Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc11g0002570 Simmondsia chinensis HOM05D004533 ORTHO05D005347 1.9e-146 522.7 313 100.0
QL03p073504 Quercus lobata HOM05D004533 ORTHO05D005347 5.1e-38 162.5 332 48.8
Eucgr.B03139 Eucalyptus grandis HOM05D004533 ORTHO05D005347 2.5e-37 160.2 336 51.5
Dinv20147 Davidia involucrata HOM05D004533 ORTHO05D005347 1.3e-36 157.9 325 49.8
Manes.01G025900 Manihot esculenta HOM05D004533 ORTHO05D005347 8.1e-36 155.2 341 46.6
Gohir.D02G131100 Gossypium hirsutum HOM05D004533 ORTHO05D005347 1.1e-35 154.8 337 48.1
Prupe.1G290400 Prunus persica HOM05D004533 ORTHO05D005347 1.4e-35 154.5 347 47.6
Gohir.D13G084000 Gossypium hirsutum HOM05D004533 ORTHO05D005347 2.4e-35 153.7 342 47.4
Gorai.013G095800 Gossypium raimondii HOM05D004533 ORTHO05D005347 2.4e-35 153.7 342 47.4
Duzib248G0866 Durio zibethinus HOM05D004533 ORTHO05D005347 5.3e-35 152.5 339 47.8
Gohir.A13G084500 Gossypium hirsutum HOM05D004533 ORTHO05D005347 1.5e-34 151.0 342 46.8
Gohir.A03G105900 Gossypium hirsutum HOM05D004533 ORTHO05D005347 2.0e-34 150.6 337 41.2
Haze_11876 Corylus avellana HOM05D004533 ORTHO05D005347 4.5e-34 149.4 342 48.2
Cc11_g11730 Coffea canephora HOM05D004533 ORTHO05D005347 5.8e-34 149.1 325 46.8
Gorai.005G147000 Gossypium raimondii HOM05D004533 ORTHO05D005347 5.5e-32 142.5 337 46.6
Sc04g0007440 Simmondsia chinensis HOM05D004533 ORTHO05D005347 9.3e-32 141.7 305 47.5
Medtr5g046750 Medicago truncatula HOM05D004533 ORTHO05D005347 2.7e-31 140.2 319 49.2
Manes.05G112100 Manihot esculenta HOM05D004533 ORTHO05D005347 1.8e-30 137.5 340 44.1
Thecc.02G326400 Theobroma cacao HOM05D004533 ORTHO05D005347 1.8e-30 137.5 344 45.1
MD16G1058700 Malus domestica HOM05D004533 ORTHO05D005347 5.1e-30 136.0 339 45.4
Cpa.g.sc1.160 Carica papaya HOM05D004533 ORTHO05D005347 6.7e-30 135.6 338 47.0
Ciclev10032087m.g Citrus clementina HOM05D004533 ORTHO05D005347 3.3e-29 133.3 331 43.2
Atru.chr11.1592 Acer truncatum HOM05D004533 ORTHO05D005347 4.3e-29 132.9 337 47.2
Psat2g098360 Pisum sativum HOM05D004533 ORTHO05D005347 1.3e-28 131.3 326 45.4
Sabra10G0118800 Salix brachista HOM05D004533 ORTHO05D005347 1.3e-28 131.3 350 43.1
Duzib251G0596 Durio zibethinus HOM05D004533 ORTHO05D005347 1.6e-28 131.0 344 42.4
TWI75G1153 Tripterygium wilfordii HOM05D004533 ORTHO05D005347 2.8e-28 130.2 306 46.4
CiPaw.05G123000 Carya illinoinensis HOM05D004533 ORTHO05D005347 6.2e-28 129.0 344 42.4
MSTRG.2297 Avicennia marina HOM05D004533 ORTHO05D005347 8.2e-28 128.6 335 36.4
Gorai.008G175700 Gossypium raimondii HOM05D004533 ORTHO05D005347 1.1e-27 128.3 303 38.6
Duzib268G0904 Durio zibethinus HOM05D004533 ORTHO05D005347 1.4e-27 127.9 343 39.4
Lj2g0015000 Lotus japonicus HOM05D004533 ORTHO05D005347 1.4e-27 127.9 340 45.3
Gohir.D12G163100 Gossypium hirsutum HOM05D004533 ORTHO05D005347 1.8e-27 127.5 290 46.2
Potri.010G154200 Populus trichocarpa HOM05D004533 ORTHO05D005347 2.4e-27 127.1 351 41.6
Aqoxy3G03701 Aquilegia oxysepala HOM05D004533 ORTHO05D005347 4.0e-27 126.3 343 43.1
