Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc11g0002760 Simmondsia chinensis HOM05D006853 ORTHO05D008906 1.1e-150 536.6 271 100.0
AUR62007823 Chenopodium quinoa HOM05D006853 ORTHO05D008906 5.7e-102 374.8 271 67.9
Ah.02g127470 Amaranthus hybridus HOM05D001046 ORTHO05D002934 6.5e-98 361.3 262 69.8
Hund25134 Selenicereus undatus HOM05D006853 ORTHO05D008906 6.5e-98 361.3 271 67.9
Lj6P771T55 Lonicera japonica HOM05D006853 ORTHO05D008906 8.2e-93 344.4 271 66.4
CSS0047872 Camellia sinensis var. sinensis HOM05D006853 ORTHO05D008906 6.9e-92 341.3 273 64.5
Nitab4.5_0000027g0460 Nicotiana tabacum HOM05D006853 ORTHO05D008906 1.5e-91 340.1 271 65.3
CSS0003455 Camellia sinensis var. sinensis HOM05D006853 ORTHO05D008906 2.2e-90 336.3 272 65.4
Nitab4.5_0010998g0020 Nicotiana tabacum HOM05D006853 ORTHO05D008906 5.0e-90 335.1 271 64.9
PGSC0003DMG400025119 Solanum tuberosum HOM05D006853 ORTHO05D008906 1.9e-89 333.2 271 64.2
Peaxi162Scf00188g00063 Petunia axillaris HOM05D006853 ORTHO05D008906 4.2e-89 332.0 271 63.8
Haze_23238 Corylus avellana HOM05D006853 ORTHO05D008906 5.5e-89 331.6 271 61.3
Sopen05g006060 Solanum pennellii HOM05D006853 ORTHO05D008906 1.2e-88 330.5 271 63.5
Solyc05g010290.3 Solanum lycopersicum HOM05D006853 ORTHO05D008906 2.7e-88 329.3 271 63.1
Actinidia31918 Actinidia chinensis HOM05D006853 ORTHO05D006634 3.6e-88 328.9 264 64.0
Oeu024136.2 Olea europaea HOM05D006853 ORTHO05D008906 7.9e-88 327.8 271 63.1
CAN.G184.17 Capsicum annuum HOM05D006853 ORTHO05D008906 1.4e-87 327.0 271 63.8
Oeu054577.1 Olea europaea HOM05D006853 ORTHO05D008906 3.9e-87 325.5 271 62.7
Manes.06G077700 Manihot esculenta HOM05D006853 ORTHO05D008906 2.0e-86 323.2 271 61.6
Duzib268G1722 Durio zibethinus HOM05D006853 ORTHO05D008906 2.6e-86 322.8 274 63.1
Cpa.g.sc53.10 Carica papaya HOM05D006853 ORTHO05D008906 3.3e-86 322.4 271 61.3
MELO3C005171.2 Cucumis melo HOM05D006853 ORTHO05D008906 3.3e-86 322.4 273 63.7
Sed0015072 Sechium edule HOM05D006853 ORTHO05D008906 3.3e-86 322.4 273 61.9
Thecc.02G317700 Theobroma cacao HOM05D006853 ORTHO05D008906 4.4e-86 322.0 271 62.0
Rhsim09G0117300 Rhododendron simsii HOM05D006853 ORTHO05D008906 5.7e-86 321.6 271 62.7
ClCG01G007410 Citrullus lanatus HOM05D006853 ORTHO05D008906 7.4e-86 321.2 273 61.9
Gohir.A03G107900 Gossypium hirsutum HOM05D006853 ORTHO05D008906 7.4e-86 321.2 271 60.9
CiPaw.06G096100 Carya illinoinensis HOM05D006853 ORTHO05D008906 1.7e-85 320.1 272 59.9
Oeu054573.1 Olea europaea HOM05D006853 ORTHO05D008906 2.2e-85 319.7 271 62.4
Oeu054575.1 Olea europaea HOM05D006853 ORTHO05D008906 2.2e-85 319.7 271 62.4
