Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc11g0002500 Simmondsia chinensis HOM05D003787 ORTHO05D001736 6.0e-245 850.5 460 100.0
Sc04g0007550 Simmondsia chinensis HOM05D003787 ORTHO05D001736 3.3e-41 173.7 261 46.0
Sc14g0007980 Simmondsia chinensis HOM05D003787 ORTHO05D001736 1.3e-29 135.2 221 43.9
PGR119G1736 Punica granatum HOM05D003787 ORTHO05D001736 5.6e-25 119.8 410 31.2
Potri.008G096300 Populus trichocarpa HOM05D003787 ORTHO05D001736 2.6e-22 110.9 376 31.9
Potri.010G158000 Populus trichocarpa HOM05D003787 ORTHO05D001736 2.2e-21 107.8 316 32.0
Duzib268G1106 Durio zibethinus HOM05D003787 ORTHO05D001736 8.3e-21 105.9 323 31.0
Sabra10G0120000 Salix brachista HOM05D003787 ORTHO05D001736 1.1e-20 105.5 193 39.4
SHI15724 Sapria himalayana HOM05D003787 ORTHO05D001736 5.4e-20 103.2 299 33.4
CiPaw.05G124800 Carya illinoinensis HOM05D003787 ORTHO05D001736 7.0e-20 102.8 415 28.7
COL.COLO4_27878 Corchorus olitorius HOM05D003787 ORTHO05D001736 9.2e-20 102.4 216 37.0
GSVIVG01012223001 Vitis vinifera HOM05D003787 ORTHO05D001736 2.7e-19 100.9 130 46.9
Duzib251G0768 Durio zibethinus HOM05D003787 ORTHO05D001736 1.3e-18 98.6 279 31.2
Sabra08G0072600 Salix brachista HOM05D003787 ORTHO05D001736 1.1e-17 95.5 189 39.2
TAR622G0628 Trochodendron aralioides HOM05D003787 ORTHO05D001736 3.6e-16 90.5 262 32.1
MD13G1062500 Malus domestica HOM05D003787 ORTHO05D001736 6.2e-16 89.7 193 37.3
Prupe.1G287500 Prunus persica HOM05D003787 ORTHO05D001736 6.2e-16 89.7 329 33.1
Thecc.02G330000 Theobroma cacao HOM05D003787 ORTHO05D001736 6.2e-16 89.7 427 27.4
AUR62007913 Chenopodium quinoa HOM05D000094 ORTHO05D002350 1.1e-15 89.0 277 30.0
Atru.chr11.1622 Acer truncatum HOM05D003787 ORTHO05D001736 1.4e-15 88.6 259 34.0
Hma1.2p1_0566F.1_g179820 Hydrangea macrophylla HOM05D003787 ORTHO05D001736 1.8e-15 88.2 137 45.3
Dinv16736 Davidia involucrata HOM05D003787 ORTHO05D001736 2.3e-15 87.8 168 39.9
ClCG05G023700 Citrullus lanatus HOM05D003787 ORTHO05D001736 3.1e-15 87.4 273 30.8
AUR62003095 Chenopodium quinoa HOM05D000094 ORTHO05D002350 6.8e-15 86.3 259 30.5
MD16G1060800 Malus domestica HOM05D003787 ORTHO05D001736 6.8e-15 86.3 324 29.6
Rhsim09G0127000 Rhododendron simsii HOM05D003787 ORTHO05D001736 6.8e-15 86.3 207 36.2
MELO3C012154.2 Cucumis melo HOM05D003787 ORTHO05D001736 3.4e-14 84.0 317 30.0
CsaV3_5G033340 Cucumis sativus L. HOM05D003787 ORTHO05D001736 3.4e-14 84.0 275 30.5
Ciclev10033684m.g Citrus clementina HOM05D003787 ORTHO05D001736 5.8e-14 83.2 265 29.8
Haze_14428 Corylus avellana HOM05D003787 ORTHO05D001736 1.7e-13 81.6 204 34.8