TAR371G0131 Trochodendron aralioides HOM05D004533 ORTHO05D005347 2.0e-26 124.0 312 46.8
Ca_05043_v3 Cicer arietinum L. HOM05D004533 ORTHO05D005347 3.4e-26 123.2 315 45.4
Ca_19594_v3 Cicer arietinum L. HOM05D004533 ORTHO05D005347 3.4e-26 123.2 315 45.4
MD13G1059400 Malus domestica HOM05D004533 ORTHO05D005347 4.5e-26 122.9 334 41.6
EL10Ac6g15027 Beta vulgaris HOM05D004533 ORTHO05D005347 1.0e-25 121.7 287 36.6
Lalb_Chr17g0341371 Lupinus albus HOM05D004533 ORTHO05D005347 1.0e-25 121.7 323 46.7
Sed0020971 Sechium edule HOM05D004533 ORTHO05D005347 1.0e-25 121.7 343 34.7
CSS0048067 Camellia sinensis var. sinensis HOM05D004533 ORTHO05D005347 1.3e-25 121.3 329 45.9
Cfa008857 Carpinus fangiana HOM05D004533 ORTHO05D005347 1.7e-25 120.9 342 43.6
MELO3C011411.2 Cucumis melo HOM05D004533 ORTHO05D005347 1.7e-25 120.9 346 34.1
vmacro01308 Vaccinium macrocarpon HOM05D004533 ORTHO05D005347 1.7e-25 120.9 323 41.2
Potri.008G098200 Populus trichocarpa HOM05D004533 ORTHO05D005347 2.9e-25 120.2 347 41.5
TPR.G38582 Trifolium pratense HOM05D004533 ORTHO05D005347 2.9e-25 120.2 322 46.0
TAR374G1471 Trochodendron aralioides HOM05D004533 ORTHO05D005347 2.9e-25 120.2 273 39.9
Gohir.A12G159800 Gossypium hirsutum HOM05D004533 ORTHO05D005347 4.9e-25 119.4 291 47.1
TWI79G0987 Tripterygium wilfordii HOM05D004533 ORTHO05D005347 4.9e-25 119.4 328 43.9
CiPaw.06G093700 Carya illinoinensis HOM05D004533 ORTHO05D005347 6.5e-25 119.0 351 45.0
Nn4g23503 Nelumbo nucifera HOM05D004533 ORTHO05D005347 6.5e-25 119.0 350 42.0
Hma1.2p1_3075F.1_g332390 Hydrangea macrophylla HOM05D004533 ORTHO05D005347 1.1e-24 118.2 337 37.4
Phvul.003G039500 Phaseolus vulgaris HOM05D004533 ORTHO05D005347 1.1e-24 118.2 360 41.9
TWI31G0640 Tripterygium wilfordii HOM05D004533 ORTHO05D005347 1.1e-24 118.2 314 44.9
TAR629G1049 Trochodendron aralioides HOM05D004533 ORTHO05D005347 1.1e-24 118.2 342 35.7
ClCG08G010520 Citrullus lanatus HOM05D004533 ORTHO05D005347 1.9e-24 117.5 348 33.6
Dinv34043 Davidia involucrata HOM05D004533 ORTHO05D005347 4.2e-24 116.3 310 45.2
CsaV3_6G033770 Cucumis sativus L. HOM05D004533 ORTHO05D005347 1.2e-23 114.8 344 33.7
Rhsim09G0125000 Rhododendron simsii HOM05D004533 ORTHO05D005347 2.1e-23 114.0 324 46.6
Lalb_Chr10g0099071 Lupinus albus HOM05D004533 ORTHO05D005347 4.6e-23 112.8 337 46.3
Oeu020361.1 Olea europaea HOM05D004533 ORTHO05D005347 1.0e-22 111.7 294 39.1
COL.COLO4_27845 Corchorus olitorius HOM05D004533 ORTHO05D005347 1.8e-22 110.9 341 43.7
Ah.03g138730 Amaranthus hybridus HOM05D004533 ORTHO05D005347 3.0e-22 110.2 329 36.8
Rhsim12G0073600 Rhododendron simsii HOM05D004533 ORTHO05D005347 3.9e-22 109.8 323 37.5
Sabra08G0074200 Salix brachista HOM05D004533 ORTHO05D005347 1.5e-21 107.8 334 41.9
Glyma.01G063800 Glycine max HOM05D004533 ORTHO05D005347 3.3e-21 106.7 367 39.5
Oeu048133.1 Olea europaea HOM05D004533 ORTHO05D005347 3.3e-21 106.7 303 41.6
Oeu048134.1 Olea europaea HOM05D004533 ORTHO05D005347 3.3e-21 106.7 303 41.6
