Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc11g0002530 Simmondsia chinensis HOM05D004399 ORTHO05D005303 1.7e-131 472.6 226 100.0
Ah.03g138840 Amaranthus hybridus HOM05D004399 ORTHO05D005303 3.6e-118 428.3 223 88.8
Hund05832 Selenicereus undatus HOM05D004399 ORTHO05D005303 1.4e-117 426.4 223 88.8
Ah.02g126810 Amaranthus hybridus HOM05D004399 ORTHO05D005303 2.0e-116 422.5 225 87.1
EL10Ac6g15013 Beta vulgaris HOM05D004399 ORTHO05D005303 2.0e-116 422.5 221 89.6
Dinv34060 Davidia involucrata HOM05D004399 ORTHO05D005303 3.7e-115 418.3 223 87.4
CiPaw.05G124200 Carya illinoinensis HOM05D004399 ORTHO05D005303 6.3e-115 417.5 221 86.4
Ciclev10032681m.g Citrus clementina HOM05D004399 ORTHO05D005303 1.2e-113 413.3 221 85.5
TWI75G0511 Tripterygium wilfordii HOM05D004399 ORTHO05D005303 2.0e-113 412.5 221 85.5
MD13G1060600 Malus domestica HOM05D004399 ORTHO05D005303 2.7e-113 412.1 223 84.3
Eucgr.B03145 Eucalyptus grandis HOM05D004399 ORTHO05D005303 3.5e-113 411.8 221 86.0
Cpa.g.sc1.139 Carica papaya HOM05D004399 ORTHO05D005303 5.9e-113 411.0 221 85.5
Duzib251G0565 Durio zibethinus HOM05D004399 ORTHO05D005303 5.9e-113 411.0 221 86.0
AUR62003087 Chenopodium quinoa HOM05D004399 ORTHO05D005303 7.8e-113 410.6 221 86.0
Gohir.A03G104700 Gossypium hirsutum HOM05D004399 ORTHO05D005303 7.8e-113 410.6 221 86.0
Manes.05G109300 Manihot esculenta HOM05D004399 ORTHO05D005303 7.8e-113 410.6 221 86.0
QL03p073920 Quercus lobata HOM05D004399 ORTHO05D005303 7.8e-113 410.6 223 85.2
Haze_11894 Corylus avellana HOM05D004399 ORTHO05D005303 1.0e-112 410.2 223 85.7
Cfa008867 Carpinus fangiana HOM05D004399 ORTHO05D005303 1.3e-112 409.8 223 85.2
MELO3C011412.2 Cucumis melo HOM05D004399 ORTHO05D005303 2.9e-112 408.7 221 84.6
RcHm_v2.0_Chr4g0438081 Rosa chinensis HOM05D004399 ORTHO05D005303 2.9e-112 408.7 221 83.7
TAR622G1336 Trochodendron aralioides HOM05D004399 ORTHO05D005303 5.0e-112 407.9 221 85.1
CSS0044473 Camellia sinensis var. sinensis HOM05D004399 ORTHO05D005303 6.6e-112 407.5 221 85.1
CsaV3_6G033760 Cucumis sativus L. HOM05D004399 ORTHO05D005303 6.6e-112 407.5 221 84.2
ECA233G2368 Erigeron canadensis HOM05D004399 ORTHO05D005303 6.6e-112 407.5 222 83.8
Hma1.2p1_0566F.1_g179870 Hydrangea macrophylla HOM05D004399 ORTHO05D005303 6.6e-112 407.5 225 84.4
Lj3C1029T7 Lonicera japonica HOM05D004399 ORTHO05D005303 6.6e-112 407.5 223 84.3
Prupe.1G288800 Prunus persica HOM05D004399 ORTHO05D005303 6.6e-112 407.5 221 84.2
HanXRQChr12g0363151 Helianthus annuus HOM05D004399 ORTHO05D005303 8.6e-112 407.1 222 84.2
PGR083G0959 Punica granatum HOM05D004399 ORTHO05D005303 1.1e-111 406.8 222 84.7
AUR62007904 Chenopodium quinoa HOM05D004399 ORTHO05D005303 1.9e-111 406.0 221 84.6
CANSAT64G2641 Cannabis sativa HOM05D004399 ORTHO05D005303 2.5e-111 405.6 221 84.6
