Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc11g0002930 Simmondsia chinensis HOM05D007408 ORTHO05D009325 4.4e-80 301.2 151 100.0
CANSAT64G2960 Cannabis sativa HOM05D007408 ORTHO05D009325 3.4e-24 115.5 171 46.2
PGR119G0146 Punica granatum HOM05D007408 ORTHO05D009325 6.5e-23 111.3 154 44.2
Atru.chr11.1432 Acer truncatum HOM05D007408 ORTHO05D009325 2.1e-21 106.3 162 45.1
Phvul.003G281600 Phaseolus vulgaris HOM05D007408 ORTHO05D009325 3.6e-21 105.5 158 43.7
Glyma.16G099500 Glycine max HOM05D007408 ORTHO05D009325 2.0e-19 99.8 158 42.4
RcHm_v2.0_Chr4g0436431 Rosa chinensis HOM05D007408 ORTHO05D009325 2.0e-19 99.8 150 46.0
Lalb_Chr20g0122411 Lupinus albus HOM05D007408 ORTHO05D009325 2.6e-19 99.4 154 42.9
VMungo0251G2162 Vigna mungo HOM05D007408 ORTHO05D009325 4.4e-19 98.6 152 42.1
MD13G1050800 Malus domestica HOM05D007408 ORTHO05D009325 7.4e-19 97.8 149 42.3
CiPaw.06G098200 Carya illinoinensis HOM05D007408 ORTHO05D009325 2.2e-18 96.3 155 43.2
TWI79G0837 Tripterygium wilfordii HOM05D007408 ORTHO05D009325 2.8e-18 95.9 158 39.9
Cc11_g10990 Coffea canephora HOM05D007408 ORTHO05D009325 8.2e-18 94.4 153 40.5
Prupe.1G301300 Prunus persica HOM05D007408 ORTHO05D009325 8.2e-18 94.4 155 40.0
Eucgr.B03072 Eucalyptus grandis HOM05D007408 ORTHO05D009325 1.1e-17 94.0 159 41.5
Cfa008792 Carpinus fangiana HOM05D007408 ORTHO05D009325 2.4e-17 92.8 153 41.8
Manes.06G075900 Manihot esculenta HOM05D007408 ORTHO05D009325 2.4e-17 92.8 149 43.0
SGA_v2.0_scaffold36G14509 Striga asiatica HOM05D007408 ORTHO05D009325 3.1e-17 92.4 157 42.0
Haze_11804 Corylus avellana HOM05D007408 ORTHO05D009325 4.1e-17 92.0 124 47.6
Oeu024124.1 Olea europaea HOM05D007408 ORTHO05D009325 2.6e-16 89.4 149 38.9
Ah.02g127260 Amaranthus hybridus HOM05D007408 ORTHO05D009325 3.5e-16 89.0 183 32.8
Cpa.g.sc1.248 Carica papaya HOM05D007408 ORTHO05D009325 7.7e-16 87.8 146 40.4
Sabra08G0084200 Salix brachista HOM05D007408 ORTHO05D009325 2.2e-15 86.3 120 45.0
Potri.008G111500 Populus trichocarpa HOM05D007408 ORTHO05D009325 3.8e-15 85.5 155 40.0
TPR.G24816 Trifolium pratense HOM05D007408 ORTHO05D009325 1.1e-14 84.0 150 42.0
FAN22G2286 Fragaria x ananassa HOM05D000227 ORTHO05D001491 1.9e-14 83.2 151 39.7
Medtr8g069910 Medicago truncatula HOM05D007408 ORTHO05D009325 1.9e-14 83.2 151 43.0
FAN07G2148 Fragaria x ananassa HOM05D000085 ORTHO05D000274 3.2e-14 82.4 121 43.8
FAN12G0389 Fragaria x ananassa HOM05D000085 ORTHO05D000274 3.2e-14 82.4 121 43.8
FAN17G1226 Fragaria x ananassa HOM05D000085 ORTHO05D000274 3.2e-14 82.4 121 43.8
Thecc.02G364900 Theobroma cacao HOM05D007408 ORTHO05D009325 4.2e-14 82.0 125 48.0
arahy.Tifrunner.gnm1.ann1.24G1QJ Arachis hypogaea HOM05D007408 ORTHO05D009325 7.2e-14 81.3 148 40.5
