Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc11g0002650 Simmondsia chinensis HOM05D003025 ORTHO05D003305 3.0e-252 874.8 465 100.0
Sc04g0007330 Simmondsia chinensis HOM05D003025 ORTHO05D003305 3.0e-87 326.6 494 44.7
EL10Ac6g14672 Beta vulgaris HOM05D003025 ORTHO05D003305 8.8e-79 298.5 490 41.2
Ah.03g138600 Amaranthus hybridus HOM05D003025 ORTHO05D003305 5.7e-70 269.2 520 37.9
AUR62007872 Chenopodium quinoa HOM05D003025 ORTHO05D003305 2.8e-64 250.4 517 37.7
AUR62003057 Chenopodium quinoa HOM05D003025 ORTHO05D003305 1.2e-62 245.0 544 35.3
TAR622G0187 Trochodendron aralioides HOM05D003025 ORTHO05D003305 1.5e-38 164.9 505 31.3
COL.COLO4_27800 Corchorus olitorius HOM05D003025 ORTHO05D003305 1.7e-34 151.4 390 32.1
CSS0010260 Camellia sinensis var. sinensis HOM05D003025 ORTHO05D003305 8.7e-34 149.1 443 30.5
GSVIVG01010102001 Vitis vinifera HOM05D003025 ORTHO05D003305 8.7e-34 149.1 492 31.3
TAR374G0527 Trochodendron aralioides HOM05D003025 ORTHO05D003305 4.3e-33 146.7 504 29.6
Hma1.2p1_0428F.1_g150820 Hydrangea macrophylla HOM05D003025 ORTHO05D003305 4.8e-32 143.3 442 28.7
Dinv15582 Davidia involucrata HOM05D003025 ORTHO05D003305 8.1e-32 142.5 462 33.3
Rhsim09G0122100 Rhododendron simsii HOM05D003025 ORTHO05D003305 1.1e-31 142.1 385 30.9
Dinv34020 Davidia involucrata HOM05D003025 ORTHO05D003305 1.2e-30 138.7 479 27.6
Actinidia07767 Actinidia chinensis HOM05D003025 ORTHO05D003305 2.0e-30 137.9 448 29.2
Actinidia19904 Actinidia chinensis HOM05D003025 ORTHO05D003305 5.8e-30 136.3 383 31.1
Lj6A773T133 Lonicera japonica HOM05D003025 ORTHO05D003305 1.2e-27 128.6 420 32.1
CiPaw.05G121600 Carya illinoinensis HOM05D003025 ORTHO05D003305 3.5e-27 127.1 519 29.5
Nn4g23540 Nelumbo nucifera HOM05D003025 ORTHO05D003305 3.0e-26 124.0 503 28.6
vmacro10474 Vaccinium macrocarpon HOM05D003025 ORTHO05D003305 6.7e-26 122.9 434 32.3
Duzib248G1661 Durio zibethinus HOM05D003025 ORTHO05D003305 1.1e-25 122.1 465 28.2
Migut.L01161 Erythranthe guttata HOM05D003025 ORTHO05D003305 1.9e-25 121.3 399 29.8
TWI31G1177 Tripterygium wilfordii HOM05D003025 ORTHO05D003305 3.3e-25 120.6 418 29.7
Actinidia31928 Actinidia chinensis HOM05D003025 ORTHO05D003305 4.3e-25 120.2 376 28.7
PGSC0003DMG400001936 Solanum tuberosum HOM05D003025 ORTHO05D003305 5.6e-25 119.8 512 27.3
Sopen04g001270 Solanum pennellii HOM05D003025 ORTHO05D003305 7.4e-25 119.4 450 26.9
Gohir.A03G106600 Gossypium hirsutum HOM05D003025 ORTHO05D003305 2.1e-24 117.9 402 28.9
PSO063G1603 Papaver somniferum HOM05D003025 ORTHO05D003305 2.1e-24 117.9 398 28.6
vmacro01298 Vaccinium macrocarpon HOM05D003025 ORTHO05D003305 2.1e-24 117.9 378 31.5