Gohir.D02G132900 Gossypium hirsutum HOM05D006853 ORTHO05D008906 3.7e-85 318.9 271 61.3
Hma1.2p1_0762F.1_g214380 Hydrangea macrophylla HOM05D006853 ORTHO05D008906 4.8e-85 318.5 272 64.3
COL.COLO4_27747 Corchorus olitorius HOM05D006853 ORTHO05D008906 8.2e-85 317.8 271 60.5
CsaV3_5G018880 Cucumis sativus L. HOM05D006853 ORTHO05D008906 8.2e-85 317.8 273 62.3
SalBow8G1387 Salvia bowleyana HOM05D006853 ORTHO05D008906 8.2e-85 317.8 271 58.3
SalBow8G0220 Salvia bowleyana HOM05D006853 ORTHO05D008906 1.4e-84 317.0 271 58.3
Ciclev10032464m.g Citrus clementina HOM05D006853 ORTHO05D008906 1.8e-84 316.6 271 62.4
Cc11_g11200 Coffea canephora HOM05D006853 ORTHO05D008906 2.4e-84 316.2 271 61.3
QL03p047845 Quercus lobata HOM05D006853 ORTHO05D008906 7.0e-84 314.7 270 61.9
Cfa009867 Carpinus fangiana HOM05D006853 ORTHO05D008906 9.1e-84 314.3 248 63.3
MSTRG.7709 Avicennia marina HOM05D006853 ORTHO05D008906 1.2e-83 313.9 271 58.3
Atru.chr11.1459 Acer truncatum HOM05D006853 ORTHO05D008906 4.5e-83 312.0 271 62.4
Atru.chr11.1493 Acer truncatum HOM05D006853 ORTHO05D008906 4.5e-83 312.0 271 62.4
Lsat_1_v5_gn_8_37640 Lactuca sativa HOM05D006853 ORTHO05D008906 5.9e-83 311.6 271 61.3
HanXRQChr08g0214781 Helianthus annuus HOM05D006853 ORTHO05D008906 3.8e-82 308.9 271 58.7
TWI31G0390 Tripterygium wilfordii HOM05D006853 ORTHO05D008906 1.1e-81 307.4 252 64.3
Potri.010G134600 Populus trichocarpa HOM05D006853 ORTHO05D008906 1.4e-81 307.0 272 59.6
Potri.008G110700 Populus trichocarpa HOM05D006853 ORTHO05D008906 5.5e-81 305.1 272 59.9
Sabra10G0103400 Salix brachista HOM05D006853 ORTHO05D008906 2.1e-80 303.1 272 58.8
TAR624G1108 Trochodendron aralioides HOM05D006853 ORTHO05D008906 8.0e-80 301.2 273 60.8
PGR102G0342 Punica granatum HOM05D006853 ORTHO05D008906 2.8e-77 292.7 271 56.1
CANSAT64G2393 Cannabis sativa HOM05D006853 ORTHO05D008906 4.8e-77 292.0 271 57.9
Migut.L01132 Erythranthe guttata HOM05D006853 ORTHO05D006634 8.2e-77 291.2 251 60.2
ECA233G2927 Erigeron canadensis HOM05D006853 ORTHO05D006634 2.0e-75 286.6 250 56.8
Prupe.1G299000 Prunus persica HOM05D006853 ORTHO05D006634 1.1e-73 280.8 239 62.8
Eucgr.B03092 Eucalyptus grandis HOM05D006853 ORTHO05D008906 1.9e-73 280.0 272 55.9
Aa31LG2G6790 Aethionema arabicum HOM05D006853 ORTHO05D008906 4.2e-73 278.9 273 55.7
Dinv16569 Davidia involucrata HOM05D000044 ORTHO05D006634 1.2e-72 277.3 214 65.4
THA.LOC104801842 Tarenaya hassleriana HOM05D006853 ORTHO05D008906 1.6e-72 276.9 273 57.5
PSO541G5551 Papaver somniferum HOM05D006853 ORTHO05D008906 4.7e-72 275.4 273 57.5
