Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc11g0002680 Simmondsia chinensis HOM05D007623 ORTHO05D009641 2.4e-129 466.8 229 100.0
Dinv34009 Davidia involucrata HOM05D007623 ORTHO05D009641 1.5e-62 245.0 286 46.2
Actinidia24041 Actinidia chinensis HOM05D007623 ORTHO05D009641 1.5e-57 228.4 274 47.8
Actinidia31923 Actinidia chinensis HOM05D007623 ORTHO05D009641 2.5e-57 227.6 276 48.2
Thecc.02G321100 Theobroma cacao HOM05D007623 ORTHO05D009641 4.7e-56 223.4 186 60.2
GSVIVG01010112001 Vitis vinifera HOM05D007623 ORTHO05D009641 6.1e-56 223.0 170 62.4
COL.COLO4_27779 Corchorus olitorius HOM05D007623 ORTHO05D009641 1.4e-55 221.9 168 63.7
Lj6A773T130 Lonicera japonica HOM05D007623 ORTHO05D009641 8.8e-55 219.2 170 61.2
vmacro01293 Vaccinium macrocarpon HOM05D000001 ORTHO05D000003 3.3e-54 217.2 276 46.4
Gorai.005G147900 Gossypium raimondii HOM05D007623 ORTHO05D009641 1.3e-53 215.3 193 57.0
EL10Ac6g14659 Beta vulgaris HOM05D007623 ORTHO05D009641 1.7e-53 214.9 199 55.3
Gohir.A03G106900 Gossypium hirsutum HOM05D007623 ORTHO05D009641 2.2e-53 214.5 193 57.0
Prupe.2G062100 Prunus persica HOM05D007623 ORTHO05D009641 2.2e-53 214.5 282 44.7
Cfa008839 Carpinus fangiana HOM05D007623 ORTHO05D009641 2.8e-53 214.2 200 54.5
CiPaw.06G095500 Carya illinoinensis HOM05D007623 ORTHO05D009641 2.8e-53 214.2 168 59.5
Rhsim12G0070700 Rhododendron simsii HOM05D007623 ORTHO05D009641 3.7e-53 213.8 157 65.6
FAN12G1349 Fragaria x ananassa HOM05D007623 ORTHO05D009641 1.4e-52 211.8 278 44.2
Manes.14G091100 Manihot esculenta HOM05D007623 ORTHO05D009641 1.4e-52 211.8 169 59.8
Haze_11851 Corylus avellana HOM05D007623 ORTHO05D009641 1.8e-52 211.5 200 54.0
SHI04831 Sapria himalayana HOM05D007623 ORTHO05D009641 1.8e-52 211.5 169 57.4
FvH4_4g29120 Fragaria vesca HOM05D007623 ORTHO05D009641 2.4e-52 211.1 278 43.9
CANSAT64G0130 Cannabis sativa HOM05D007623 ORTHO05D009641 3.1e-52 210.7 211 51.2
MD16G1054700 Malus domestica HOM05D007623 ORTHO05D009641 3.1e-52 210.7 169 58.6
Hund25149 Selenicereus undatus HOM05D007623 ORTHO05D009641 3.1e-52 210.7 170 56.5
MELO3C026661.2 Cucumis melo HOM05D007623 ORTHO05D009641 1.2e-51 208.8 285 42.5
Aqoxy1G01216 Aquilegia oxysepala HOM05D007623 ORTHO05D009641 2.7e-51 207.6 193 50.8
Prupe.7G020300 Prunus persica HOM05D007623 ORTHO05D009641 2.7e-51 207.6 169 59.2
CSS0034887 Camellia sinensis var. sinensis HOM05D007623 ORTHO05D009641 7.7e-51 206.1 267 45.3
AUR62007860 Chenopodium quinoa HOM05D007623 ORTHO05D009641 1.0e-50 205.7 174 55.2
CSS0048304 Camellia sinensis var. sinensis HOM05D007623 ORTHO05D009641 3.8e-50 203.8 267 44.9
Sed0026487 Sechium edule HOM05D007623 ORTHO05D009641 3.8e-50 203.8 284 40.8
FAN17G1802 Fragaria x ananassa HOM05D007623 ORTHO05D009641 5.0e-50 203.4 169 56.8
CsaV3_3G030580 Cucumis sativus L. HOM05D007623 ORTHO05D009641 6.5e-50 203.0 196 51.0