TWI31G1463 Tripterygium wilfordii HOM05D003787 ORTHO05D001736 2.9e-13 80.9 188 35.6
QL03p074082 Quercus lobata HOM05D003787 ORTHO05D001736 8.3e-13 79.3 252 32.1
Sed0025283 Sechium edule HOM05D003787 ORTHO05D001736 8.3e-13 79.3 132 40.9
vmacro10428 Vaccinium macrocarpon HOM05D003787 ORTHO05D001736 1.1e-12 79.0 137 40.1
Cpa.g.sc1.128 Carica papaya HOM05D003787 ORTHO05D001736 1.9e-12 78.2 246 35.0
Cfa007670 Carpinus fangiana HOM05D003787 ORTHO05D001736 1.9e-12 78.2 157 36.3
TAR371G0370 Trochodendron aralioides HOM05D006637 ORTHO05D001736 1.9e-12 78.2 219 32.4
TAR374G1256 Trochodendron aralioides HOM05D003787 ORTHO05D001736 1.9e-12 78.2 262 30.5
Aqoxy3G00509 Aquilegia oxysepala HOM05D006637 ORTHO05D001736 4.1e-12 77.0 188 29.8
Actinidia13966 Actinidia chinensis HOM05D003787 ORTHO05D001736 5.4e-12 76.6 314 30.3
CANSAT64G2286 Cannabis sativa HOM05D003787 ORTHO05D001736 5.4e-12 76.6 275 30.5
Nitab4.5_0007460g0020 Nicotiana tabacum HOM05D011975 ORTHO05D001736 5.4e-12 76.6 143 39.9
Gorai.008G176900 Gossypium raimondii HOM05D039012 ORTHO05D001736 7.1e-12 76.3 211 30.3
Nitab4.5_0026364g0010 Nicotiana tabacum HOM05D011975 ORTHO05D001736 7.1e-12 76.3 353 29.2
Peaxi162Scf00667g00065 Petunia axillaris HOM05D011975 ORTHO05D001736 7.1e-12 76.3 160 36.9
MSTRG.755 Avicennia marina HOM05D011975 ORTHO05D001736 9.2e-12 75.9 340 31.5
Dinv34065 Davidia involucrata HOM05D003787 ORTHO05D001736 9.2e-12 75.9 312 28.5
Haze_11903 Corylus avellana HOM05D003787 ORTHO05D001736 2.1e-11 74.7 137 35.8
Nn3g17457 Nelumbo nucifera HOM05D003787 ORTHO05D001736 2.7e-11 74.3 258 32.2
Aqoxy3G03685 Aquilegia oxysepala HOM05D006637 ORTHO05D001736 3.5e-11 73.9 170 34.1
TWI79G0236 Tripterygium wilfordii HOM05D003787 ORTHO05D001736 7.8e-11 72.8 312 28.8
Ah.02g126850 Amaranthus hybridus HOM05D003787 ORTHO05D001736 1.0e-10 72.4 184 32.1
Nitab4.5_0003583g0020 Nicotiana tabacum HOM05D011975 ORTHO05D001736 1.0e-10 72.4 232 31.5
RcHm_v2.0_Chr4g0438271 Rosa chinensis HOM05D003787 ORTHO05D001736 1.0e-10 72.4 270 30.0
CDE04G2454 Ceratophyllum demersum HOM05D003787 ORTHO05D001736 1.3e-10 72.0 102 41.2
TWI75G0087 Tripterygium wilfordii HOM05D003787 ORTHO05D001736 2.3e-10 71.2 250 27.6
DCAR_024124 Daucus carota HOM05D003787 ORTHO05D001736 3.0e-10 70.9 235 31.5
Nitab4.5_0001118g0030 Nicotiana tabacum HOM05D011975 ORTHO05D001736 3.0e-10 70.9 181 38.7
PSO478G0913 Papaver somniferum HOM05D006637 ORTHO05D001736 3.0e-10 70.9 174 32.8
CAN.G1377.3 Capsicum annuum HOM05D011975 ORTHO05D001736 3.9e-10 70.5 111 39.6
PSO017G7320 Papaver somniferum HOM05D006637 ORTHO05D001736 3.9e-10 70.5 174 32.8