AT3G25545 Arabidopsis thaliana HOM05D006853 ORTHO05D008906 6.1e-72 275.0 273 56.0
Carub.0005s0328 Capsella rubella HOM05D006853 ORTHO05D008906 6.1e-72 275.0 274 55.5
PSO675G5986 Papaver somniferum HOM05D006853 ORTHO05D008906 8.0e-72 274.6 273 57.1
AL5G14010 Arabidopsis lyrata HOM05D006853 ORTHO05D008906 1.4e-71 273.9 273 55.3
MD16G1052100 Malus domestica HOM05D006853 ORTHO05D008906 2.3e-71 273.1 280 57.1
RcHm_v2.0_Chr4g0436821 Rosa chinensis HOM05D006853 ORTHO05D008906 6.7e-71 271.6 272 54.0
MD13G1053100 Malus domestica HOM05D006853 ORTHO05D008906 8.8e-71 271.2 280 55.7
BcaB07g30639 Brassica carinata HOM05D006853 ORTHO05D008906 1.2e-70 270.8 274 54.0
CARHR146460 Cardamine hirsuta HOM05D006853 ORTHO05D008906 1.2e-70 270.8 274 53.3
BcaC03g17267 Brassica carinata HOM05D006853 ORTHO05D008906 7.5e-70 268.1 276 54.7
BcaC03g17268 Brassica carinata HOM05D006853 ORTHO05D008906 7.5e-70 268.1 276 54.7
FvH4_4g28700 Fragaria vesca HOM05D006853 ORTHO05D008906 9.7e-70 267.7 276 54.7
C02p52120 Brassica napus HOM05D006853 ORTHO05D008906 1.3e-69 267.3 278 54.0
BolC2t11296H Brassica oleracea HOM05D006853 ORTHO05D008906 1.3e-69 267.3 278 54.0
FAN12G0570 Fragaria x ananassa HOM05D006853 ORTHO05D008906 1.3e-69 267.3 275 54.2
Thhalv10004778m.g Eutrema salsugineum HOM05D006853 ORTHO05D008906 1.7e-69 266.9 274 54.0
Sp2g14810 Schrenkiella parvula HOM05D006853 ORTHO05D008906 2.2e-69 266.5 274 53.6
BcaB07g30269 Brassica carinata HOM05D006853 ORTHO05D008906 6.3e-69 265.0 273 54.6
FAN07G1226 Fragaria x ananassa HOM05D006853 ORTHO05D006634 1.6e-67 260.4 272 54.4
Actinidia30174 Actinidia chinensis HOM05D006853 ORTHO05D008906 2.0e-67 260.0 199 65.3
HanXRQChr15g0469081 Helianthus annuus HOM05D006853 ORTHO05D008906 5.9e-67 258.5 218 58.7
SGA_v2.0_scaffold16G07849 Striga asiatica HOM05D006853 ORTHO05D008906 1.7e-66 256.9 273 51.3
A02p33840 Brassica napus HOM05D006853 ORTHO05D008906 2.7e-64 249.6 277 52.3
BraA02t08402Z Brassica rapa HOM05D006853 ORTHO05D008906 1.4e-63 247.3 277 52.3
unitig_8.g3212 Utricularia gibba HOM05D006853 ORTHO05D008906 1.4e-63 247.3 251 53.4
Nn7g37287 Nelumbo nucifera HOM05D006853 ORTHO05D008906 1.5e-62 243.8 273 52.0
VMungo1215G2951 Vigna mungo HOM05D006853 ORTHO05D008906 2.4e-60 236.5 269 48.0
Glyma.02G127200 Glycine max HOM05D006853 ORTHO05D008906 2.7e-59 233.0 271 51.3
Aqoxy5G01341 Aquilegia oxysepala HOM05D006853 ORTHO05D008906 8.6e-58 228.0 240 55.0
Phvul.002G082000 Phaseolus vulgaris HOM05D006853 ORTHO05D008906 5.5e-57 225.3 269 46.8
Ca_05156_v3 Cicer arietinum L. HOM05D006853 ORTHO05D008906 9.5e-57 224.6 270 48.1