Peaxi162Scf00175g00062 Petunia axillaris HOM05D004533 ORTHO05D005347 3.3e-21 106.7 337 38.9
Actinidia26533 Actinidia chinensis HOM05D004533 ORTHO05D005347 9.7e-21 105.1 317 44.8
MSTRG.13457 Avicennia marina HOM05D004533 ORTHO05D005347 1.6e-20 104.4 330 39.7
FAN07G1881 Fragaria x ananassa HOM05D004533 ORTHO05D005347 2.8e-20 103.6 332 41.6
THA.LOC104798855 Tarenaya hassleriana HOM05D004533 ORTHO05D005347 3.7e-20 103.2 322 39.8
THA.LOC104803161 Tarenaya hassleriana HOM05D004533 ORTHO05D005347 3.7e-20 103.2 322 39.8
THA.LOC104822894 Tarenaya hassleriana HOM05D004533 ORTHO05D005347 3.7e-20 103.2 322 39.8
Actinidia16147 Actinidia chinensis HOM05D004533 ORTHO05D005347 4.8e-20 102.8 232 53.0
Ah.02g126770 Amaranthus hybridus HOM05D004533 ORTHO05D005347 1.1e-19 101.7 318 33.3
CsaV3_5G033410 Cucumis sativus L. HOM05D004533 ORTHO05D005347 1.8e-19 100.9 304 34.5
Hma1.2p1_0428F.1_g151070 Hydrangea macrophylla HOM05D004533 ORTHO05D005347 3.1e-19 100.1 239 38.9
Oeu028724.1 Olea europaea HOM05D004533 ORTHO05D005347 4.1e-19 99.8 318 36.2
FvH4_4g29630 Fragaria vesca HOM05D004533 ORTHO05D005347 6.9e-19 99.0 327 40.7
FAN12G3098 Fragaria x ananassa HOM05D004533 ORTHO05D005347 6.9e-19 99.0 327 40.7
Nitab4.5_0006154g0010 Nicotiana tabacum HOM05D004533 ORTHO05D005347 1.5e-18 97.8 314 39.2
THA.LOC104821996 Tarenaya hassleriana HOM05D004533 ORTHO05D005347 2.0e-18 97.4 331 39.6
FAN17G0049 Fragaria x ananassa HOM05D004533 ORTHO05D005347 3.4e-18 96.7 327 40.1
PSO017G3527 Papaver somniferum HOM05D004533 ORTHO05D005347 3.4e-18 96.7 332 33.7
FAN22G0793 Fragaria x ananassa HOM05D004533 ORTHO05D005347 4.5e-18 96.3 327 40.1
Sp5g24200 Schrenkiella parvula HOM05D004533 ORTHO05D005347 4.5e-18 96.3 320 36.9
ECA233G1177 Erigeron canadensis HOM05D004533 ORTHO05D005347 3.8e-17 93.2 330 38.2
Actinidia13399 Actinidia chinensis HOM05D004533 ORTHO05D005347 8.5e-17 92.0 238 46.6
PSO478G4496 Papaver somniferum HOM05D004533 ORTHO05D005347 1.1e-16 91.7 337 32.6
Actinidia19907 Actinidia chinensis HOM05D004533 ORTHO05D005347 1.4e-16 91.3 300 43.7
DCAR_023748 Daucus carota HOM05D004533 ORTHO05D005347 1.9e-16 90.9 336 35.1
Solyc05g012030.1 Solanum lycopersicum HOM05D004533 ORTHO05D005347 1.9e-16 90.9 314 39.8
ClCG05G023610 Citrullus lanatus HOM05D004533 ORTHO05D005347 2.5e-16 90.5 307 40.1
VMungo1215G1442 Vigna mungo HOM05D004533 ORTHO05D005347 7.2e-16 89.0 254 44.9
BraA02t06624Z Brassica rapa HOM05D004533 ORTHO05D005347 9.4e-16 88.6 334 34.7
Carub.0002s1576 Capsella rubella HOM05D004533 ORTHO05D005347 9.4e-16 88.6 329 34.3
Hma1.2p1_0473F.1_g160260 Hydrangea macrophylla HOM05D004533 ORTHO05D005347 9.4e-16 88.6 315 33.3
MBI16_g39936_MAGBIO Magnolia biondii HOM05D004533 ORTHO05D005347 2.1e-15 87.4 315 37.1
RcHm_v2.0_Chr4g0437861 Rosa chinensis HOM05D004533 ORTHO05D005347 2.1e-15 87.4 328 40.2
A07p35490 Brassica napus HOM05D004533 ORTHO05D005347 6.1e-15 85.9 346 35.5
Glyma.02G121400 Glycine max HOM05D004533 ORTHO05D005347 7.9e-15 85.5 373 37.0