TAR629G0610 Trochodendron aralioides HOM05D007408 ORTHO05D009325 7.2e-14 81.3 148 35.8
DCAR_026703 Daucus carota HOM05D002818 ORTHO05D003244 1.6e-13 80.1 118 43.2
Solyc05g010130.1 Solanum lycopersicum HOM05D007408 ORTHO05D009325 3.6e-13 79.0 153 39.9
CsaV3_2G010890 Cucumis sativus L. HOM05D007408 ORTHO05D009325 6.1e-13 78.2 145 40.7
SalBow8G1270 Salvia bowleyana HOM05D007408 ORTHO05D009325 6.1e-13 78.2 155 38.1
SalBow8G3082 Salvia bowleyana HOM05D007408 ORTHO05D009325 6.1e-13 78.2 155 38.1
HanXRQChr15g0475971 Helianthus annuus HOM05D007408 ORTHO05D009325 1.4e-12 77.0 123 43.1
THA.LOC104822179 Tarenaya hassleriana HOM05D007408 ORTHO05D009325 1.8e-12 76.6 117 42.7
Migut.L01119 Erythranthe guttata HOM05D007408 ORTHO05D009325 2.3e-12 76.3 160 36.9
Lj4g0027659 Lotus japonicus HOM05D007408 ORTHO05D009325 2.3e-12 76.3 159 35.8
HanXRQChr12g0365241 Helianthus annuus HOM05D007408 ORTHO05D009325 4.0e-12 75.5 157 36.3
Ciclev10033573m.g Citrus clementina HOM05D007408 ORTHO05D009325 1.2e-11 73.9 111 45.0
HanXRQChr17g0551421 Helianthus annuus HOM05D007408 ORTHO05D009325 2.6e-11 72.8 123 40.7
Psat4g113200 Pisum sativum HOM05D007408 ORTHO05D009325 2.6e-11 72.8 127 44.1
THA.LOC104805235 Tarenaya hassleriana HOM05D007408 ORTHO05D009325 3.3e-11 72.4 146 37.0
Gohir.D12G176300 Gossypium hirsutum HOM05D007408 ORTHO05D009325 7.5e-11 71.2 127 41.7
Gorai.008G188700 Gossypium raimondii HOM05D007408 ORTHO05D009325 7.5e-11 71.2 127 41.7
Gohir.A12G173800 Gossypium hirsutum HOM05D007408 ORTHO05D009325 9.7e-11 70.9 130 40.0
AT3G25597 Arabidopsis thaliana HOM05D007408 ORTHO05D009325 3.7e-10 68.9 151 38.4
BcaC06g31130 Brassica carinata HOM05D007408 ORTHO05D009325 8.2e-10 67.8 121 40.5
Aqoxy3G03838 Aquilegia oxysepala HOM05D007408 ORTHO05D009325 1.1e-09 67.4 150 40.0
Manes.14G095101 Manihot esculenta HOM05D007408 ORTHO05D009325 1.1e-09 67.4 74 54.1
Carub.0005s0338 Capsella rubella HOM05D007408 ORTHO05D009325 1.4e-09 67.0 153 36.6
CARHR146570 Cardamine hirsuta HOM05D007408 ORTHO05D009325 1.8e-09 66.6 149 38.3
AT1G68700 Arabidopsis thaliana HOM05D007408 ORTHO05D009325 3.1e-09 65.9 133 34.6
Lsat_1_v5_gn_3_60200 Lactuca sativa HOM05D007408 ORTHO05D009325 3.1e-09 65.9 118 39.0
BcaC06g33976 Brassica carinata HOM05D007408 ORTHO05D009325 4.1e-09 65.5 149 38.3
BraA06t27184Z Brassica rapa HOM05D007408 ORTHO05D009325 5.3e-09 65.1 149 37.6
C07p34420 Brassica napus HOM05D007408 ORTHO05D009325 7.0e-09 64.7 149 37.6
A06p42710 Brassica napus HOM05D007408 ORTHO05D009325 9.1e-09 64.3 149 37.6
Thhalv10005058m.g Eutrema salsugineum HOM05D007408 ORTHO05D009325 9.1e-09 64.3 150 36.7
BcaB03g15828 Brassica carinata HOM05D007408 ORTHO05D009325 1.2e-08 63.9 136 33.8
CARHR061510 Cardamine hirsuta HOM05D007408 ORTHO05D009325 1.2e-08 63.9 140 31.4
