Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc11g0002420 Simmondsia chinensis HOM05D001391 ORTHO05D005432 1.9e-159 565.8 294 100.0
Ah.02g126880 Amaranthus hybridus HOM05D001391 ORTHO05D005432 4.1e-114 415.2 292 72.9
MD16G1061600 Malus domestica HOM05D001391 ORTHO05D005432 4.1e-114 415.2 289 70.6
Haze_11913 Corylus avellana HOM05D001391 ORTHO05D005432 2.0e-113 412.9 251 79.3
arahy.Tifrunner.gnm1.ann1.52K398 Arachis hypogaea HOM05D001391 ORTHO05D005432 1.3e-112 410.2 298 70.1
Manes.01G028100 Manihot esculenta HOM05D001391 ORTHO05D005432 2.9e-112 409.1 295 69.2
Cc11_g12040 Coffea canephora HOM05D001391 ORTHO05D005432 5.0e-112 408.3 302 70.9
Sabra10G0120500 Salix brachista HOM05D001391 ORTHO05D005432 6.5e-112 407.9 298 70.5
TAR629G1471 Trochodendron aralioides HOM05D001391 ORTHO05D005432 6.5e-112 407.9 295 69.8
TAR629G2660 Trochodendron aralioides HOM05D001391 ORTHO05D005432 6.5e-112 407.9 295 69.8
VMungo0251G0716 Vigna mungo HOM05D001391 ORTHO05D005432 6.5e-112 407.9 290 70.7
arahy.Tifrunner.gnm1.ann1.G55KBL Arachis hypogaea HOM05D001391 ORTHO05D005432 8.5e-112 407.5 271 74.2
CiPaw.06G092300 Carya illinoinensis HOM05D001391 ORTHO05D005432 1.1e-111 407.1 305 67.2
EL10Ac6g14993 Beta vulgaris HOM05D001391 ORTHO05D005432 1.5e-111 406.8 257 76.7
QL03p071791 Quercus lobata HOM05D001391 ORTHO05D005432 1.5e-111 406.8 291 70.8
Ca_18800_v3 Cicer arietinum L. HOM05D001391 ORTHO05D005432 1.9e-111 406.4 293 69.3
QL03p072323 Quercus lobata HOM05D001391 ORTHO05D005432 1.9e-111 406.4 291 70.4
PSO017G5650 Papaver somniferum HOM05D001391 ORTHO05D005432 2.5e-111 406.0 294 70.4
Lj4g0006249 Lotus japonicus HOM05D001391 ORTHO05D005432 3.2e-111 405.6 291 68.7
PGSC0003DMG400028375 Solanum tuberosum HOM05D001391 ORTHO05D005432 3.2e-111 405.6 298 68.8
QL03p071836 Quercus lobata HOM05D001391 ORTHO05D005432 4.2e-111 405.2 292 70.9
Hund05837 Selenicereus undatus HOM05D001391 ORTHO05D005432 4.2e-111 405.2 258 81.4
THA.LOC104824058 Tarenaya hassleriana HOM05D001391 ORTHO05D005432 4.2e-111 405.2 287 70.4
QL03p072348 Quercus lobata HOM05D001391 ORTHO05D005432 5.5e-111 404.8 297 69.4
Sed0027135 Sechium edule HOM05D001391 ORTHO05D005432 7.2e-111 404.4 296 68.2
SGA_v2.0_scaffold16G07780 Striga asiatica HOM05D001391 ORTHO05D005432 7.2e-111 404.4 295 70.2
TWI31G1273 Tripterygium wilfordii HOM05D001391 ORTHO05D005432 7.2e-111 404.4 295 70.2
MD13G1063100 Malus domestica HOM05D001391 ORTHO05D005432 1.2e-110 403.7 292 69.9
Sed0003297 Sechium edule HOM05D001391 ORTHO05D005432 1.2e-110 403.7 296 67.6
Sopen05g007170 Solanum pennellii HOM05D001391 ORTHO05D005432 1.6e-110 403.3 301 68.1
Eucgr.B03154 Eucalyptus grandis HOM05D001391 ORTHO05D005432 2.1e-110 402.9 268 74.3