Medtr5g049260 Medicago truncatula HOM05D006853 ORTHO05D008906 6.1e-56 221.9 272 49.6
Medtr5g049270 Medicago truncatula HOM05D006853 ORTHO05D008906 6.1e-56 221.9 272 49.6
Glyma.01G070150 Glycine max HOM05D006853 ORTHO05D008906 1.4e-55 220.7 271 49.4
ATR0721G025 Amborella trichopoda HOM05D006853 ORTHO05D008906 5.7e-54 215.3 273 45.4
SHI15728 Sapria himalayana HOM05D006853 ORTHO05D008906 2.7e-51 206.5 272 46.0
Lj2g0007836 Lotus japonicus HOM05D000044 ORTHO05D006634 8.6e-50 201.4 263 46.4
Lalb_Chr17g0341651 Lupinus albus HOM05D006853 ORTHO05D008906 1.5e-49 200.7 270 43.7
HPP92_020023 Vanilla planifolia HOM05D006853 ORTHO05D008906 1.2e-48 197.6 234 49.6
GSVIVG01010168001 Vitis vinifera HOM05D000044 ORTHO05D006634 5.2e-47 192.2 245 47.8
Hma1.2p1_0125F.1_g058490 Hydrangea macrophylla HOM05D006853 ORTHO05D008906 4.9e-45 185.7 161 60.2
SEGI_13208 Sequoiadendron giganteum HOM05D006853 ORTHO05D008906 4.6e-43 179.1 273 40.7
arahy.Tifrunner.gnm1.ann1.N8UYM2 Arachis hypogaea HOM05D006853 ORTHO05D008906 1.0e-42 177.9 274 41.6
arahy.Tifrunner.gnm1.ann1.QR8D6Y Arachis hypogaea HOM05D006853 ORTHO05D008906 7.3e-41 171.8 244 43.0
C09p31840 Brassica napus HOM05D006853 ORTHO05D008906 5.8e-38 162.2 200 46.0
BcaC04g21430 Brassica carinata HOM05D006853 ORTHO05D008906 1.3e-37 161.0 200 45.5
Pp3c1_39830 Physcomitrium patens HOM05D006853 ORTHO05D008906 2.5e-33 146.7 237 35.9
SMO164G0046 Selaginella moellendorffii HOM05D006853 ORTHO05D008906 3.7e-29 132.9 223 36.8
AagrBONN_evm.TU.Sc2ySwM_368.2648 Anthoceros agrestis HOM05D006853 ORTHO05D008906 1.9e-25 120.6 244 34.0
CDE03G0412 Ceratophyllum demersum HOM05D001926 ORTHO05D002121 4.3e-25 119.4 158 46.2
Os01g0219000 Oryza sativa ssp. japonica HOM05D006853 ORTHO05D008906 1.2e-24 117.9 223 37.2
Mapoly0008s0082 Marchantia polymorpha HOM05D006853 ORTHO05D008906 4.7e-24 115.9 245 33.1
Zm00001eb119820 Zea mays HOM05D006853 ORTHO05D008906 6.2e-24 115.5 240 35.8
HanXRQChr12g0364531 Helianthus annuus HOM05D006853 ORTHO05D008906 1.1e-23 114.8 109 58.7
AL5G13960 Arabidopsis lyrata HOM05D006853 ORTHO05D008906 2.0e-22 110.5 88 63.6
ATR0737G064 Amborella trichopoda HOM05D006853 ORTHO05D008906 1.6e-19 100.9 108 47.2
Psat2g098640 Pisum sativum HOM05D006853 ORTHO05D008906 1.5e-17 94.4 122 44.3
Psat1g127240 Pisum sativum HOM05D002500 ORTHO05D002587 6.9e-15 85.5 86 51.2
PSO478G3347 Papaver somniferum HOM05D006853 ORTHO05D008906 5.6e-09 65.9 45 66.7
GSVIVG01017445001 Vitis vinifera HOM05D000518 ORTHO05D001974 3.6e-08 63.2 62 50.0


User provided reference genes

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