FAN22G0497 Fragaria x ananassa HOM05D007623 ORTHO05D009641 1.1e-49 202.2 278 42.4
RcHm_v2.0_Chr4g0437181 Rosa chinensis HOM05D007623 ORTHO05D009641 1.1e-49 202.2 170 57.1
AUR62003048 Chenopodium quinoa HOM05D007623 ORTHO05D009641 1.9e-49 201.4 200 51.5
Oeu019601.2 Olea europaea HOM05D007623 ORTHO05D009641 3.2e-49 200.7 170 57.1
Sabra10G0105800 Salix brachista HOM05D007623 ORTHO05D009641 4.2e-49 200.3 169 55.6
ClCG05G023480 Citrullus lanatus HOM05D007623 ORTHO05D009641 7.2e-49 199.5 169 55.6
HanXRQChr08g0215011 Helianthus annuus HOM05D007623 ORTHO05D009641 7.2e-49 199.5 169 56.2
ECA233G1899 Erigeron canadensis HOM05D000630 ORTHO05D001413 2.7e-48 197.6 180 55.0
Atru.chr11.1545 Acer truncatum HOM05D007623 ORTHO05D009641 8.0e-48 196.1 169 55.6
Lsat_1_v5_gn_6_31920 Lactuca sativa HOM05D007623 ORTHO05D009641 8.8e-47 192.6 215 45.1
Sopen00g002400 Solanum pennellii HOM05D007623 ORTHO05D009641 1.2e-46 192.2 169 52.1
PGSC0003DMG400019642 Solanum tuberosum HOM05D007623 ORTHO05D009641 3.4e-46 190.7 169 52.1
Migut.E00256 Erythranthe guttata HOM05D007623 ORTHO05D009641 9.8e-46 189.1 169 53.8
Nn1g03057 Nelumbo nucifera HOM05D007623 ORTHO05D009641 2.8e-45 187.6 175 54.3
Cc11_g11460 Coffea canephora HOM05D007623 ORTHO05D009641 3.7e-45 187.2 169 57.4
DCAR_023738 Daucus carota HOM05D007623 ORTHO05D009641 5.4e-44 183.3 170 55.9
Sp1g12290 Schrenkiella parvula HOM05D007623 ORTHO05D009641 1.2e-43 182.2 169 51.5
Ah.03g137460 Amaranthus hybridus HOM05D007623 ORTHO05D009641 1.1e-41 175.6 157 51.0
MD13G1055600 Malus domestica HOM05D007623 ORTHO05D009641 1.6e-40 171.8 138 58.7
THA.LOC104805220 Tarenaya hassleriana HOM05D007623 ORTHO05D009641 8.0e-40 169.5 167 46.7
BcaC05g25269 Brassica carinata HOM05D007623 ORTHO05D009641 1.8e-39 168.3 167 48.5
BcaB02g06459 Brassica carinata HOM05D007623 ORTHO05D009641 1.5e-38 165.2 190 42.6
SGA_v2.0_scaffold287G47196 Striga asiatica HOM05D007623 ORTHO05D009641 4.4e-38 163.7 157 47.1
AL1G25410 Arabidopsis lyrata HOM05D007623 ORTHO05D009641 7.5e-38 162.9 169 45.6
Aa31LG7G1940 Aethionema arabicum HOM05D007623 ORTHO05D009641 6.3e-37 159.8 176 40.9
ATR0048G027 Amborella trichopoda HOM05D007623 ORTHO05D009641 4.1e-36 157.1 152 47.4
Carub.0001s1335 Capsella rubella HOM05D007623 ORTHO05D009641 9.2e-36 156.0 170 44.1
HPP92_001379 Vanilla planifolia HOM05D007623 ORTHO05D009641 9.2e-36 156.0 159 47.8
A06p09730 Brassica napus HOM05D007623 ORTHO05D009641 2.5e-33 147.9 169 42.6
BraA06t24162Z Brassica rapa HOM05D007623 ORTHO05D009641 7.3e-33 146.4 169 42.0
C05p11430 Brassica napus HOM05D007623 ORTHO05D009641 3.6e-32 144.1 167 42.5
Thhalv10009738m.g Eutrema salsugineum HOM05D007623 ORTHO05D009641 8.0e-32 142.9 169 42.0
BolC5t29896H Brassica oleracea HOM05D007623 ORTHO05D009641 2.3e-31 141.4 167 42.5
TAR374G0443 Trochodendron aralioides HOM05D007623 ORTHO05D009641 3.1e-31 141.0 98 63.3
