Nelumbo nucifera HOM05D005816 ORTHO05D006915 1.3e-09 66.6 68 51.5
QL01p001040 Quercus lobata HOM05D005816 ORTHO05D006915 1.3e-09 66.6 120 39.2
Lj4g0025770 Lotus japonicus HOM05D005816 ORTHO05D006915 1.7e-09 66.2 69 49.3
TAR629G1032 Trochodendron aralioides HOM05D005816 ORTHO05D006915 1.7e-09 66.2 121 43.8
FvH4_5g12751 Fragaria vesca HOM05D005816 ORTHO05D006915 2.3e-09 65.9 109 38.5
Glyma.05G013600 Glycine max HOM05D005816 ORTHO05D006915 2.3e-09 65.9 120 37.5
Gohir.A11G007200 Gossypium hirsutum HOM05D005816 ORTHO05D006915 2.3e-09 65.9 103 42.7
Gorai.007G007600 Gossypium raimondii HOM05D005816 ORTHO05D006915 2.3e-09 65.9 103 41.7
Lsat_1_v5_gn_4_112260 Lactuca sativa HOM05D005816 ORTHO05D006915 2.3e-09 65.9 70 51.4
Manes.05G118800 Manihot esculenta HOM05D005816 ORTHO05D006915 3.9e-09 65.1 113 44.2
Manes.06G073000 Manihot esculenta HOM05D005816 ORTHO05D006915 5.0e-09 64.7 116 39.7
Prupe.1G304500 Prunus persica HOM05D005816 ORTHO05D006915 5.0e-09 64.7 69 52.2
Thecc.03G027700 Theobroma cacao HOM05D005816 ORTHO05D006915 5.0e-09 64.7 110 43.6
TPR.G26768 Trifolium pratense HOM05D005816 ORTHO05D006915 5.0e-09 64.7 103 41.7
VMungo0720G2795 Vigna mungo HOM05D005816 ORTHO05D006915 6.6e-09 64.3 104 36.5
MD06G1210600 Malus domestica HOM05D005816 ORTHO05D006915 8.6e-09 63.9 75 50.7
Phvul.003G177600 Phaseolus vulgaris HOM05D005816 ORTHO05D006915 8.6e-09 63.9 102 41.2
Atru.chr9.746 Acer truncatum HOM05D005816 ORTHO05D006915 1.1e-08 63.5 68 52.9
RcHm_v2.0_Chr4g0435951 Rosa chinensis HOM05D005816 ORTHO05D006915 1.1e-08 63.5 67 49.3
Thecc.02G362100 Theobroma cacao HOM05D005816 ORTHO05D006915 1.1e-08 63.5 112 40.2
AT1G68795 Arabidopsis thaliana HOM05D005816 ORTHO05D006915 1.5e-08 63.2 75 52.0
Duzib251G0462 Durio zibethinus HOM05D005816 ORTHO05D006915 1.5e-08 63.2 119 37.8
FvH4_4g28190 Fragaria vesca HOM05D005816 ORTHO05D006915 1.5e-08 63.2 68 55.9
FAN12G1213 Fragaria x ananassa HOM05D005816 ORTHO05D006915 1.5e-08 63.2 68 55.9
FAN17G1568 Fragaria x ananassa HOM05D005816 ORTHO05D006915 1.5e-08 63.2 68 55.9
FAN18G0325 Fragaria x ananassa HOM05D005816 ORTHO05D006915 1.5e-08 63.2 109 37.6
Potri.008G115600 Populus trichocarpa HOM05D005816 ORTHO05D006915 1.5e-08 63.2 121 39.7
CSS0007623 Camellia sinensis var. sinensis HOM05D005816 ORTHO05D006915 1.9e-08 62.8 108 40.7
Migut.E00293 Erythranthe guttata HOM05D005816 ORTHO05D006915 1.9e-08 62.8 83 47.0
Lalb_Chr13g0302361 Lupinus albus HOM05D005816 ORTHO05D006915 1.9e-08 62.8 106 43.4
Medtr8g076990 Medicago truncatula HOM05D005816 ORTHO05D006915 1.9e-08 62.8 73 47.9
Prupe.5G216700 Prunus persica HOM05D005816 ORTHO05D006915 1.9e-08 62.8 79 46.8