Migut.L01187 Erythranthe guttata HOM05D003787 ORTHO05D001736 5.1e-10 70.1 92 45.7
Gorai.013G094300 Gossypium raimondii HOM05D003787 ORTHO05D001736 5.1e-10 70.1 150 33.3
Nn4g23435 Nelumbo nucifera HOM05D006637 ORTHO05D001736 5.1e-10 70.1 236 31.8
Gohir.D13G082500 Gossypium hirsutum HOM05D003787 ORTHO05D001736 6.6e-10 69.7 150 33.3
Sc10g0009690 Simmondsia chinensis HOM05D006637 ORTHO05D001736 6.6e-10 69.7 138 36.2
TWI60G0888 Tripterygium wilfordii HOM05D003787 ORTHO05D001736 8.6e-10 69.3 197 29.4
Psat2g130920 Pisum sativum HOM05D014318 ORTHO05D001736 1.1e-09 68.9 269 29.0
Actinidia17586 Actinidia chinensis HOM05D003787 ORTHO05D001736 1.5e-09 68.6 117 41.9
Gorai.009G326900 Gossypium raimondii HOM05D003787 ORTHO05D001736 1.5e-09 68.6 255 29.4
Lju41C3T13 Lonicera japonica HOM05D003787 ORTHO05D001736 1.5e-09 68.6 152 34.9
RcHm_v2.0_Chr7g0183151 Rosa chinensis HOM05D006637 ORTHO05D001736 1.9e-09 68.2 222 30.2
Gohir.D05G306900 Gossypium hirsutum HOM05D003787 ORTHO05D001736 2.5e-09 67.8 255 29.4
Prupe.5G205600 Prunus persica HOM05D006637 ORTHO05D001736 2.5e-09 67.8 194 32.5
SGA_v2.0_scaffold36G14463 Striga asiatica HOM05D003787 ORTHO05D001736 2.5e-09 67.8 158 34.2
Os07g0298100 Oryza sativa ssp. japonica HOM05D003787 ORTHO05D001736 3.3e-09 67.4 175 31.4
Thhalv10005553m.g Eutrema salsugineum HOM05D003787 ORTHO05D001736 4.3e-09 67.0 99 44.4
Atru.chr9.567 Acer truncatum HOM05D006637 ORTHO05D001736 5.6e-09 66.6 152 40.1
Lalb_Chr10g0098891 Lupinus albus HOM05D014318 ORTHO05D001736 5.6e-09 66.6 242 31.0
Sp2g14470 Schrenkiella parvula HOM05D003787 ORTHO05D001736 5.6e-09 66.6 121 40.5
PGSC0003DMG400017799 Solanum tuberosum HOM05D011975 ORTHO05D001736 5.6e-09 66.6 163 36.2
Gohir.A13G082800 Gossypium hirsutum HOM05D003787 ORTHO05D001736 7.3e-09 66.2 165 32.1
PSO478G3423 Papaver somniferum HOM05D006637 ORTHO05D001736 7.3e-09 66.2 154 36.4
Peaxi162Scf00026g00163 Petunia axillaris HOM05D011975 ORTHO05D001736 7.3e-09 66.2 84 46.4
Dinv33830 Davidia involucrata HOM05D003787 ORTHO05D001736 9.5e-09 65.9 81 45.7
FAN12G3642 Fragaria x ananassa HOM05D005972 ORTHO05D007548 9.5e-09 65.9 120 38.3
Sc04g0004350 Simmondsia chinensis HOM05D006637 ORTHO05D001736 9.5e-09 65.9 124 37.9
Ciclev10023416m.g Citrus clementina HOM05D006637 ORTHO05D001736 1.2e-08 65.5 171 35.1
Gohir.A12G161000 Gossypium hirsutum HOM05D039012 ORTHO05D001736 1.6e-08 65.1 77 42.9
Potri.017G094300 Populus trichocarpa HOM05D003787 ORTHO05D001736 1.6e-08 65.1 116 35.3
PGSC0003DMG400021892 Solanum tuberosum HOM05D011975 ORTHO05D001736 1.6e-08 65.1 93 39.8