Glyma.20G025600 Glycine max HOM05D001391 ORTHO05D005432 2.1e-110 402.9 295 69.8
PSO478G1327 Papaver somniferum HOM05D001391 ORTHO05D005432 2.1e-110 402.9 294 70.1
Psat7g134560 Pisum sativum HOM05D001391 ORTHO05D005432 2.7e-110 402.5 294 70.7
QL06p022506 Quercus lobata HOM05D001391 ORTHO05D005432 2.7e-110 402.5 264 75.4
Zm00001eb393170 Zea mays HOM05D001391 ORTHO05D005432 2.7e-110 402.5 294 69.0
QL03p072246 Quercus lobata HOM05D001391 ORTHO05D005432 3.6e-110 402.1 251 77.3
CANSAT64G0915 Cannabis sativa HOM05D001391 ORTHO05D005432 4.7e-110 401.7 275 71.6
FAN22G1389 Fragaria x ananassa HOM05D001391 ORTHO05D005432 4.7e-110 401.7 259 74.9
Ciclev10031905m.g Citrus clementina HOM05D001391 ORTHO05D005432 6.1e-110 401.4 257 76.3
RcHm_v2.0_Chr4g0438441 Rosa chinensis HOM05D001391 ORTHO05D005432 8.0e-110 401.0 299 68.6
Phvul.002G102100 Phaseolus vulgaris HOM05D001391 ORTHO05D005432 1.0e-109 400.6 290 70.0
AUR62003104 Chenopodium quinoa HOM05D001391 ORTHO05D005432 1.4e-109 400.2 262 74.8
CDE05G0079 Ceratophyllum demersum HOM05D001391 ORTHO05D005432 1.8e-109 399.8 278 70.9
FvH4_4g30104 Fragaria vesca HOM05D001391 ORTHO05D005432 1.8e-109 399.8 302 68.2
Oeu048144.1 Olea europaea HOM05D001391 ORTHO05D005432 1.8e-109 399.8 257 75.9
Potri.010G158700 Populus trichocarpa HOM05D001391 ORTHO05D005432 2.3e-109 399.4 295 68.8
DCAR_030039 Daucus carota HOM05D001391 ORTHO05D005432 3.0e-109 399.1 297 67.3
Prupe.1G286500 Prunus persica HOM05D001391 ORTHO05D005432 3.0e-109 399.1 294 68.7
PGR102G1705 Punica granatum HOM05D001391 ORTHO05D005432 3.0e-109 399.1 265 73.6
CAN.G616.39 Capsicum annuum HOM05D001391 ORTHO05D005432 4.0e-109 398.7 300 68.7
FAN07G1596 Fragaria x ananassa HOM05D001391 ORTHO05D005432 4.0e-109 398.7 302 68.2
MELO3C011425.2 Cucumis melo HOM05D001391 ORTHO05D005432 5.2e-109 398.3 296 67.2
QL03p071994 Quercus lobata HOM05D001391 ORTHO05D005432 5.2e-109 398.3 292 68.8
Lalb_Chr05g0219941 Lupinus albus HOM05D001391 ORTHO05D005432 6.8e-109 397.9 292 69.2
COL.COLO4_27891 Corchorus olitorius HOM05D001391 ORTHO05D005432 8.8e-109 397.5 306 67.0
Lj3C1030G23 Lonicera japonica HOM05D001391 ORTHO05D005432 8.8e-109 397.5 267 73.8
DCAR_007192 Daucus carota HOM05D001391 ORTHO05D005432 1.5e-108 396.7 298 69.5
GSVIVG01012214001 Vitis vinifera HOM05D001391 ORTHO05D005432 1.5e-108 396.7 297 68.0
Thecc.02G331500 Theobroma cacao HOM05D001391 ORTHO05D005432 2.0e-108 396.4 251 76.5
Medtr4g083100 Medicago truncatula HOM05D001391 ORTHO05D005432 2.6e-108 396.0 291 68.4
THA.LOC104805193 Tarenaya hassleriana HOM05D001391 ORTHO05D005432 2.6e-108 396.0 290 69.3