Gohir.D02G131800 Gossypium hirsutum HOM05D003025 ORTHO05D003305 2.8e-24 117.5 405 28.6
Solyc04g005290.3 Solanum lycopersicum HOM05D003025 ORTHO05D003305 6.2e-24 116.3 450 27.1
Thecc.02G322700 Theobroma cacao HOM05D003025 ORTHO05D003305 6.2e-24 116.3 527 25.8
CiPaw.06G095000 Carya illinoinensis HOM05D003025 ORTHO05D003305 8.1e-24 115.9 442 29.2
PSO782G5508 Papaver somniferum HOM05D003025 ORTHO05D003305 8.1e-24 115.9 391 30.2
CANSAT64G2528 Cannabis sativa HOM05D003025 ORTHO05D003305 1.4e-23 115.2 594 26.9
Cc11_g11550 Coffea canephora HOM05D003025 ORTHO05D003305 3.1e-23 114.0 416 27.9
Gorai.005G147700 Gossypium raimondii HOM05D003025 ORTHO05D003305 3.1e-23 114.0 405 28.6
Sabra08G0084400 Salix brachista HOM05D003025 ORTHO05D003305 3.1e-23 114.0 497 27.4
Potri.008G111800 Populus trichocarpa HOM05D003025 ORTHO05D003305 4.0e-23 113.6 457 31.7
Aa31LG2G6910 Aethionema arabicum HOM05D003025 ORTHO05D003305 1.2e-22 112.1 402 30.6
Gohir.A13G088100 Gossypium hirsutum HOM05D003025 ORTHO05D003305 1.2e-22 112.1 520 27.5
THA.LOC104824052 Tarenaya hassleriana HOM05D003025 ORTHO05D003305 2.6e-22 110.9 422 28.9
HanXRQChr12g0365071 Helianthus annuus HOM05D003025 ORTHO05D003305 3.4e-22 110.5 372 30.6
Gorai.013G097400 Gossypium raimondii HOM05D003025 ORTHO05D003305 4.5e-22 110.2 500 27.4
Gohir.D13G085500 Gossypium hirsutum HOM05D003025 ORTHO05D003305 1.3e-21 108.6 499 26.9
Duzib251G0179 Durio zibethinus HOM05D003025 ORTHO05D003305 2.9e-21 107.5 403 32.0
Lj3A1027T87 Lonicera japonica HOM05D003025 ORTHO05D003305 3.8e-21 107.1 390 26.9
Manes.14G090300 Manihot esculenta HOM05D003025 ORTHO05D003305 3.8e-21 107.1 439 28.5
THA.LOC104805213 Tarenaya hassleriana HOM05D003025 ORTHO05D003305 4.9e-21 106.7 528 27.7
ClCG08G010610 Citrullus lanatus HOM05D003025 ORTHO05D003305 6.4e-21 106.3 398 28.9
CSS0010060 Camellia sinensis var. sinensis HOM05D003025 ORTHO05D003305 8.4e-21 105.9 426 28.6
Sed0016639 Sechium edule HOM05D003025 ORTHO05D003305 8.4e-21 105.9 445 27.6
ClCG05G023550 Citrullus lanatus HOM05D003025 ORTHO05D003305 1.4e-20 105.1 455 27.3
Rhsim12G0071300 Rhododendron simsii HOM05D003025 ORTHO05D003305 1.9e-20 104.8 385 29.4
Oeu003749.3 Olea europaea HOM05D003025 ORTHO05D003305 3.2e-20 104.0 550 25.8
Thhalv10004181m.g Eutrema salsugineum HOM05D003025 ORTHO05D003305 4.2e-20 103.6 398 28.6
Nitab4.5_0001071g0040 Nicotiana tabacum HOM05D003025 ORTHO05D003305 7.1e-20 102.8 526 27.2
Potri.010G138100 Populus trichocarpa HOM05D003025 ORTHO05D003305 7.1e-20 102.8 139 47.5
CsaV3_5G033470 Cucumis sativus L. HOM05D003025 ORTHO05D003305 1.6e-19 101.7 390 28.7