HPP92_011441 Vanilla planifolia HOM05D003787 ORTHO05D001736 1.6e-08 65.1 181 32.6
ATR0177G031 Amborella trichopoda HOM05D003787 ORTHO05D001736 2.1e-08 64.7 196 31.1
FAN07G1127 Fragaria x ananassa HOM05D005972 ORTHO05D007548 2.1e-08 64.7 120 38.3
FAN17G0759 Fragaria x ananassa HOM05D003787 ORTHO05D001736 2.1e-08 64.7 120 38.3
PSO017G1216 Papaver somniferum HOM05D006637 ORTHO05D001736 2.1e-08 64.7 305 28.2
CSS0023913 Camellia sinensis var. sinensis HOM05D003787 ORTHO05D001736 2.8e-08 64.3 142 38.7
Gohir.A05G306700 Gossypium hirsutum HOM05D003787 ORTHO05D001736 2.8e-08 64.3 276 27.2
Carub.0005s0277 Capsella rubella HOM05D003787 ORTHO05D001736 3.6e-08 63.9 99 45.5
DCAR_030042 Daucus carota HOM05D003787 ORTHO05D001736 3.6e-08 63.9 103 41.7
MBI19_g14007_MAGBIO Magnolia biondii HOM05D006637 ORTHO05D001736 3.6e-08 63.9 188 31.9
Actinidia04823 Actinidia chinensis HOM05D006637 ORTHO05D001736 4.7e-08 63.5 128 34.4
CDE05G3272 Ceratophyllum demersum HOM05D003787 ORTHO05D001736 4.7e-08 63.5 172 30.8
arahy.Tifrunner.gnm1.ann1.NP9FW8 Arachis hypogaea HOM05D003787 ORTHO05D001736 6.2e-08 63.2 113 32.7
CSS0001662 Camellia sinensis var. sinensis HOM05D003787 ORTHO05D001736 6.2e-08 63.2 129 36.4
THA.LOC104800368 Tarenaya hassleriana HOM05D011628 ORTHO05D014769 6.2e-08 63.2 187 34.2
Atru.chr8.428 Acer truncatum HOM05D003787 ORTHO05D001736 8.1e-08 62.8 126 37.3
BcaC04g21469 Brassica carinata HOM05D000070 ORTHO05D006344 8.1e-08 62.8 91 47.3
C09p31430 Brassica napus HOM05D000070 ORTHO05D006344 8.1e-08 62.8 91 47.3
BolC9t56002H Brassica oleracea HOM05D005523 ORTHO05D007089 8.1e-08 62.8 91 47.3
CiPaw.04G055500 Carya illinoinensis HOM05D003787 ORTHO05D001736 8.1e-08 62.8 168 32.7
Gohir.D12G164300 Gossypium hirsutum HOM05D039012 ORTHO05D001736 8.1e-08 62.8 326 26.4
Rhsim12G0148600 Rhododendron simsii HOM05D006637 ORTHO05D001736 8.1e-08 62.8 105 39.0
Solyc01g010280.3 Solanum lycopersicum HOM05D011975 ORTHO05D001736 8.1e-08 62.8 173 32.9
TAR629G2847 Trochodendron aralioides HOM05D003787 ORTHO05D001736 8.1e-08 62.8 138 32.6
Manes.02G055200 Manihot esculenta HOM05D003787 ORTHO05D001736 1.1e-07 62.4 151 30.5
THA.LOC104805198 Tarenaya hassleriana HOM05D003787 ORTHO05D001736 1.4e-07 62.0 72 48.6
vmacro16493 Vaccinium macrocarpon HOM05D006637 ORTHO05D001736 1.4e-07 62.0 104 36.5
Ca_04304_v3 Cicer arietinum L. HOM05D003787 ORTHO05D001736 1.8e-07 61.6 166 31.9
Lj2g0021607 Lotus japonicus HOM05D003787 ORTHO05D001736 1.8e-07 61.6 251 29.9
Rhsim10G0049700 Rhododendron simsii HOM05D003787 ORTHO05D001736 1.8e-07 61.6 168 33.9