C06p37420 Brassica napus HOM05D007408 ORTHO05D009325 7.7e-08 61.2 133 34.6
MELO3C020393.2 Cucumis melo HOM05D007408 ORTHO05D009325 7.7e-08 61.2 145 37.2
A08p27160 Brassica napus HOM05D007408 ORTHO05D009325 1.0e-07 60.8 119 37.0
Sp2g14870 Schrenkiella parvula HOM05D007408 ORTHO05D009325 1.0e-07 60.8 150 36.0
BcaB03g15446 Brassica carinata HOM05D007408 ORTHO05D009325 1.3e-07 60.5 136 32.4
A09p39710 Brassica napus HOM05D007408 ORTHO05D009325 2.2e-07 59.7 115 33.0
BraA09t39470Z Brassica rapa HOM05D007408 ORTHO05D009325 2.2e-07 59.7 115 33.0
C06p41170 Brassica napus HOM05D000085 ORTHO05D000274 2.9e-07 59.3 136 33.1
Carub.0001s2482 Capsella rubella HOM05D007408 ORTHO05D009325 2.9e-07 59.3 115 34.8
BcaC08g46321 Brassica carinata HOM05D000085 ORTHO05D000274 3.8e-07 58.9 136 32.4
A07p31850 Brassica napus HOM05D007408 ORTHO05D009325 3.8e-07 58.9 127 34.6
BolC6t39308H Brassica oleracea HOM05D000085 ORTHO05D000274 3.8e-07 58.9 136 32.4
CARHR025780 Cardamine hirsuta HOM05D007408 ORTHO05D009325 3.8e-07 58.9 129 34.9
Sp5g23800 Schrenkiella parvula HOM05D007408 ORTHO05D009325 3.8e-07 58.9 120 37.5
BcaC03g17274 Brassica carinata HOM05D007408 ORTHO05D009325 6.5e-07 58.2 148 33.8
A07p35100 Brassica napus HOM05D000085 ORTHO05D000274 6.5e-07 58.2 120 35.0
C02p52180 Brassica napus HOM05D007408 ORTHO05D009325 6.5e-07 58.2 148 33.8
C05p24760 Brassica napus HOM05D007408 ORTHO05D009325 6.5e-07 58.2 120 35.8
BolC2t11303H Brassica oleracea HOM05D007408 ORTHO05D009325 6.5e-07 58.2 148 33.8
BraA02t08410Z Brassica rapa HOM05D007408 ORTHO05D009325 6.5e-07 58.2 148 33.8
BraA07t30814Z Brassica rapa HOM05D007408 ORTHO05D009325 6.5e-07 58.2 127 34.6
BraA07t31103Z Brassica rapa HOM05D000085 ORTHO05D000274 6.5e-07 58.2 120 35.0
BolC6t38845H Brassica oleracea HOM05D000085 ORTHO05D000274 8.5e-07 57.8 130 33.8
BraA08t34661Z Brassica rapa HOM05D007408 ORTHO05D009325 8.5e-07 57.8 118 35.6
AL1G39610 Arabidopsis lyrata HOM05D007408 ORTHO05D009325 1.9e-06 56.6 118 34.7
AL5G14110 Arabidopsis lyrata HOM05D007408 ORTHO05D009325 1.9e-06 56.6 154 34.4
BcaC05g26429 Brassica carinata HOM05D007408 ORTHO05D009325 1.9e-06 56.6 120 35.0
C03p72700 Brassica napus HOM05D007408 ORTHO05D009325 1.9e-06 56.6 119 37.0
BolC3t19568H Brassica oleracea HOM05D007408 ORTHO05D009325 1.9e-06 56.6 119 37.0
Carub.0002s1524 Capsella rubella HOM05D007408 ORTHO05D009325 2.5e-06 56.2 124 32.3
A02p33920 Brassica napus HOM05D007408 ORTHO05D009325 3.2e-06 55.8 117 36.8
Sed0018728 Sechium edule HOM05D007408 ORTHO05D009325 4.2e-06 55.5 134 38.1
ECA233G1102 Erigeron canadensis HOM05D002818 ORTHO05D003244 5.5e-06 55.1 123 35.0


User provided reference genes

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