MBI15_g31908_MAGBIO Magnolia biondii HOM05D003025 ORTHO05D003305 2.7e-19 100.9 402 29.4
AL5G13600 Arabidopsis lyrata HOM05D003025 ORTHO05D003305 3.5e-19 100.5 402 27.6
PGSC0003DMG400025716 Solanum tuberosum HOM05D003025 ORTHO05D003305 4.6e-19 100.1 425 33.2
Eucgr.G02421 Eucalyptus grandis HOM05D003025 ORTHO05D003305 7.9e-19 99.4 416 28.8
PGR102G2660 Punica granatum HOM05D003025 ORTHO05D003305 7.9e-19 99.4 394 28.7
Peaxi162Scf00188g01025 Petunia axillaris HOM05D003025 ORTHO05D003305 1.0e-18 99.0 423 28.4
arahy.Tifrunner.gnm1.ann1.161SS5 Arachis hypogaea HOM05D003025 ORTHO05D003305 2.3e-18 97.8 381 26.8
MELO3C011401.2 Cucumis melo HOM05D003025 ORTHO05D003305 5.1e-18 96.7 391 26.9
CARHR146220 Cardamine hirsuta HOM05D003025 ORTHO05D003305 8.7e-18 95.9 391 27.4
TWI79G0747 Tripterygium wilfordii HOM05D003025 ORTHO05D003305 8.7e-18 95.9 386 29.3
CsaV3_6G033910 Cucumis sativus L. HOM05D003025 ORTHO05D003305 1.1e-17 95.5 376 28.5
Sopen05g006590 Solanum pennellii HOM05D003025 ORTHO05D003305 1.1e-17 95.5 437 27.7
Sp2g14630 Schrenkiella parvula HOM05D003025 ORTHO05D003305 2.5e-17 94.4 385 27.8
Sed0001557 Sechium edule HOM05D003025 ORTHO05D003305 5.6e-17 93.2 394 28.2
Dinv38641 Davidia involucrata HOM05D003025 ORTHO05D003305 7.4e-17 92.8 496 25.4
arahy.Tifrunner.gnm1.ann1.8UFH9N Arachis hypogaea HOM05D003025 ORTHO05D003305 9.6e-17 92.4 390 26.2
MSTRG.7727 Avicennia marina HOM05D003025 ORTHO05D003305 1.3e-16 92.0 480 27.5
Oeu024157.1 Olea europaea HOM05D003025 ORTHO05D003305 2.1e-16 91.3 75 60.0
Oeu062245.1 Olea europaea HOM05D003025 ORTHO05D003305 2.1e-16 91.3 425 28.7
VMungo0251G3127 Vigna mungo HOM05D003025 ORTHO05D003305 2.8e-16 90.9 373 28.4
Carub.0005s0297 Capsella rubella HOM05D003025 ORTHO05D003305 4.8e-16 90.1 391 28.4
Sed0017206 Sechium edule HOM05D003025 ORTHO05D003305 4.8e-16 90.1 444 28.2
SGA_v2.0_scaffold287G47189 Striga asiatica HOM05D003025 ORTHO05D003305 4.8e-16 90.1 306 29.1
MD13G1056500 Malus domestica HOM05D003025 ORTHO05D003305 6.2e-16 89.7 668 24.1
Manes.06G079500 Manihot esculenta HOM05D003025 ORTHO05D003305 8.1e-16 89.4 407 27.3
Gohir.D12G162800 Gossypium hirsutum HOM05D003025 ORTHO05D003305 1.1e-15 89.0 407 25.6
Nitab4.5_0002491g0030 Nicotiana tabacum HOM05D003025 ORTHO05D003305 1.1e-15 89.0 546 26.2
Sabra10G0106400 Salix brachista HOM05D003025 ORTHO05D003305 1.8e-15 88.2 466 27.0
Medtr5g047930 Medicago truncatula HOM05D003025 ORTHO05D003305 2.4e-15 87.8 398 25.6
Prupe.1G293500 Prunus persica HOM05D003025 ORTHO05D003305 2.4e-15 87.8 466 26.4
VMungo1215G0401 Vigna mungo HOM05D003025 ORTHO05D003305 3.1e-15 87.4 410 25.9
AT2G03810 Arabidopsis thaliana HOM05D003025 ORTHO05D003305 4.0e-15 87.0 393 26.0