SGA_v2.0_scaffold16G07803 Striga asiatica HOM05D004399 ORTHO05D005303 2.5e-111 405.6 222 83.8
HanXRQChr08g0211681 Helianthus annuus HOM05D004399 ORTHO05D005303 3.3e-111 405.2 222 84.2
MBI14_g37191_MAGBIO Magnolia biondii HOM05D004399 ORTHO05D005303 3.3e-111 405.2 225 82.7
Nn3g17119 Nelumbo nucifera HOM05D004399 ORTHO05D005303 3.3e-111 405.2 223 83.0
Thecc.02G328800 Theobroma cacao HOM05D004399 ORTHO05D005303 5.6e-111 404.4 221 85.5
vmacro10433 Vaccinium macrocarpon HOM05D004399 ORTHO05D005303 7.3e-111 404.1 226 82.3
COL.COLO4_27864 Corchorus olitorius HOM05D004399 ORTHO05D005303 9.5e-111 403.7 221 84.2
PSO017G5651 Papaver somniferum HOM05D004399 ORTHO05D005303 9.5e-111 403.7 223 83.0
CANSAT11G0637 Cannabis sativa HOM05D004399 ORTHO05D005303 1.6e-110 402.9 221 83.7
FAN22G0874 Fragaria x ananassa HOM05D004399 ORTHO05D005303 1.6e-110 402.9 221 84.2
Migut.L01179 Erythranthe guttata HOM05D004399 ORTHO05D005303 2.1e-110 402.5 223 84.3
Lj6A777T47 Lonicera japonica HOM05D004399 ORTHO05D005303 2.1e-110 402.5 222 83.3
MD16G1059800 Malus domestica HOM05D004399 ORTHO05D005303 2.1e-110 402.5 223 83.0
Aqoxy3G03260 Aquilegia oxysepala HOM05D004399 ORTHO05D005303 2.8e-110 402.1 222 83.8
ClCG08G010510 Citrullus lanatus HOM05D004399 ORTHO05D005303 2.8e-110 402.1 221 83.7
FvH4_4g29830 Fragaria vesca HOM05D004399 ORTHO05D005303 2.8e-110 402.1 221 83.7
Cc06_g15640 Coffea canephora HOM05D004399 ORTHO05D005303 4.7e-110 401.4 223 82.5
FAN17G2847 Fragaria x ananassa HOM05D004399 ORTHO05D005303 8.0e-110 400.6 221 83.3
Nn4g24779 Nelumbo nucifera HOM05D004399 ORTHO05D005303 8.0e-110 400.6 223 82.5
Potri.010G157500 Populus trichocarpa HOM05D004399 ORTHO05D005303 1.0e-109 400.2 221 84.2
PGSC0003DMG402028313 Solanum tuberosum HOM05D004399 ORTHO05D005303 1.0e-109 400.2 223 82.5
Rhsim09G0126300 Rhododendron simsii HOM05D004399 ORTHO05D005303 1.8e-109 399.4 239 79.5
FAN12G0059 Fragaria x ananassa HOM05D004399 ORTHO05D005303 3.1e-109 398.7 221 83.3
Solyc05g012150.4 Solanum lycopersicum HOM05D004399 ORTHO05D005303 3.1e-109 398.7 223 82.5
PSO832G2862 Papaver somniferum HOM05D004399 ORTHO05D005303 4.0e-109 398.3 223 82.5
Potri.008G097100 Populus trichocarpa HOM05D004399 ORTHO05D005303 5.2e-109 397.9 221 83.3
arahy.Tifrunner.gnm1.ann1.MJW4NY Arachis hypogaea HOM05D004399 ORTHO05D005303 6.8e-109 397.5 221 83.3
Sopen05g006940 Solanum pennellii HOM05D004399 ORTHO05D005303 1.2e-108 396.7 223 82.1
Lj1g0019699 Lotus japonicus HOM05D004399 ORTHO05D005303 1.5e-108 396.4 221 84.2
Phvul.010G102900 Phaseolus vulgaris HOM05D004399 ORTHO05D005303 2.0e-108 396.0 221 82.8
Peaxi162Scf00175g00428 Petunia axillaris HOM05D004399 ORTHO05D005303 2.6e-108 395.6 223 82.1
Sed0000590 Sechium edule HOM05D004399 ORTHO05D005303 2.6e-108 395.6 222 82.9
CAN.G707.11 Capsicum annuum HOM05D004399 ORTHO05D005303 3.4e-108 395.2 223 81.2