Lj6P776T6 Lonicera japonica HOM05D004533 ORTHO05D005347 7.9e-15 85.5 173 45.1
Nitab4.5_0000027g0050 Nicotiana tabacum HOM05D004533 ORTHO05D005347 1.0e-14 85.1 300 40.7
SGA_v2.0_scaffold287G47174 Striga asiatica HOM05D004533 ORTHO05D005347 1.4e-14 84.7 329 34.7
C06p40740 Brassica napus HOM05D004533 ORTHO05D005347 1.8e-14 84.3 338 34.9
BcaC08g46370 Brassica carinata HOM05D004533 ORTHO05D005347 3.0e-14 83.6 342 35.1
BolC2t08676H Brassica oleracea HOM05D004533 ORTHO05D005347 3.0e-14 83.6 334 36.5
BolC6t39358H Brassica oleracea HOM05D004533 ORTHO05D005347 3.0e-14 83.6 342 35.1
BcaB03g15876 Brassica carinata HOM05D004533 ORTHO05D005347 6.7e-14 82.4 345 36.2
BraA07t31139Z Brassica rapa HOM05D004533 ORTHO05D005347 6.7e-14 82.4 344 34.6
DCAR_026684 Daucus carota HOM05D004533 ORTHO05D005347 6.7e-14 82.4 340 32.4
DCAR_030051 Daucus carota HOM05D004533 ORTHO05D005347 6.7e-14 82.4 335 31.6
BcaC03g15057 Brassica carinata HOM05D004533 ORTHO05D005347 1.5e-13 81.3 332 36.1
arahy.Tifrunner.gnm1.ann1.PV72KB Arachis hypogaea HOM05D004533 ORTHO05D005347 2.0e-13 80.9 363 39.1
C02p26000 Brassica napus HOM05D004533 ORTHO05D005347 2.0e-13 80.9 334 35.9
MELO3C012160.2 Cucumis melo HOM05D004533 ORTHO05D005347 9.7e-13 78.6 304 32.9
Sopen05g006810 Solanum pennellii HOM05D004533 ORTHO05D005347 9.7e-13 78.6 227 46.7
A02p15640 Brassica napus HOM05D004533 ORTHO05D005347 1.3e-12 78.2 335 34.0
Aa31LG4G11830 Aethionema arabicum HOM05D004533 ORTHO05D005347 1.7e-12 77.8 285 41.8
Thhalv10018878m.g Eutrema salsugineum HOM05D004533 ORTHO05D005347 2.2e-12 77.4 338 34.6
ECA234G4159 Erigeron canadensis HOM05D004533 ORTHO05D005347 2.8e-12 77.0 333 34.2
AT1G69160 Arabidopsis thaliana HOM05D004533 ORTHO05D005347 3.7e-12 76.6 335 34.9
CARHR062030 Cardamine hirsuta HOM05D004533 ORTHO05D005347 3.7e-12 76.6 333 34.8
Lsat_1_v5_gn_4_11700 Lactuca sativa HOM05D004533 ORTHO05D005347 4.8e-12 76.3 331 40.8
Sed0009680 Sechium edule HOM05D004533 ORTHO05D005347 4.8e-12 76.3 246 35.4
arahy.Tifrunner.gnm1.ann1.NK9Z7F Arachis hypogaea HOM05D004533 ORTHO05D005347 6.3e-12 75.9 361 38.0
HanXRQChr12g0363201 Helianthus annuus HOM05D004533 ORTHO05D005347 1.1e-11 75.1 321 37.4
PGSC0003DMG400028307 Solanum tuberosum HOM05D004533 ORTHO05D005347 3.1e-11 73.6 310 32.6
AL2G28250 Arabidopsis lyrata HOM05D004533 ORTHO05D005347 9.1e-11 72.0 334 34.4
Lsat_1_v5_gn_8_45920 Lactuca sativa HOM05D004533 ORTHO05D005347 1.5e-10 71.2 316 36.4
ATR0827G049 Amborella trichopoda HOM05D004533 ORTHO05D005347 3.4e-10 70.1 326 32.2
Migut.E00039 Erythranthe guttata HOM05D004533 ORTHO05D005347 1.4e-08 64.7 300 38.7
MSTRG.7732 Avicennia marina HOM05D004533 ORTHO05D005347 4.2e-08 63.2 305 38.0
PSO782G4709 Papaver somniferum HOM05D004533 ORTHO05D005347 1.6e-07 61.2 328 32.6
DCAR_007202 Daucus carota HOM05D004533 ORTHO05D005347 1.4e-06 58.2 314 27.4
Nn3g17512 Nelumbo nucifera HOM05D004533 ORTHO05D005347 3.0e-06 57.0 310 36.8


User provided reference genes

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