Actinidia16169 Actinidia chinensis HOM05D001391 ORTHO05D005432 3.4e-108 395.6 254 76.4
Dinv16729 Davidia involucrata HOM05D001391 ORTHO05D005432 3.4e-108 395.6 295 69.5
Aa31LG2G7090 Aethionema arabicum HOM05D001391 ORTHO05D005432 4.4e-108 395.2 294 67.7
FAN17G2247 Fragaria x ananassa HOM05D001391 ORTHO05D002605 4.4e-108 395.2 303 67.3
QL03p071709 Quercus lobata HOM05D001391 ORTHO05D005432 4.4e-108 395.2 257 73.9
TPR.G34031 Trifolium pratense HOM05D001391 ORTHO05D005432 4.4e-108 395.2 293 68.3
ATR0064G010 Amborella trichopoda HOM05D001391 ORTHO05D005432 2.2e-107 392.9 243 77.8
Atru.chr11.1633 Acer truncatum HOM05D001391 ORTHO05D005432 3.7e-107 392.1 292 67.8
Aqoxy3G03632 Aquilegia oxysepala HOM05D001391 ORTHO05D005432 3.7e-107 392.1 265 75.5
AL5G13280 Arabidopsis lyrata HOM05D001391 ORTHO05D005432 4.9e-107 391.7 297 66.3
BcaB07g30667 Brassica carinata HOM05D001391 ORTHO05D005432 4.9e-107 391.7 294 67.3
A09p24460 Brassica napus HOM05D001391 ORTHO05D005432 4.9e-107 391.7 297 67.3
BraA09t38039Z Brassica rapa HOM05D001391 ORTHO05D005432 4.9e-107 391.7 297 67.3
Duzib248G0196 Durio zibethinus HOM05D001391 ORTHO05D005432 4.9e-107 391.7 303 65.3
Zm00001eb020150 Zea mays HOM05D001391 ORTHO05D005432 4.9e-107 391.7 293 70.6
RcHm_v2.0_Chr4g0438461 Rosa chinensis HOM05D001391 ORTHO05D005432 8.3e-107 391.0 276 69.6
BcaC03g17224 Brassica carinata HOM05D001391 ORTHO05D005432 1.1e-106 390.6 291 67.4
BcaC04g21485 Brassica carinata HOM05D001391 ORTHO05D005432 1.1e-106 390.6 294 67.7
C02p51560 Brassica napus HOM05D001391 ORTHO05D005432 1.1e-106 390.6 291 67.4
C09p31260 Brassica napus HOM05D001391 ORTHO05D005432 1.1e-106 390.6 294 67.7
BolC2t11243H Brassica oleracea HOM05D001391 ORTHO05D005432 1.1e-106 390.6 291 67.4
BolC9t55982H Brassica oleracea HOM05D001391 ORTHO05D005432 1.1e-106 390.6 294 67.7
HanXRQChr15g0477081 Helianthus annuus HOM05D001391 ORTHO05D005432 1.1e-106 390.6 289 66.4
ClCG08G010360 Citrullus lanatus HOM05D001391 ORTHO05D005432 1.4e-106 390.2 317 63.4
Gorai.013G093700 Gossypium raimondii HOM05D001391 ORTHO05D005432 1.8e-106 389.8 294 66.3
CSS0007431 Camellia sinensis var. sinensis HOM05D001391 ORTHO05D005432 2.4e-106 389.4 268 72.0
CSS0028231 Camellia sinensis var. sinensis HOM05D001391 ORTHO05D005432 2.4e-106 389.4 268 72.0
CARHR145860 Cardamine hirsuta HOM05D001391 ORTHO05D005432 7.0e-106 387.9 296 65.2
Thhalv10004477m.g Eutrema salsugineum HOM05D001391 ORTHO05D005432 7.0e-106 387.9 294 66.7
ECA246G4329 Erigeron canadensis HOM05D001391 ORTHO05D005432 9.2e-106 387.5 294 66.7
AT2G03510 Arabidopsis thaliana HOM05D001391 ORTHO05D005432 1.2e-105 387.1 296 64.9
Sp2g14420 Schrenkiella parvula HOM05D001391 ORTHO05D005432 1.2e-105 387.1 295 66.1