Gorai.008G175400 Gossypium raimondii HOM05D003025 ORTHO05D003305 4.0e-15 87.0 402 26.1
Glyma.01G064900 Glycine max HOM05D003025 ORTHO05D003305 5.3e-15 86.7 423 31.9
Glyma.02G122700 Glycine max HOM05D003025 ORTHO05D003305 5.3e-15 86.7 384 31.5
DCAR_030058 Daucus carota HOM05D003025 ORTHO05D003305 9.0e-15 85.9 399 25.8
Nitab4.5_0009153g0010 Nicotiana tabacum HOM05D003025 ORTHO05D003305 9.0e-15 85.9 423 25.1
TPR.G38556 Trifolium pratense HOM05D003025 ORTHO05D003305 9.0e-15 85.9 382 28.3
BcaC04g21446 Brassica carinata HOM05D003025 ORTHO05D003305 1.2e-14 85.5 372 28.2
Psat2g085960 Pisum sativum HOM05D003025 ORTHO05D003305 1.2e-14 85.5 397 28.0
SGA_v2.0_scaffold16G07826 Striga asiatica HOM05D003025 ORTHO05D003305 1.2e-14 85.5 389 26.7
MSTRG.13475 Avicennia marina HOM05D003025 ORTHO05D003305 2.0e-14 84.7 472 27.5
BolC7t43953H Brassica oleracea HOM05D003025 ORTHO05D003305 2.6e-14 84.3 381 28.1
Phvul.003G280500 Phaseolus vulgaris HOM05D003025 ORTHO05D003305 2.6e-14 84.3 384 26.6
HanXRQChr08g0215591 Helianthus annuus HOM05D003025 ORTHO05D003305 3.4e-14 84.0 528 25.9
PSO478G4016 Papaver somniferum HOM05D003025 ORTHO05D003305 3.4e-14 84.0 395 27.3
Peaxi162Scf00026g00314 Petunia axillaris HOM05D003025 ORTHO05D003305 4.5e-14 83.6 505 25.3
A06p42840 Brassica napus HOM05D003025 ORTHO05D003305 7.6e-14 82.8 372 28.5
unitig_8.g3969 Utricularia gibba HOM05D003025 ORTHO05D003305 7.6e-14 82.8 74 54.1
C09p31660 Brassica napus HOM05D003025 ORTHO05D003305 1.0e-13 82.4 374 28.3
BolC9t56021H Brassica oleracea HOM05D003025 ORTHO05D003305 1.0e-13 82.4 374 28.3
MD16G1055400 Malus domestica HOM05D003025 ORTHO05D003305 1.0e-13 82.4 579 24.4
ECA233G1104 Erigeron canadensis HOM05D003025 ORTHO05D003305 1.3e-13 82.0 448 25.0
Gohir.A12G159500 Gossypium hirsutum HOM05D003025 ORTHO05D003305 1.3e-13 82.0 402 25.4
Lsat_1_v5_gn_8_37061 Lactuca sativa HOM05D003025 ORTHO05D003305 1.7e-13 81.6 396 26.3
BcaC06g31142 Brassica carinata HOM05D003025 ORTHO05D003305 2.2e-13 81.3 381 29.1
C02p51790 Brassica napus HOM05D003025 ORTHO05D003305 2.2e-13 81.3 380 28.4
HanXRQChr17g0568661 Helianthus annuus HOM05D003025 ORTHO05D003305 2.2e-13 81.3 124 38.7
unitig_62.g23701 Utricularia gibba HOM05D003025 ORTHO05D003305 2.2e-13 81.3 74 58.1
PSO017G6048 Papaver somniferum HOM05D003025 ORTHO05D003305 4.9e-13 80.1 393 27.0
CDE10G0686 Ceratophyllum demersum HOM05D003025 ORTHO05D003305 6.5e-13 79.7 53 66.0
Lalb_Chr10g0099151 Lupinus albus HOM05D003025 ORTHO05D003305 6.5e-13 79.7 56 64.3
Lj2g0017874 Lotus japonicus HOM05D003025 ORTHO05D003305 8.4e-13 79.3 370 26.8