Os04g0674200 Oryza sativa ssp. japonica HOM05D004399 ORTHO05D005303 3.4e-108 395.2 223 81.2
Psat3g063920 Pisum sativum HOM05D004399 ORTHO05D005303 3.4e-108 395.2 221 82.4
DCAR_024127 Daucus carota HOM05D004399 ORTHO05D005303 4.4e-108 394.8 219 83.6
VMungo0331G0538 Vigna mungo HOM05D004399 ORTHO05D005303 5.8e-108 394.4 221 82.4
BcaC06g31162 Brassica carinata HOM05D004399 ORTHO05D005303 9.8e-108 393.7 220 83.2
C07p34040 Brassica napus HOM05D004399 ORTHO05D005303 9.8e-108 393.7 220 83.2
BolC7t43918H Brassica oleracea HOM05D004399 ORTHO05D005303 9.8e-108 393.7 220 83.2
PSO478G0010 Papaver somniferum HOM05D004399 ORTHO05D005303 9.8e-108 393.7 223 82.1
Sabra08G0073300 Salix brachista HOM05D004399 ORTHO05D005303 9.8e-108 393.7 218 83.9
Ca_08608_v3 Cicer arietinum L. HOM05D004399 ORTHO05D005303 1.3e-107 393.3 223 81.6
arahy.Tifrunner.gnm1.ann1.E76E6E Arachis hypogaea HOM05D004399 ORTHO05D005303 1.7e-107 392.9 221 82.8
A06p42990 Brassica napus HOM05D004399 ORTHO05D005303 1.7e-107 392.9 224 82.1
BcaC06g31172 Brassica carinata HOM05D004399 ORTHO05D005303 2.2e-107 392.5 224 82.6
DCAR_026680 Daucus carota HOM05D004399 ORTHO05D005303 2.9e-107 392.1 221 83.7
Lsat_1_v5_gn_8_46460 Lactuca sativa HOM05D004399 ORTHO05D005303 3.7e-107 391.7 222 82.0
Os05g0188800 Oryza sativa ssp. japonica HOM05D004399 ORTHO05D005303 3.7e-107 391.7 223 80.3
Nitab4.5_0007061g0010 Nicotiana tabacum HOM05D004399 ORTHO05D005303 4.9e-107 391.3 223 81.6
THA.LOC104805201 Tarenaya hassleriana HOM05D004399 ORTHO05D005303 4.9e-107 391.3 220 83.2
Ca_25695_v3 Cicer arietinum L. HOM05D004399 ORTHO05D005303 6.4e-107 391.0 221 81.4
Sp2g14510 Schrenkiella parvula HOM05D004399 ORTHO05D005303 6.4e-107 391.0 220 82.3
MSTRG.7738 Avicennia marina HOM05D004399 ORTHO05D005303 8.3e-107 390.6 223 81.2
Aqoxy4G03091 Aquilegia oxysepala HOM05D004399 ORTHO05D005303 1.1e-106 390.2 216 83.8
Carub.0005s0281 Capsella rubella HOM05D004399 ORTHO05D005303 1.9e-106 389.4 225 80.4
AL5G13480 Arabidopsis lyrata HOM05D004399 ORTHO05D005303 2.4e-106 389.0 225 80.4
Oeu031535.3 Olea europaea HOM05D004399 ORTHO05D005303 2.4e-106 389.0 250 73.6
Lalb_Chr17g0341271 Lupinus albus HOM05D004399 ORTHO05D005303 3.2e-106 388.7 213 83.6
Gorai.005G145900 Gossypium raimondii HOM05D004399 ORTHO05D005303 4.1e-106 388.3 207 86.0
SalBow4G1206 Salvia bowleyana HOM05D004399 ORTHO05D005303 4.1e-106 388.3 223 80.3
Aa31LG2G6990 Aethionema arabicum HOM05D004399 ORTHO05D005303 5.4e-106 387.9 224 79.9
Glyma.16G032800 Glycine max HOM05D004399 ORTHO05D005303 5.4e-106 387.9 221 82.4
Atru.chr11.1611 Acer truncatum HOM05D004399 ORTHO05D005303 7.0e-106 387.5 223 80.7
Zm00001eb433530 Zea mays HOM05D004399 ORTHO05D005303 9.2e-106 387.1 221 80.1
Thhalv10004874m.g Eutrema salsugineum HOM05D004399 ORTHO05D005303 1.6e-105 386.3 224 79.9