Gohir.D07G042900 Gossypium hirsutum HOM05D005816 ORTHO05D006915 2.5e-08 62.4 69 50.7
Gorai.001G045900 Gossypium raimondii HOM05D005816 ORTHO05D006915 2.5e-08 62.4 69 50.7
Psat4g043720 Pisum sativum HOM05D005816 ORTHO05D006915 2.5e-08 62.4 96 40.6
Manes.14G096700 Manihot esculenta HOM05D005816 ORTHO05D006915 3.3e-08 62.0 109 43.1
AL2G27750 Arabidopsis lyrata HOM05D005816 ORTHO05D006915 4.3e-08 61.6 129 39.5
COL.COLO4_22708 Corchorus olitorius HOM05D005816 ORTHO05D006915 4.3e-08 61.6 117 41.0
Migut.L01100 Erythranthe guttata HOM05D005816 ORTHO05D006915 4.3e-08 61.6 106 39.6
CiPaw.16G083700 Carya illinoinensis HOM05D005816 ORTHO05D006915 5.6e-08 61.2 98 43.9
Eucgr.G02356 Eucalyptus grandis HOM05D005816 ORTHO05D006915 5.6e-08 61.2 68 54.4
Gohir.A13G071300 Gossypium hirsutum HOM05D005816 ORTHO05D006915 5.6e-08 61.2 67 47.8
Lalb_Chr21g0313371 Lupinus albus HOM05D005816 ORTHO05D006915 5.6e-08 61.2 119 36.1
Eucgr.B00694 Eucalyptus grandis HOM05D005816 ORTHO05D006915 7.3e-08 60.8 99 42.4
Lalb_Chr07g0178581 Lupinus albus HOM05D005816 ORTHO05D006915 7.3e-08 60.8 109 35.8
Potri.010G130400 Populus trichocarpa HOM05D005816 ORTHO05D006915 7.3e-08 60.8 120 38.3
Potri.012G059600 Populus trichocarpa HOM05D005816 ORTHO05D006915 7.3e-08 60.8 70 48.6
Cpa.g.sc13.61 Carica papaya HOM05D005816 ORTHO05D006915 9.5e-08 60.5 70 50.0
Sabra08G0087500 Salix brachista HOM05D005816 ORTHO05D006915 9.5e-08 60.5 124 38.7
Carub.0002s1536 Capsella rubella HOM05D005816 ORTHO05D006915 1.6e-07 59.7 129 36.4
MELO3C017284.2 Cucumis melo HOM05D005816 ORTHO05D006915 1.6e-07 59.7 72 47.2
PGR119G1376 Punica granatum HOM05D005816 ORTHO05D006915 1.6e-07 59.7 125 35.2
Aa31LG4G4260 Aethionema arabicum HOM05D005816 ORTHO05D006915 2.1e-07 59.3 67 46.3
Thhalv10019343m.g Eutrema salsugineum HOM05D005816 ORTHO05D006915 2.1e-07 59.3 130 39.2
FAN07G2890 Fragaria x ananassa HOM05D005816 ORTHO05D006915 2.1e-07 59.3 115 38.3
Gohir.A07G038800 Gossypium hirsutum HOM05D005816 ORTHO05D006915 2.1e-07 59.3 107 39.3
Gorai.013G079400 Gossypium raimondii HOM05D005816 ORTHO05D006915 2.1e-07 59.3 127 34.6
HanXRQChr16g0528861 Helianthus annuus HOM05D005816 ORTHO05D006915 2.1e-07 59.3 109 37.6
Lalb_Chr10g0099661 Lupinus albus HOM05D005816 ORTHO05D006915 2.1e-07 59.3 119 33.6
HanXRQChr05g0149681 Helianthus annuus HOM05D005816 ORTHO05D006915 2.8e-07 58.9 99 40.4
Lsat_1_v5_gn_4_19200 Lactuca sativa HOM05D005816 ORTHO05D006915 2.8e-07 58.9 70 50.0
CARHR061620 Cardamine hirsuta HOM05D005816 ORTHO05D006915 3.6e-07 58.5 124 38.7
Aqoxy3G00384 Aquilegia oxysepala HOM05D005816 ORTHO05D006915 4.7e-07 58.2 113 40.7
Sopen03g038660 Solanum pennellii HOM05D005816 ORTHO05D006915 4.7e-07 58.2 101 41.6