Os04g0467100 Oryza sativa ssp. japonica HOM05D003025 ORTHO05D003305 1.4e-12 78.6 52 65.4
THA.LOC104801838 Tarenaya hassleriana HOM05D003025 ORTHO05D003305 1.4e-12 78.6 445 24.5
HPP92_018243 Vanilla planifolia HOM05D003025 ORTHO05D003305 1.4e-12 78.6 56 62.5
Actinidia13406 Actinidia chinensis HOM05D003025 ORTHO05D003305 1.9e-12 78.2 322 25.2
BraA06t27196Z Brassica rapa HOM05D003025 ORTHO05D003305 2.5e-12 77.8 388 27.1
Nitab4.5_0001196g0010 Nicotiana tabacum HOM05D003025 ORTHO05D003305 2.5e-12 77.8 487 29.0
Oeu021806.1 Olea europaea HOM05D003025 ORTHO05D003305 2.5e-12 77.8 409 25.9
SGA_v2.0_scaffold59G20657 Striga asiatica HOM05D003025 ORTHO05D003305 4.2e-12 77.0 275 32.4
ATR0691G160 Amborella trichopoda HOM05D003025 ORTHO05D003305 5.5e-12 76.6 397 26.4
Zm00001eb080280 Zea mays HOM05D041475 ORTHO05D003305 7.1e-12 76.3 52 65.4
BcaB07g30644 Brassica carinata HOM05D003025 ORTHO05D003305 1.6e-11 75.1 372 26.3
MBI14_g31150_MAGBIO Magnolia biondii HOM05D003025 ORTHO05D003305 1.6e-11 75.1 495 28.9
MSTRG.781 Avicennia marina HOM05D003025 ORTHO05D003305 2.7e-11 74.3 117 41.9
Phvul.003G038300 Phaseolus vulgaris HOM05D003025 ORTHO05D003305 4.6e-11 73.6 216 32.4
Lalb_Chr04g0255461 Lupinus albus HOM05D003025 ORTHO05D003305 6.0e-11 73.2 208 30.3
Lalb_Chr17g0341461 Lupinus albus HOM05D003025 ORTHO05D003305 6.0e-11 73.2 80 52.5
Hund09959 Selenicereus undatus HOM05D003025 ORTHO05D003305 1.0e-10 72.4 72 51.4
unitig_52.g17161 Utricularia gibba HOM05D003025 ORTHO05D003305 1.3e-10 72.0 183 32.2
ECA234G4845 Erigeron canadensis HOM05D003025 ORTHO05D003305 2.3e-10 71.2 387 26.6
SEGI_24332 Sequoiadendron giganteum HOM05D066507 ORTHO05D003305 3.0e-10 70.9 52 59.6
GSVIVG01008155001 Vitis vinifera HOM05D003025 ORTHO05D003305 5.1e-10 70.1 412 26.5
unitig_22.g5562 Utricularia gibba HOM05D003025 ORTHO05D003305 6.7e-10 69.7 402 26.1
Ca_05068_v3 Cicer arietinum L. HOM05D003025 ORTHO05D003305 1.1e-09 68.9 382 25.7
HanXRQChr16g0528681 Helianthus annuus HOM05D003025 ORTHO05D003305 1.1e-09 68.9 292 29.1
Hma1.2p1_0060F.1_g032730 Hydrangea macrophylla HOM05D003025 ORTHO05D003305 1.5e-09 68.6 118 39.0
FvH4_4g29290 Fragaria vesca HOM05D003025 ORTHO05D003305 1.9e-09 68.2 55 63.6
FAN17G1716 Fragaria x ananassa HOM05D003025 ORTHO05D003305 1.9e-09 68.2 55 63.6
FAN22G0063 Fragaria x ananassa HOM05D003025 ORTHO05D003305 1.9e-09 68.2 55 63.6
CDE10G0152 Ceratophyllum demersum HOM05D003025 ORTHO05D003305 3.3e-09 67.4 387 27.9
FAN12G3072 Fragaria x ananassa HOM05D003025 ORTHO05D003305 3.3e-09 67.4 55 63.6
Ciclev10021731m.g Citrus clementina HOM05D003025 ORTHO05D003305 4.3e-09 67.0 147 36.1