Medtr4g094990 Medicago truncatula HOM05D004399 ORTHO05D005303 1.6e-105 386.3 221 80.1
Gohir.D02G129900 Gossypium hirsutum HOM05D004399 ORTHO05D005303 2.0e-105 386.0 207 85.5
Sed0002833 Sechium edule HOM05D004399 ORTHO05D005303 3.5e-105 385.2 218 82.1
AT2G03690 Arabidopsis thaliana HOM05D004399 ORTHO05D005303 4.6e-105 384.8 225 79.6
BcaC03g17230 Brassica carinata HOM05D004399 ORTHO05D005303 6.0e-105 384.4 224 80.4
BolC2t11249H Brassica oleracea HOM05D004399 ORTHO05D005303 6.0e-105 384.4 224 80.4
AL5G13460 Arabidopsis lyrata HOM05D004399 ORTHO05D005303 7.8e-105 384.0 225 79.6
BcaB07g30287 Brassica carinata HOM05D004399 ORTHO05D005303 7.8e-105 384.0 224 79.9
A02p33520 Brassica napus HOM05D004399 ORTHO05D005303 1.0e-104 383.6 224 79.9
Nitab4.5_0000231g0090 Nicotiana tabacum HOM05D004399 ORTHO05D005303 2.3e-104 382.5 243 74.5
Medtr7g095060 Medicago truncatula HOM05D004399 ORTHO05D005303 6.6e-104 380.9 221 78.7
Glyma.07G066700 Glycine max HOM05D004399 ORTHO05D005303 1.5e-103 379.8 221 80.1
CARHR146010 Cardamine hirsuta HOM05D004399 ORTHO05D005303 1.9e-103 379.4 225 79.1
CDE02G0376 Ceratophyllum demersum HOM05D004399 ORTHO05D005303 9.5e-103 377.1 216 80.1
Medtr4g094998 Medicago truncatula HOM05D004399 ORTHO05D005303 1.2e-102 376.7 221 77.8
SalBow2G2941 Salvia bowleyana HOM05D004399 ORTHO05D005303 8.1e-102 374.0 278 66.2
CDE04G3031 Ceratophyllum demersum HOM05D004399 ORTHO05D005303 1.5e-100 369.8 216 77.8
TPR.G29232 Trifolium pratense HOM05D004399 ORTHO05D005303 2.2e-99 365.9 221 78.3
SEGI_29941 Sequoiadendron giganteum HOM05D004399 ORTHO05D005303 5.4e-98 361.3 221 72.4
C02p51640 Brassica napus HOM05D004399 ORTHO05D005303 3.5e-97 358.6 208 81.2
AUR62019674 Chenopodium quinoa HOM05D004399 ORTHO05D005303 6.0e-97 357.8 228 75.4
Mapoly0124s0026 Marchantia polymorpha HOM05D004399 ORTHO05D005303 4.4e-92 341.7 219 71.2
AagrBONN_evm.TU.Sc2ySwM_368.1886 Anthoceros agrestis HOM05D004399 ORTHO05D005303 7.6e-92 340.9 219 70.3
Pp3c2_220 Physcomitrium patens HOM05D004399 ORTHO05D005303 1.6e-89 333.2 213 70.4
SMO196G0238 Selaginella moellendorffii HOM05D004399 ORTHO05D005303 1.5e-87 326.6 219 68.0
MD13G1061300 Malus domestica HOM05D004399 ORTHO05D005303 1.5e-79 300.1 164 87.8
Sed0017877 Sechium edule HOM05D004399 ORTHO05D005303 4.0e-77 292.0 169 76.9
GSVIVG01000552001 Vitis vinifera HOM05D004399 ORTHO05D005303 6.9e-77 291.2 163 84.7
ATR1120G108 Amborella trichopoda HOM05D004399 ORTHO05D005303 3.8e-75 285.4 162 77.2
SalBow4G2688 Salvia bowleyana HOM05D004399 ORTHO05D005303 5.1e-72 275.0 153 80.4
CBR_g38753 Chara braunii HOM05D004399 ORTHO05D001303 2.5e-71 272.7 215 58.6
TPR.G35678 Trifolium pratense HOM05D004399 ORTHO05D005303 2.1e-62 243.0 128 82.0
SalBow4G1336 Salvia bowleyana HOM05D004399 ORTHO05D005303 3.7e-62 242.3 162 70.4