Sabra17G0083100 Salix brachista HOM05D003787 ORTHO05D001736 1.8e-07 61.6 193 31.6
Sopen01g005900 Solanum pennellii HOM05D011975 ORTHO05D001736 1.8e-07 61.6 173 32.9
VMungo1215G1514 Vigna mungo HOM05D014318 ORTHO05D001736 1.8e-07 61.6 194 30.9
Cpa.g.sc10.158 Carica papaya HOM05D006637 ORTHO05D001736 2.4e-07 61.2 196 32.1
Lsat_1_v5_gn_2_90140 Lactuca sativa HOM05D003787 ORTHO05D001736 2.4e-07 61.2 179 30.2
Nitab4.5_0003841g0060 Nicotiana tabacum HOM05D003787 ORTHO05D001736 2.4e-07 61.2 166 31.9
THA.LOC104822009 Tarenaya hassleriana HOM05D011628 ORTHO05D014769 2.4e-07 61.2 208 32.2
A09p24510 Brassica napus HOM05D003787 ORTHO05D001736 3.1e-07 60.8 132 37.9
GSVIVG01007850001 Vitis vinifera HOM05D006637 ORTHO05D001736 3.1e-07 60.8 264 29.2
BraA09t38045Z Brassica rapa HOM05D003787 ORTHO05D001736 4.0e-07 60.5 132 37.9
Dinv22776 Davidia involucrata HOM05D006637 ORTHO05D001736 4.0e-07 60.5 203 29.6
FvH4_4g29990 Fragaria vesca HOM05D003787 ORTHO05D001736 4.0e-07 60.5 325 29.8
Aa31LG2G7040 Aethionema arabicum HOM05D003787 ORTHO05D001736 5.2e-07 60.1 78 47.4
CAN.G497.103 Capsicum annuum HOM05D003787 ORTHO05D001736 5.2e-07 60.1 147 32.0
DCAR_026677 Daucus carota HOM05D005523 ORTHO05D007089 5.2e-07 60.1 150 32.0
Glyma.19G030300 Glycine max HOM05D003787 ORTHO05D001736 5.2e-07 60.1 68 48.5
Lalb_Chr04g0255641 Lupinus albus HOM05D014318 ORTHO05D001736 5.2e-07 60.1 254 30.7
PGR083G0945 Punica granatum HOM05D006637 ORTHO05D001736 5.2e-07 60.1 199 32.7
BcaB07g30663 Brassica carinata HOM05D003787 ORTHO05D001736 6.8e-07 59.7 132 37.1
Cc00_g04710 Coffea canephora HOM05D006637 ORTHO05D001736 6.8e-07 59.7 141 37.6
Lalb_Chr21g0318351 Lupinus albus HOM05D003787 ORTHO05D001736 6.8e-07 59.7 102 38.2
THA.LOC104801821 Tarenaya hassleriana HOM05D003787 ORTHO05D001736 6.8e-07 59.7 107 41.1
CAN.G1228.21 Capsicum annuum HOM05D006637 ORTHO05D001736 8.9e-07 59.3 120 35.0
Migut.H00622 Erythranthe guttata HOM05D003787 ORTHO05D001736 8.9e-07 59.3 86 44.2
Glyma.01G060001 Glycine max HOM05D014318 ORTHO05D001736 8.9e-07 59.3 392 26.5
Gorai.012G048600 Gossypium raimondii HOM05D003787 ORTHO05D001736 8.9e-07 59.3 160 32.5
Phvul.004G037400 Phaseolus vulgaris HOM05D003787 ORTHO05D001736 8.9e-07 59.3 186 31.2
Sabra12G0044700 Salix brachista HOM05D006637 ORTHO05D001736 8.9e-07 59.3 97 38.1
Sc12g0007280 Simmondsia chinensis HOM05D006637 ORTHO05D001736 8.9e-07 59.3 166 30.7
TPR.G24475 Trifolium pratense HOM05D003787 ORTHO05D000653 8.9e-07 59.3 117 32.5
CDE02G2765 Ceratophyllum demersum HOM05D003787 ORTHO05D001736 1.2e-06 58.9 159 32.1
ECA238G2630 Erigeron canadensis HOM05D003787 ORTHO05D001736 1.2e-06 58.9 93 39.8