Carub.0001s1338 Capsella rubella HOM05D003025 ORTHO05D003305 5.7e-09 66.6 249 30.1
Gorai.001G067100 Gossypium raimondii HOM05D003025 ORTHO05D003305 5.7e-09 66.6 178 32.6
Migut.E00253 Erythranthe guttata HOM05D003025 ORTHO05D003305 1.3e-08 65.5 412 26.5
Gohir.A07G058700 Gossypium hirsutum HOM05D003025 ORTHO05D003305 1.3e-08 65.5 177 32.8
Os02g0582100 Oryza sativa ssp. japonica HOM05D003025 ORTHO05D003305 1.6e-08 65.1 271 29.2
MSTRG.780 Avicennia marina HOM05D003025 ORTHO05D003305 2.1e-08 64.7 70 44.3
Haze_11858 Corylus avellana HOM05D003025 ORTHO05D003305 2.8e-08 64.3 401 25.2
Cfa008850 Carpinus fangiana HOM05D004085 ORTHO05D005189 4.8e-08 63.5 405 26.4
FAN13G2721 Fragaria x ananassa HOM05D003025 ORTHO05D003305 4.8e-08 63.5 75 40.0
Gohir.D07G063600 Gossypium hirsutum HOM05D003025 ORTHO05D003305 6.3e-08 63.2 177 32.2
Lsat_1_v5_gn_3_105000 Lactuca sativa HOM05D003025 ORTHO05D003305 6.3e-08 63.2 199 32.2
Aqoxy3G03750 Aquilegia oxysepala HOM05D003025 ORTHO05D003305 8.2e-08 62.8 552 24.5
Prupe.5G210100 Prunus persica HOM05D003025 ORTHO05D003305 8.2e-08 62.8 150 35.3
FAN18G0971 Fragaria x ananassa HOM05D003025 ORTHO05D003305 1.1e-07 62.4 75 40.0
FvH4_5g13400 Fragaria vesca HOM05D003025 ORTHO05D003305 1.4e-07 62.0 75 40.0
CANSAT80G0192 Cannabis sativa HOM05D003025 ORTHO05D003305 3.1e-07 60.8 374 23.3
MD06G1205800 Malus domestica HOM05D003025 ORTHO05D003305 4.1e-07 60.5 149 29.5
RcHm_v2.0_Chr4g0437341 Rosa chinensis HOM05D003025 ORTHO05D003305 4.1e-07 60.5 154 35.1
TAR629G0229 Trochodendron aralioides HOM05D007687 ORTHO05D009692 4.1e-07 60.5 57 52.6
RcHm_v2.0_Chr7g0183741 Rosa chinensis HOM05D003025 ORTHO05D003305 6.9e-07 59.7 146 31.5
Zm00001eb245390 Zea mays HOM05D003025 ORTHO05D003305 6.9e-07 59.7 51 56.9
HanXRQChr15g0475601 Helianthus annuus HOM05D003025 ORTHO05D003305 9.0e-07 59.3 382 24.1
HPP92_015551 Vanilla planifolia HOM05D003025 ORTHO05D003305 1.2e-06 58.9 400 21.2
PGR119G1479 Punica granatum HOM05D003025 ORTHO05D003305 1.5e-06 58.5 352 25.3
unitig_21.g20865 Utricularia gibba HOM05D001307 ORTHO05D001158 1.5e-06 58.5 271 26.9
Manes.14G089200 Manihot esculenta HOM05D041365 ORTHO05D034088 2.0e-06 58.2 109 35.8
BcaB02g06463 Brassica carinata HOM05D003025 ORTHO05D003305 2.6e-06 57.8 368 27.7
Cpa.g.sc1.169 Carica papaya HOM05D003025 ORTHO05D003305 3.4e-06 57.4 49 55.1
CDE02G2647 Ceratophyllum demersum HOM05D003025 ORTHO05D003305 5.9e-06 56.6 77 41.6
MD14G1216700 Malus domestica HOM05D003025 ORTHO05D003305 5.9e-06 56.6 146 32.9
Atru.chr11.1558 Acer truncatum HOM05D003025 ORTHO05D003305 1.0e-05 55.8 53 54.7


User provided reference genes

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