PRCOL_00001738 Prasinoderma coloniale HOM05D004399 ORTHO05D005303 6.9e-61 238.0 212 53.8
Cre03.g154850 Chlamydomonas reinhardtii HOM05D004399 ORTHO05D005303 9.0e-61 237.7 216 53.2
HanXRQChr10g0298331 Helianthus annuus HOM05D004399 ORTHO05D005303 4.2e-58 228.8 129 79.1
MCO10G350 Micromonas commoda HOM05D004399 ORTHO05D005303 7.4e-55 218.0 209 49.3
vmacro20929 Vaccinium macrocarpon HOM05D004399 ORTHO05D005303 1.6e-54 216.9 148 76.4
unitig_8.g3180 Utricularia gibba HOM05D004399 ORTHO05D005303 1.2e-52 210.7 111 90.1
Glyma.02G119500 Glycine max HOM05D004399 ORTHO05D005303 6.7e-48 194.9 112 75.0
Phvul.007G165400 Phaseolus vulgaris HOM05D004399 ORTHO05D005303 6.7e-48 194.9 112 74.1
SMO187G0002 Selaginella moellendorffii HOM05D004399 ORTHO05D005303 2.2e-46 189.9 130 64.6
MBI14_g45258_MAGBIO Magnolia biondii HOM05D004399 ORTHO05D005303 9.7e-39 164.5 90 74.4
Carub.0005s2415 Capsella rubella HOM05D004399 ORTHO05D005303 2.4e-37 159.8 102 72.5
Cfa024149 Carpinus fangiana HOM05D004399 ORTHO05D005303 5.9e-36 155.2 219 39.7
HanXRQChr13g0414251 Helianthus annuus HOM05D004399 ORTHO05D005303 2.7e-33 146.4 97 78.4
FAN04G2106 Fragaria x ananassa HOM05D004399 ORTHO05D005303 4.5e-28 129.0 75 82.7
BcaB07g30659 Brassica carinata HOM05D004399 ORTHO05D005303 2.9e-27 126.3 134 48.5
SalBow4G1060 Salvia bowleyana HOM05D004399 ORTHO05D005303 3.8e-27 125.9 66 86.4
Phvul.007G165450 Phaseolus vulgaris HOM05D004399 ORTHO05D005303 1.9e-26 123.6 78 83.3
TPR.G30910 Trifolium pratense HOM05D004399 ORTHO05D005303 2.7e-25 119.8 61 90.2
Actinidia12918 Actinidia chinensis HOM05D004399 ORTHO05D005303 1.1e-23 114.4 83 60.2
SalBow4G1426 Salvia bowleyana HOM05D000195 ORTHO05D000377 5.3e-21 105.5 61 86.9
RcHm_v2.0_Chr7g0182561 Rosa chinensis HOM05D004399 ORTHO05D005303 1.6e-20 104.0 61 86.9
ATR1120G192 Amborella trichopoda HOM05D004399 ORTHO05D005303 2.0e-20 103.6 61 85.2
SalBow4G1755 Salvia bowleyana HOM05D004399 ORTHO05D005303 2.0e-20 103.6 59 66.1
HanXRQChr01g0013031 Helianthus annuus HOM05D004399 ORTHO05D005303 5.9e-20 102.1 54 85.2
TPR.G35682 Trifolium pratense HOM05D004399 ORTHO05D005303 5.5e-18 95.5 64 76.6
Nn4g23036 Nelumbo nucifera HOM05D004399 ORTHO05D005303 1.6e-17 94.0 64 71.9
HPP92_015023 Vanilla planifolia HOM05D000240 ORTHO05D001153 8.8e-16 88.2 100 49.0
FAN08G1770 Fragaria x ananassa HOM05D004399 ORTHO05D005303 1.5e-15 87.4 128 44.5
Glyma.07G066400 Glycine max HOM05D004399 ORTHO05D005303 2.0e-15 87.0 54 85.2
SEGI_28424 Sequoiadendron giganteum HOM05D004399 ORTHO05D005303 2.0e-12 77.0 51 74.5
A09p24540 Brassica napus HOM05D004399 ORTHO05D005303 1.8e-08 63.9 39 71.8
DCAR_028902 Daucus carota HOM05D004399 ORTHO05D175529 5.2e-08 62.4 43 76.7
SalBow4G0663 Salvia bowleyana HOM05D000195 ORTHO05D000377 2.2e-06 57.0 35 77.1


User provided reference genes

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