Lalb_Chr06g0174951 Lupinus albus HOM05D003787 ORTHO05D001736 1.2e-06 58.9 169 32.5
HPP92_003197 Vanilla planifolia HOM05D003787 ORTHO05D001736 1.2e-06 58.9 56 48.2
AUR62008536 Chenopodium quinoa HOM05D006637 ORTHO05D001736 1.5e-06 58.5 174 33.3
Duzib187G0666 Durio zibethinus HOM05D003787 ORTHO05D001736 1.5e-06 58.5 219 27.9
Gohir.D04G043300 Gossypium hirsutum HOM05D003787 ORTHO05D001736 1.5e-06 58.5 160 32.5
MD14G1212300 Malus domestica HOM05D006637 ORTHO05D001736 1.5e-06 58.5 122 35.2
Glyma.13G056300 Glycine max HOM05D003787 ORTHO05D001736 2.0e-06 58.2 112 37.5
MD17G1059900 Malus domestica HOM05D003787 ORTHO05D001736 2.0e-06 58.2 101 40.6
PGSC0003DMG400001359 Solanum tuberosum HOM05D003787 ORTHO05D001736 2.0e-06 58.2 106 37.7
DCAR_011559 Daucus carota HOM05D006637 ORTHO05D001736 2.6e-06 57.8 174 32.8
Solyc03g115060.3 Solanum lycopersicum HOM05D006637 ORTHO05D001736 2.6e-06 57.8 186 30.1
ClCG06G015610 Citrullus lanatus HOM05D006637 ORTHO05D001736 3.4e-06 57.4 161 31.1
Oeu004587.1 Olea europaea HOM05D011975 ORTHO05D001736 3.4e-06 57.4 146 36.3
Cfa019342 Carpinus fangiana HOM05D000824 ORTHO05D003555 4.4e-06 57.0 125 34.4
MD06G1225400 Malus domestica HOM05D006637 ORTHO05D001736 4.4e-06 57.0 270 27.4
Thecc.04G095900 Theobroma cacao HOM05D003787 ORTHO05D001736 4.4e-06 57.0 283 26.9
VMungo0464G0106 Vigna mungo HOM05D003787 ORTHO05D001736 4.4e-06 57.0 187 29.4
FAN22G0001 Fragaria x ananassa HOM05D003787 ORTHO05D001736 5.8e-06 56.6 129 34.1
Oeu007068.1 Olea europaea HOM05D003787 ORTHO05D001736 5.8e-06 56.6 254 28.7
Potri.012G061700 Populus trichocarpa HOM05D006637 ORTHO05D001736 5.8e-06 56.6 177 31.1
Sabra04G0069600 Salix brachista HOM05D003787 ORTHO05D001736 5.8e-06 56.6 178 32.0
Sed0008450 Sechium edule HOM05D006637 ORTHO05D001736 5.8e-06 56.6 265 29.1
Nitab4.5_0007320g0010 Nicotiana tabacum HOM05D003787 ORTHO05D001736 7.6e-06 56.2 166 33.1
SGA_v2.0_scaffold52G19142 Striga asiatica HOM05D003787 ORTHO05D001736 7.6e-06 56.2 62 48.4
TWI81G0402 Tripterygium wilfordii HOM05D006637 ORTHO05D001736 7.6e-06 56.2 281 26.0
AT2G03630 Arabidopsis thaliana HOM05D003787 ORTHO05D001736 9.9e-06 55.8 60 48.3
CiPaw.03G088400 Carya illinoinensis HOM05D003787 ORTHO05D001736 9.9e-06 55.8 53 52.8
Migut.I00333 Erythranthe guttata HOM05D006637 ORTHO05D001736 9.9e-06 55.8 65 47.7
Medtr6g015240 Medicago truncatula HOM05D003787 ORTHO05D001736 9.9e-06 55.8 114 35.1
Sopen03g034130 Solanum pennellii HOM05D006637 ORTHO05D001736 9.9e-06 55.8 167 31.1


User provided reference genes

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