Gohir.D02G132000 Gossypium hirsutum HOM05D007623 ORTHO05D009641 4.4e-30 137.1 106 61.3
Peaxi162Scf00188g01015 Petunia axillaris HOM05D007623 ORTHO05D009641 1.4e-28 132.1 96 61.5
AT1G13630 Arabidopsis thaliana HOM05D007623 ORTHO05D009641 4.1e-28 130.6 130 49.2
Ciclev10031004m.g Citrus clementina HOM05D007623 ORTHO05D009641 3.5e-27 127.5 96 59.4
Zm00001eb045730 Zea mays HOM05D007623 ORTHO05D009641 1.0e-26 125.9 136 42.6
CAN.G680.12 Capsicum annuum HOM05D007623 ORTHO05D009641 3.0e-26 124.4 94 60.6
Nitab4.5_0000259g0170 Nicotiana tabacum HOM05D007623 ORTHO05D009641 8.0e-24 116.3 96 56.2
Nitab4.5_0011373g0020 Nicotiana tabacum HOM05D007623 ORTHO05D009641 2.3e-23 114.8 96 56.2
SEGI_39043 Sequoiadendron giganteum HOM05D007623 ORTHO05D009641 2.1e-19 101.7 152 34.2
Lsat_1_v5_gn_3_22320 Lactuca sativa HOM05D007623 ORTHO05D009641 7.8e-19 99.8 87 52.9
CARHR013990 Cardamine hirsuta HOM05D007623 ORTHO05D009641 3.6e-16 90.9 96 45.8
BcaB08g34697 Brassica carinata HOM05D007623 ORTHO05D009641 1.8e-15 88.6 100 46.0
Lalb_Chr02g0154661 Lupinus albus HOM05D007291 ORTHO05D009038 2.5e-09 68.2 175 21.7
HanXRQChr06g0182581 Helianthus annuus HOM05D007455 ORTHO05D009431 1.2e-08 65.9 166 26.5
BcaB06g28282 Brassica carinata HOM05D007623 ORTHO05D009641 1.6e-08 65.5 97 38.1
Manes.01G179300 Manihot esculenta HOM05D007455 ORTHO05D009431 1.6e-08 65.5 165 24.8
Aqoxy1G00452 Aquilegia oxysepala HOM05D007455 ORTHO05D009431 6.2e-08 63.5 157 26.8
SEGI_32122 Sequoiadendron giganteum HOM05D007291 ORTHO05D009038 6.2e-08 63.5 123 26.0
CSS0035807 Camellia sinensis var. sinensis HOM05D007455 ORTHO05D009431 8.1e-08 63.2 154 26.0
Manes.01G179100 Manihot esculenta HOM05D007455 ORTHO05D009431 8.1e-08 63.2 163 25.8
Prupe.4G237400 Prunus persica HOM05D007291 ORTHO05D009038 1.8e-07 62.0 157 22.9
RcHm_v2.0_Chr7g0231271 Rosa chinensis HOM05D007291 ORTHO05D009038 1.8e-07 62.0 166 21.1
Ah.14g088580 Amaranthus hybridus HOM05D007291 ORTHO05D009038 2.4e-07 61.6 175 24.6
CiPaw.13G022600 Carya illinoinensis HOM05D007595 ORTHO05D009570 3.1e-07 61.2 146 26.7
MELO3C035731.2 Cucumis melo HOM05D002890 ORTHO05D009847 3.1e-07 61.2 176 25.0
RcHm_v2.0_Chr7g0231291 Rosa chinensis HOM05D007291 ORTHO05D009038 5.2e-07 60.5 166 20.5
CsaV3_5G024140 Cucumis sativus L. HOM05D007291 ORTHO05D009038 8.9e-07 59.7 165 20.6
ClCG03G004730 Citrullus lanatus HOM05D002890 ORTHO05D009847 1.2e-06 59.3 176 24.4
ClCG01G008820 Citrullus lanatus HOM05D007291 ORTHO05D009038 1.5e-06 58.9 168 20.8
Dinv21881 Davidia involucrata HOM05D000104 ORTHO05D009920 2.0e-06 58.5 106 30.2
Gohir.D05G340000 Gossypium hirsutum HOM05D007291 ORTHO05D009038 3.4e-06 57.8 165 21.8
MSTRG.1303 Avicennia marina HOM05D007639 ORTHO05D009509 7.6e-06 56.6 162 24.1


User provided reference genes

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