Carub.0005s0265 Capsella rubella HOM05D001391 ORTHO05D005432 2.0e-105 386.3 296 65.2
Nitab4.5_0000231g0390 Nicotiana tabacum HOM05D001391 ORTHO05D005432 2.7e-105 386.0 295 67.8
Nitab4.5_0001487g0070 Nicotiana tabacum HOM05D001391 ORTHO05D005432 2.7e-105 386.0 295 67.8
HanXRQChr12g0375271 Helianthus annuus HOM05D001391 ORTHO05D005432 5.9e-105 384.8 290 66.9
unitig_22.g6493 Utricularia gibba HOM05D001391 ORTHO05D005432 1.3e-104 383.6 296 66.6
Dinv34072 Davidia involucrata HOM05D001391 ORTHO05D005432 5.0e-104 381.7 268 73.1
Gohir.D13G081800 Gossypium hirsutum HOM05D001391 ORTHO05D005432 8.6e-104 380.9 294 65.3
PSO478G2440 Papaver somniferum HOM05D001391 ORTHO05D005432 1.1e-103 380.6 287 66.9
HPP92_020445 Vanilla planifolia HOM05D001391 ORTHO05D005432 1.0e-101 374.0 257 71.2
Pp3c1_8060 Physcomitrium patens HOM05D001391 ORTHO05D005432 3.0e-101 372.5 284 65.1
QL03p071737 Quercus lobata HOM05D001391 ORTHO05D005432 4.0e-101 372.1 295 64.4
SMO364G0146 Selaginella moellendorffii HOM05D001391 ORTHO05D005432 7.5e-100 367.9 245 71.0
Lsat_1_v5_gn_3_53800 Lactuca sativa HOM05D001391 ORTHO05D005432 3.7e-99 365.5 304 62.8
Migut.L01194 Erythranthe guttata HOM05D001391 ORTHO05D005432 1.1e-98 364.0 257 74.3
TAR622G0883 Trochodendron aralioides HOM05D001391 ORTHO05D005432 2.7e-97 359.4 290 64.5
AagrBONN_evm.TU.Sc2ySwM_228.3454 Anthoceros agrestis HOM05D001391 ORTHO05D005432 2.3e-96 356.3 254 67.7
Mapoly0041s0056 Marchantia polymorpha HOM05D001391 ORTHO05D005432 2.3e-96 356.3 284 63.4
Pp3c2_37740 Physcomitrium patens HOM05D001391 ORTHO05D005432 3.0e-96 355.9 291 61.9
QL03p071961 Quercus lobata HOM05D001391 ORTHO05D005432 1.2e-94 350.5 251 69.3
CsaV3_6G032550 Cucumis sativus L. HOM05D001391 ORTHO05D005432 3.1e-93 345.9 298 62.4
Eucgr.B03155 Eucalyptus grandis HOM05D001391 ORTHO05D005432 3.1e-93 345.9 242 69.8
Peaxi162Scf00175g00121 Petunia axillaris HOM05D001391 ORTHO05D005432 3.1e-93 345.9 237 70.5
CBR_g22084 Chara braunii HOM05D001391 ORTHO05D005432 1.9e-90 336.7 246 66.3
CsaV3_6G033630 Cucumis sativus L. HOM05D001391 ORTHO05D005432 1.6e-89 333.6 319 58.3
Lj6C779T14 Lonicera japonica HOM05D001391 ORTHO05D005432 6.0e-89 331.6 343 53.9
Glyma.07G225600 Glycine max HOM05D001391 ORTHO05D005432 6.6e-88 328.2 212 76.4
vmacro01316 Vaccinium macrocarpon HOM05D001391 ORTHO05D005432 1.1e-87 327.4 305 59.0
Sabra08G0071900 Salix brachista HOM05D001391 ORTHO05D005432 2.5e-87 326.2 246 67.1
Thecc.02G331800 Theobroma cacao HOM05D001391 ORTHO05D005432 1.6e-86 323.6 229 71.2
Gohir.A13G082200 Gossypium hirsutum HOM05D001391 ORTHO05D005432 6.2e-86 321.6 227 70.0
CDE02G0606 Ceratophyllum demersum HOM05D001391 ORTHO05D005432 1.5e-84 317.0 219 71.2