Duzib205G0672 Durio zibethinus HOM05D005816 ORTHO05D006915 6.2e-07 57.8 115 38.3
Thhalv10019753m.g Eutrema salsugineum HOM05D005816 ORTHO05D006915 6.2e-07 57.8 58 50.0
Oeu041876.1 Olea europaea HOM05D005816 ORTHO05D006915 6.2e-07 57.8 119 36.1
THA.LOC104821965 Tarenaya hassleriana HOM05D005816 ORTHO05D006915 6.2e-07 57.8 115 41.7
BcaB05g24412 Brassica carinata HOM05D005816 ORTHO05D006915 8.0e-07 57.4 72 52.8
CiPaw.15G126000 Carya illinoinensis HOM05D005816 ORTHO05D006915 8.0e-07 57.4 122 39.3
Dinv36900 Davidia involucrata HOM05D005816 ORTHO05D006915 8.0e-07 57.4 78 44.9
Gohir.D13G069300 Gossypium hirsutum HOM05D005816 ORTHO05D006915 8.0e-07 57.4 127 33.9
Sed0000064 Sechium edule HOM05D005816 ORTHO05D006915 8.0e-07 57.4 110 39.1
PGSC0003DMG400005703 Solanum tuberosum HOM05D005816 ORTHO05D006915 8.0e-07 57.4 101 41.6
HanXRQChr16g0502081 Helianthus annuus HOM05D005816 ORTHO05D006915 1.4e-06 56.6 73 43.8
MD14G1221300 Malus domestica HOM05D005816 ORTHO05D006915 1.4e-06 56.6 75 46.7
Manes.01G021100 Manihot esculenta HOM05D005816 ORTHO05D006915 1.4e-06 56.6 87 39.1
ATR0681G007 Amborella trichopoda HOM05D005816 ORTHO05D006915 2.3e-06 55.8 43 65.1
AL2G33800 Arabidopsis lyrata HOM05D005816 ORTHO05D006915 2.3e-06 55.8 67 47.8
AT1G73965 Arabidopsis thaliana HOM05D005816 ORTHO05D006915 2.3e-06 55.8 58 56.9
Duzib248G0754 Durio zibethinus HOM05D005816 ORTHO05D006915 2.3e-06 55.8 120 34.2
Lsat_1_v5_gn_3_58221 Lactuca sativa HOM05D005816 ORTHO05D006915 2.3e-06 55.8 111 36.0
Phvul.007G101800 Phaseolus vulgaris HOM05D005816 ORTHO05D006915 2.3e-06 55.8 120 32.5
SalBow8G0077 Salvia bowleyana HOM05D005816 ORTHO05D006915 2.3e-06 55.8 108 38.9
Sopen05g005720 Solanum pennellii HOM05D005816 ORTHO05D006915 2.3e-06 55.8 67 47.8
SGA_v2.0_scaffold59G20629 Striga asiatica HOM05D005816 ORTHO05D006915 2.3e-06 55.8 68 44.1
BcaC08g46328 Brassica carinata HOM05D005816 ORTHO05D006915 3.1e-06 55.5 126 38.9
BcaC08g46825 Brassica carinata HOM05D005816 ORTHO05D006915 3.1e-06 55.5 116 36.2
BolC6t39316H Brassica oleracea HOM05D005816 ORTHO05D006915 3.1e-06 55.5 126 38.9
Sp5g23900 Schrenkiella parvula HOM05D005816 ORTHO05D006915 3.1e-06 55.5 71 46.5
PGSC0003DMG400000830 Solanum tuberosum HOM05D005816 ORTHO05D006915 5.2e-06 54.7 107 38.3
Carub.0002s2074 Capsella rubella HOM05D005816 ORTHO05D006915 6.8e-06 54.3 58 51.7
Glyma.10G205100 Glycine max HOM05D005816 ORTHO05D006915 6.8e-06 54.3 119 33.6
ClCG01G005730 Citrullus lanatus HOM05D005816 ORTHO05D006915 8.9e-06 53.9 70 50.0
VMungo1215G1388 Vigna mungo HOM05D005816 ORTHO05D006915 8.9e-06 53.9 99 38.4


User provided reference genes

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