Cpa.g.sc1.121 Carica papaya HOM05D001391 ORTHO05D005432 4.6e-81 305.4 195 76.9
Thhalv10022792m.g Eutrema salsugineum HOM05D001391 ORTHO05D005432 4.6e-81 305.4 229 66.4
Thhalv10022979m.g Eutrema salsugineum HOM05D001391 ORTHO05D005432 4.6e-81 305.4 229 66.4
AUR62007921 Chenopodium quinoa HOM05D001391 ORTHO05D005432 2.3e-80 303.1 257 61.5
Nn4g23419 Nelumbo nucifera HOM05D001391 ORTHO05D005432 3.2e-74 282.7 296 54.4
MBI16_g24179_MAGBIO Magnolia biondii HOM05D001391 ORTHO05D005432 7.8e-73 278.1 257 58.0
Solyc05g012340.4 Solanum lycopersicum HOM05D001391 ORTHO05D005432 6.9e-69 265.0 182 70.9
Hund25181 Selenicereus undatus HOM05D001391 ORTHO05D005432 8.4e-67 258.1 170 72.4
Eucgr.B03159 Eucalyptus grandis HOM05D001391 ORTHO05D005432 1.4e-66 257.3 193 67.9
Rhsim12G0074900 Rhododendron simsii HOM05D001391 ORTHO05D005432 2.4e-66 256.5 243 55.1
Nn3g17437 Nelumbo nucifera HOM05D001391 ORTHO05D005432 6.7e-56 221.9 295 49.5
CSS0036366 Camellia sinensis var. sinensis HOM05D001391 ORTHO05D005432 4.2e-50 202.6 177 62.1
Gohir.D12G164650 Gossypium hirsutum HOM05D001391 ORTHO05D005432 7.6e-44 181.8 212 50.5
HanXRQChr08g0223901 Helianthus annuus HOM05D001391 ORTHO05D005432 1.2e-36 157.9 124 63.7
CSS0025210 Camellia sinensis var. sinensis HOM05D001391 ORTHO05D005432 1.3e-35 154.5 125 64.0
Gorai.008G177300 Gossypium raimondii HOM05D001391 ORTHO05D005432 4.3e-31 139.4 117 62.4
Gorai.008G177400 Gossypium raimondii HOM05D001391 ORTHO05D005432 8.2e-30 135.2 82 74.4
Mapoly0004s0019 Marchantia polymorpha HOM05D001391 ORTHO05D005432 1.7e-27 127.5 250 30.0
QL03p071882 Quercus lobata HOM05D001391 ORTHO05D005432 5.0e-27 125.9 117 57.3
QL01p050908 Quercus lobata HOM05D001391 ORTHO05D005432 7.9e-25 118.6 78 69.2
Os03g0421400 Oryza sativa ssp. japonica HOM05D001391 ORTHO05D005432 6.5e-19 99.0 89 59.6
SEGI_10839 Sequoiadendron giganteum HOM05D001391 ORTHO05D005432 5.5e-18 95.9 51 76.5
SEGI_38290 Sequoiadendron giganteum HOM05D001391 ORTHO05D005432 1.6e-17 94.4 57 70.2
BcaB07g30295 Brassica carinata HOM05D001391 ORTHO05D005432 1.5e-15 87.8 79 58.2
MD16G1164500 Malus domestica HOM05D001391 ORTHO05D005432 1.7e-14 84.3 52 69.2
SEGI_06703 Sequoiadendron giganteum HOM05D001391 ORTHO05D005432 1.3e-11 74.7 68 55.9
SEGI_41081 Sequoiadendron giganteum HOM05D001391 ORTHO05D005432 2.2e-11 73.9 68 55.9
QL01p050911 Quercus lobata HOM05D001391 ORTHO05D005432 2.7e-09 67.0 73 49.3
SEGI_37700 Sequoiadendron giganteum HOM05D001391 ORTHO05D005432 9.7e-07 58.5 46 56.5
Gohir.A13G082366 Gossypium hirsutum HOM05D001391 ORTHO05D005432 8.2e-06 55.5 45 60.0


User provided reference genes

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